Wall clock time and date at job start Fri Apr 10 2020 14:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.28463 * 124.88671 * 2 1 4 4 C 1.31804 * 110.07805 * 180.18246 * 3 2 1 5 5 C 1.47711 * 126.52066 * 179.82138 * 4 3 2 6 6 O 1.21573 * 120.00075 * 179.68683 * 5 4 3 7 7 N 1.34777 * 119.99927 * 359.41177 * 5 4 3 8 8 C 1.46499 * 120.00195 * 180.27919 * 7 5 4 9 9 C 1.52997 * 109.47551 * 179.97438 * 8 7 5 10 10 N 1.46490 * 109.47360 * 180.02562 * 9 8 7 11 11 C 1.36938 * 120.00291 * 179.97438 * 10 9 8 12 12 H 1.08001 * 119.99959 * 0.02562 * 11 10 9 13 13 C 1.38811 * 120.00371 * 179.97438 * 11 10 9 14 14 N 1.31619 * 120.00303 * 180.02562 * 13 11 10 15 15 Si 1.86800 * 119.99811 * 359.97438 * 13 11 10 16 16 H 1.48508 * 109.46685 * 90.00365 * 15 13 11 17 17 H 1.48502 * 109.47120 * 209.99567 * 15 13 11 18 18 H 1.48494 * 109.47357 * 330.00286 * 15 13 11 19 19 C 1.41506 * 106.95999 * 359.55441 * 4 3 2 20 20 C 1.35035 * 124.88673 * 179.68670 * 2 1 3 21 21 C 1.50703 * 126.38444 * 359.97438 * 20 2 1 22 22 C 1.52999 * 117.50168 * 213.72535 * 21 20 2 23 23 C 1.53000 * 117.49901 * 145.06533 * 21 20 2 24 24 H 1.08998 * 109.47121 * 270.31166 * 1 2 3 25 25 H 1.08995 * 109.47187 * 30.32104 * 1 2 3 26 26 H 1.09010 * 109.46671 * 150.31537 * 1 2 3 27 27 H 0.97000 * 119.99736 * 0.27192 * 7 5 4 28 28 H 1.08998 * 109.46795 * 299.99885 * 8 7 5 29 29 H 1.09002 * 109.47196 * 59.99076 * 8 7 5 30 30 H 1.09007 * 109.46479 * 299.99856 * 9 8 7 31 31 H 1.08997 * 109.46852 * 59.99432 * 9 8 7 32 32 H 0.97000 * 120.00260 * 359.97438 * 10 9 8 33 33 H 0.96999 * 120.00263 * 179.97438 * 14 13 11 34 34 H 1.08003 * 127.24453 * 180.28077 * 19 4 3 35 35 H 1.09004 * 115.55105 * 359.39721 * 21 20 2 36 36 H 1.09007 * 117.49548 * 0.02562 * 22 21 20 37 37 H 1.09000 * 117.49989 * 145.01939 * 22 21 20 38 38 H 1.08998 * 117.49960 * 214.98233 * 23 21 20 39 39 H 1.09000 * 117.49851 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1998 1.0538 0.0000 4 6 3.4740 0.7169 -0.0039 5 6 4.6273 1.6399 -0.0090 6 8 5.7598 1.1977 -0.0066 7 7 4.4241 2.9721 -0.0219 8 6 5.5678 3.8875 -0.0330 9 6 5.0647 5.3323 -0.0471 10 7 6.2084 6.2476 -0.0589 11 6 6.0020 7.6013 -0.0732 12 1 4.9960 7.9941 -0.0753 13 6 7.0857 8.4686 -0.0838 14 7 6.8873 9.7697 -0.0970 15 14 8.8258 7.7892 -0.0779 16 1 9.2855 7.5938 -1.4765 17 1 9.7286 8.7464 0.6106 18 1 8.8466 6.4876 0.6364 19 6 3.5272 -0.6972 0.0039 20 6 2.2374 -1.1077 0.0061 21 6 1.7535 -2.5349 0.0144 22 6 2.5958 -3.5621 0.7735 23 6 2.5800 -3.5656 -0.7572 24 1 -0.3633 0.0056 1.0276 25 1 -0.3633 0.8870 -0.5188 26 1 -0.3633 -0.8929 -0.5090 27 1 3.5205 3.3249 -0.0238 28 1 6.1741 3.7222 0.8576 29 1 6.1711 3.7045 -0.9223 30 1 4.4586 5.4972 -0.9380 31 1 4.4613 5.5156 0.8419 32 1 7.1120 5.8949 -0.0566 33 1 7.6446 10.3758 -0.1041 34 1 4.4109 -1.3180 0.0076 35 1 0.6712 -2.6643 0.0259 36 1 3.4999 -3.2054 1.2672 37 1 2.0678 -4.3674 1.2840 38 1 2.0416 -4.3733 -1.2530 39 1 3.4736 -3.2113 -1.2712 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001128869312.