Wall clock time and date at job start Fri Apr 10 2020 14:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34773 * 119.99923 * 2 1 4 4 O 1.21631 * 119.99922 * 181.12919 * 3 2 1 5 5 C 1.47156 * 120.00146 * 1.13264 * 3 2 1 6 6 C 1.38401 * 126.88412 * 8.58616 * 5 3 2 7 7 C 1.39679 * 105.36193 * 179.97438 * 6 5 3 8 8 N 1.30863 * 107.85562 * 0.35514 * 7 6 5 9 9 N 1.28436 * 110.93104 * 359.77504 * 8 7 6 10 10 C 1.46502 * 125.18911 * 180.02562 * 9 8 7 11 11 C 1.46501 * 119.99953 * 179.97438 * 2 1 3 12 12 H 1.09005 * 110.78230 * 181.78476 * 11 2 1 13 13 C 1.55162 * 110.72144 * 305.02494 * 11 2 1 14 14 C 1.55135 * 101.48426 * 82.69643 * 13 11 2 15 15 N 1.47427 * 104.72108 * 37.29476 * 14 13 11 16 16 C 1.36938 * 125.64724 * 155.81393 * 15 14 13 17 17 H 1.07994 * 120.00547 * 188.41494 * 16 15 14 18 18 C 1.38820 * 119.99581 * 8.42161 * 16 15 14 19 19 N 1.31614 * 120.00027 * 7.42570 * 18 16 15 20 20 Si 1.86803 * 119.99665 * 187.42647 * 18 16 15 21 21 H 1.48506 * 109.46890 * 265.00269 * 20 18 16 22 22 H 1.48498 * 109.46998 * 24.99777 * 20 18 16 23 23 H 1.48499 * 109.47038 * 145.00231 * 20 18 16 24 24 C 1.47021 * 108.70617 * 335.55612 * 15 14 13 25 25 H 1.09005 * 109.47300 * 276.15831 * 1 2 3 26 26 H 1.08993 * 109.47178 * 36.16460 * 1 2 3 27 27 H 1.09002 * 109.47158 * 156.15985 * 1 2 3 28 28 H 1.08000 * 127.32015 * 0.02562 * 6 5 3 29 29 H 1.07994 * 126.07123 * 180.11315 * 7 6 5 30 30 H 1.08998 * 109.47243 * 273.69046 * 10 9 8 31 31 H 1.09000 * 109.47573 * 33.69735 * 10 9 8 32 32 H 1.09003 * 109.46856 * 153.69598 * 10 9 8 33 33 H 1.09000 * 111.00379 * 200.93379 * 13 11 2 34 34 H 1.08993 * 111.00272 * 324.74693 * 13 11 2 35 35 H 1.08997 * 110.49655 * 278.45553 * 14 13 11 36 36 H 1.08993 * 110.34169 * 156.05709 * 14 13 11 37 37 H 0.96999 * 119.99525 * 180.02562 * 19 18 16 38 38 H 1.08991 * 109.88697 * 120.70519 * 24 15 14 39 39 H 1.09009 * 109.87931 * 241.87176 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3549 1.1673 -0.0208 5 6 1.4033 2.4415 0.0252 6 6 0.0430 2.6118 0.2155 7 6 -0.1689 3.9912 0.1568 8 7 0.9867 4.5659 -0.0596 9 7 1.9250 3.6928 -0.1418 10 6 3.3393 3.9932 -0.3781 11 6 2.1975 -1.2687 0.0006 12 1 3.2730 -1.0944 0.0322 13 6 1.7506 -2.1601 1.1894 14 6 0.4679 -2.8184 0.6168 15 7 0.7745 -3.0625 -0.8044 16 6 0.1811 -4.0077 -1.5980 17 1 0.5673 -4.2016 -2.5877 18 6 -0.9169 -4.7167 -1.1301 19 7 -1.4779 -4.3823 0.0125 20 14 -1.5980 -6.1452 -2.1224 21 1 -2.7162 -5.6672 -2.9748 22 1 -0.5253 -6.7067 -2.9823 23 1 -2.0940 -7.1973 -1.1992 24 6 1.8183 -2.1188 -1.2304 25 1 -0.3634 0.1102 1.0218 26 1 -0.3633 0.8296 -0.6064 27 1 -0.3633 -0.9400 -0.4154 28 1 -0.6971 1.8419 0.3761 29 1 -1.1185 4.4938 0.2663 30 1 3.5220 4.0620 -1.4504 31 1 3.5935 4.9415 0.0954 32 1 3.9549 3.1993 0.0451 33 1 2.5076 -2.9091 1.4223 34 1 1.5199 -1.5551 2.0662 35 1 -0.3824 -2.1429 0.7109 36 1 0.2644 -3.7593 1.1279 37 1 -2.2449 -4.8780 0.3396 38 1 2.6909 -2.6667 -1.5856 39 1 1.4350 -1.4746 -2.0219 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032945245.