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:00:41 Heat of formation + Delta-G solvation = 84.991390 kcal Electronic energy + Delta-G solvation = -20438.979641 eV Core-core repulsion = 17191.913643 eV Total energy + Delta-G solvation = -3247.065998 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.89 seconds Orbital eigenvalues (eV) -42.95454 -39.26069 -37.66199 -35.79519 -33.95132 -33.68257 -31.41583 -30.64757 -28.68704 -27.29606 -24.27257 -23.56633 -22.85079 -22.44332 -21.41532 -20.69236 -19.55123 -18.06264 -17.52564 -16.57898 -16.56019 -15.60989 -15.46096 -15.25607 -14.72567 -14.40008 -14.17434 -13.85448 -13.70017 -13.53725 -13.09778 -12.97522 -12.60165 -12.25518 -12.03003 -11.57605 -11.46263 -11.45126 -11.31127 -10.92457 -10.81789 -10.81115 -10.12678 -10.07553 -9.58994 -9.33553 -9.03057 -8.96421 -8.81018 -7.26467 -5.76689 -3.13799 1.41198 1.80572 2.14687 3.23610 3.40007 3.41683 3.45617 3.48953 3.50974 3.90875 4.08994 4.36984 4.48377 4.50040 4.60922 4.65284 4.68700 4.94164 5.07763 5.17993 5.22990 5.40776 5.43578 5.48276 5.49162 5.65190 5.67379 5.70991 5.74280 6.01377 6.17636 6.44625 6.46105 6.65018 6.69594 7.50718 7.79070 7.97395 8.30097 8.41455 9.19459 9.91712 10.10458 11.41217 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.038863 B = 0.002787 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.308824 B =10045.004849 C =10671.266004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.280 5.280 3 N -0.258 5.258 4 C -0.008 4.008 5 C 0.602 3.398 6 O -0.535 6.535 7 N -0.709 5.709 8 C 0.107 3.893 9 C 0.148 3.852 10 N -0.752 5.752 11 C -0.247 4.247 12 H 0.091 0.909 13 C 0.006 3.994 14 N -0.933 5.933 15 Si 0.885 3.115 16 H -0.283 1.283 17 H -0.290 1.290 18 H -0.275 1.275 19 C -0.177 4.177 20 C 0.043 3.957 21 C -0.099 4.099 22 C -0.161 4.161 23 C -0.162 4.162 24 H 0.085 0.915 25 H 0.099 0.901 26 H 0.094 0.906 27 H 0.407 0.593 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.034 0.966 31 H 0.034 0.966 32 H 0.363 0.637 33 H 0.260 0.740 34 H 0.160 0.840 35 H 0.115 0.885 36 H 0.103 0.897 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.661 -29.170 0.205 33.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.068 5.068 3 N -0.094 5.094 4 C -0.168 4.168 5 C 0.385 3.615 6 O -0.411 6.411 7 N -0.360 5.360 8 C -0.016 4.016 9 C 0.021 3.979 10 N -0.399 5.399 11 C -0.377 4.377 12 H 0.109 0.891 13 C -0.190 4.190 14 N -0.580 5.580 15 Si 0.715 3.285 16 H -0.209 1.209 17 H -0.216 1.216 18 H -0.201 1.201 19 C -0.205 4.205 20 C -0.080 4.080 21 C -0.118 4.118 22 C -0.199 4.199 23 C -0.200 4.200 24 H 0.104 0.896 25 H 0.117 0.883 26 H 0.112 0.888 27 H 0.242 0.758 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.196 0.804 33 H 0.070 0.930 34 H 0.178 0.822 35 H 0.133 0.867 36 H 0.121 0.879 37 H 0.120 0.880 