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:00:05 Heat of formation + Delta-G solvation = 88.254547 kcal Electronic energy + Delta-G solvation = -22327.484087 eV Core-core repulsion = 19080.559590 eV Total energy + Delta-G solvation = -3246.924497 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.57021 -41.10055 -38.98348 -36.27611 -34.42890 -33.91448 -32.09409 -30.80025 -29.55639 -28.36260 -27.57223 -26.35198 -24.17582 -22.92007 -22.04847 -21.23502 -20.37868 -18.91168 -18.28401 -17.93336 -17.34007 -16.83070 -16.66121 -16.18137 -15.76776 -15.68094 -15.10472 -14.68098 -14.43553 -14.11961 -13.86808 -13.72295 -13.56343 -13.40495 -13.31661 -12.98364 -12.80662 -12.75322 -12.43117 -12.06558 -11.93822 -11.83644 -11.56170 -11.46411 -10.99432 -10.59788 -10.27725 -9.98945 -9.71102 -8.82353 -7.83818 -5.17830 0.18454 1.32334 1.49768 1.51021 1.59668 1.64022 2.05768 2.08735 2.52271 3.29074 3.35984 3.62651 3.70883 3.84758 3.98158 4.16215 4.24570 4.28390 4.30156 4.36765 4.55203 4.62934 4.65248 4.68767 4.69789 4.82649 4.90001 4.93271 5.03664 5.14142 5.45856 5.51114 5.55040 5.65397 5.73097 5.81303 6.23767 6.26698 6.88761 7.06264 7.13195 7.78568 8.44219 9.26608 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.031155 B = 0.004389 C = 0.004136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.525109 B = 6378.032296 C = 6767.896066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 N -0.574 5.574 3 C 0.587 3.413 4 O -0.575 6.575 5 C -0.056 4.056 6 C -0.197 4.197 7 C -0.005 4.005 8 N -0.297 5.297 9 N -0.269 5.269 10 C 0.077 3.923 11 C 0.140 3.860 12 H 0.110 0.890 13 C -0.141 4.141 14 C 0.169 3.831 15 N -0.618 5.618 16 C -0.243 4.243 17 H 0.074 0.926 18 C -0.053 4.053 19 N -0.941 5.941 20 Si 0.971 3.029 21 H -0.287 1.287 22 H -0.274 1.274 23 H -0.294 1.294 24 C 0.128 3.872 25 H 0.078 0.922 26 H 0.100 0.900 27 H 0.077 0.923 28 H 0.197 0.803 29 H 0.220 0.780 30 H 0.091 0.909 31 H 0.112 0.888 32 H 0.104 0.896 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.030 0.970 36 H 0.039 0.961 37 H 0.249 0.751 38 H 0.038 0.962 39 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.196 14.823 2.062 15.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 N -0.304 5.304 3 C 0.376 3.624 4 O -0.456 6.456 5 C -0.184 4.184 6 C -0.225 4.225 7 C -0.181 4.181 8 N -0.130 5.130 9 N -0.057 5.057 10 C -0.062 4.062 11 C 0.036 3.964 12 H 0.128 0.872 13 C -0.180 4.180 14 C 0.044 3.956 15 N -0.345 5.345 16 C -0.372 4.372 17 H 0.092 0.908 18 C -0.247 4.247 19 N -0.589 5.589 20 Si 0.800 3.200 21 H -0.214 1.214 22 H -0.199 1.199 23 H -0.220 1.220 24 C 0.002 3.998 25 H 0.096 0.904 26 H 0.118 0.882 27 H 0.096 0.904 28 H 0.214 0.786 29 H 0.237 0.763 30 H 0.110 0.890 31 H 0.130 0.870 32 H 0.122 0.878 33 H 0.099 0.901 34 H 0.101 0.899 35 H 0.048 0.952 36 H 0.057 0.943 37 H 0.058 0.942 38 H 0.055 0.945 39 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 5.346 15.734 1.867 16.722 hybrid contribution -0.902 -1.763 -0.444 2.029 sum 4.445 13.971 1.423 14.730 Atomic orbital electron populations 1.22904 0.78079 1.05105 1.03090 1.47456 1.08062 1.04422 1.70472 1.17133 0.86082 0.82809 