38 H 0.120 0.880 39 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -15.795 -28.269 0.205 32.383 hybrid contribution 1.167 -0.749 0.028 1.387 sum -14.628 -29.018 0.233 32.497 Atomic orbital electron populations 1.22173 0.73372 1.05454 1.04522 1.45222 1.07614 1.02466 1.51502 1.73561 1.03001 1.13415 1.19408 1.21885 0.90726 0.94028 1.10184 1.16845 0.86491 0.81489 0.76628 1.90795 1.22534 1.77160 1.50564 1.45739 1.11052 1.05268 1.73954 1.21643 0.88082 0.89284 1.02617 1.20728 0.91453 0.86347 0.99412 1.42530 1.02651 1.03368 1.91342 1.19017 0.95116 0.80012 1.43513 0.89090 1.24674 0.97522 0.95084 1.01750 1.69701 1.30172 1.00892 1.57267 0.86535 0.85863 0.78179 0.77936 1.20923 1.21631 1.20106 1.21388 0.96391 0.93529 1.09190 1.20413 0.90578 0.89078 1.07966 1.20275 0.98143 0.85081 1.08340 1.23118 1.02012 1.00009 0.94758 1.23122 1.02190 0.99995 0.94662 0.89634 0.88253 0.88775 0.75799 0.91120 0.91108 0.94795 0.94847 0.80374 0.92978 0.82242 0.86654 0.87876 0.87963 0.87970 0.87879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.40 11.05 59.85 0.66 1.06 16 2 N -0.28 -2.71 3.70 -63.85 -0.24 -2.94 16 3 N -0.26 -3.26 11.67 33.42 0.39 -2.87 16 4 C -0.01 -0.11 7.13 -82.76 -0.59 -0.70 16 5 C 0.60 9.86 7.83 -12.39 -0.10 9.76 16 6 O -0.54 -10.30 16.93 5.30 0.09 -10.21 16 7 N -0.71 -10.92 5.55 -61.29 -0.34 -11.26 16 8 C 0.11 1.86 5.79 -4.04 -0.02 1.84 16 9 C 0.15 2.92 6.37 -4.05 -0.03 2.89 16 10 N -0.75 -18.42 5.41 -59.91 -0.32 -18.75 16 11 C -0.25 -7.13 10.47 -15.06 -0.16 -7.29 16 12 H 0.09 2.78 8.06 -52.49 -0.42 2.36 16 13 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 14 N -0.93 -29.63 13.97 55.49 0.78 -28.86 16 15 Si 0.88 22.56 27.73 -169.99 -4.71 17.85 16 16 H -0.28 -7.15 7.11 56.52 0.40 -6.74 16 17 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 18 H -0.28 -6.64 6.52 56.52 0.37 -6.28 16 19 C -0.18 -2.13 9.86 -39.36 -0.39 -2.51 16 20 C 0.04 0.41 6.60 -82.21 -0.54 -0.13 16 21 C -0.10 -0.60 5.93 -91.77 -0.54 -1.14 16 22 C -0.16 -0.85 10.05 -26.69 -0.27 -1.12 16 23 C -0.16 -0.85 10.06 -26.69 -0.27 -1.12 16 24 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 25 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.09 0.21 7.13 -51.92 -0.37 -0.16 16 27 H 0.41 5.55 8.20 -40.82 -0.33 5.21 16 28 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 29 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.36 8.71 5.53 -40.82 -0.23 8.49 16 33 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 34 H 0.16 1.78 8.06 -52.48 -0.42 1.36 16 35 H 0.12 0.45 7.18 -51.93 -0.37 0.07 16 36 H 0.10 0.64 7.94 -51.92 -0.41 0.23 16 37 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16 38 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.10 0.64 7.97 -51.93 -0.41 0.22 16 LS Contribution 335.84 15.07 5.06 5.06 Total: -1.00 -36.07 335.84 -7.17 -43.24 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -5.53 Total: 7.14 kcal Atomic