0.76387 1.90696 1.13977 1.87473 1.53452 1.21341 0.94946 0.87421 1.14730 1.23455 0.93890 0.98854 1.06346 1.24245 0.97113 0.92462 1.04238 1.73169 0.98160 1.21345 1.20324 1.45857 1.09271 1.01963 1.48608 1.22529 0.73856 1.05346 1.04461 1.21983 0.96908 0.81800 0.95696 0.87239 1.23267 0.99435 0.98488 0.96794 1.21590 0.92711 0.97741 0.83535 1.44708 1.43517 1.38040 1.08207 1.19314 1.08380 1.11766 0.97750 0.90805 1.25470 0.97884 1.02460 0.98870 1.70090 1.24162 1.42509 1.22156 0.85182 0.78098 0.79165 0.77547 1.21443 1.19945 1.22031 1.21702 0.92034 0.91059 0.95044 0.90376 0.88178 0.90405 0.78641 0.76344 0.89032 0.86986 0.87772 0.90127 0.89874 0.95221 0.94299 0.94203 0.94457 0.96036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.45 6.97 127.77 0.89 2.34 16 2 N -0.57 -18.18 2.82 -820.12 -2.32 -20.50 16 3 C 0.59 18.56 7.65 86.59 0.66 19.22 16 4 O -0.57 -20.09 13.99 -4.13 -0.06 -20.14 16 5 C -0.06 -1.57 6.80 40.78 0.28 -1.29 16 6 C -0.20 -4.52 8.87 22.66 0.20 -4.32 16 7 C -0.01 -0.11 12.03 85.19 1.03 0.91 16 8 N -0.30 -7.45 11.90 -57.14 -0.68 -8.13 16 9 N -0.27 -6.99 3.75 -356.02 -1.33 -8.33 16 10 C 0.08 1.56 11.02 127.77 1.41 2.97 16 11 C 0.14 4.82 3.58 46.18 0.17 4.99 16 12 H 0.11 3.68 7.00 -2.38 -0.02 3.67 16 13 C -0.14 -4.92 6.54 32.07 0.21 -4.71 16 14 C 0.17 7.55 4.58 86.93 0.40 7.95 16 15 N -0.62 -29.82 2.98 -691.54 -2.06 -31.88 16 16 C -0.24 -13.06 10.25 84.04 0.86 -12.20 16 17 H 0.07 3.89 7.84 -2.91 -0.02 3.86 16 18 C -0.05 -2.85 5.43 84.86 0.46 -2.39 16 19 N -0.94 -52.84 10.54 21.65 0.23 -52.61 16 20 Si 0.97 44.08 29.56 68.60 2.03 46.11 16 21 H -0.29 -12.88 7.11 99.48 0.71 -12.18 16 22 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 23 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 24 C 0.13 5.17 6.30 86.73 0.55 5.71 16 25 H 0.08 1.99 7.64 -2.38 -0.02 1.97 16 26 H 0.10 2.49 4.91 -2.39 -0.01 2.48 16 27 H 0.08 2.91 4.73 -2.39 -0.01 2.90 16 28 H 0.20 3.76 4.61 -2.91 -0.01 3.75 16 29 H 0.22 2.82 8.06 -2.91 -0.02 2.80 16 30 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.11 1.69 8.14 -2.39 -0.02 1.68 16 32 H 0.10 2.37 5.97 -2.39 -0.01 2.35 16 33 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 34 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 35 H 0.03 1.37 5.48 -2.39 -0.01 1.36 16 36 H 0.04 2.02 6.74 -2.39 -0.02 2.00 16 37 H 0.25 13.65 8.31 -92.71 -0.77 12.87 16 38 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.02 0.90 8.04 -2.38 -0.02 0.88 16 Total: -1.00 -65.58 306.93 3.99 -61.59 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: 1.07 Total: 14.72 kcal Atomic # 6 Polarization: 12.07 SS G_CDS: 7.11 Total: 19.18 kcal Atomic # 7 Polarization: -115.29 SS G_CDS: -6.16 Total: -121.45 kcal Atomic # 8 Polarization: -20.09 SS G_CDS: -0.06 Total: -20.14 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -65.58 3.99 -61.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032945245.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.846 kcal (2) G-P(sol) polarization free energy of solvation -65.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds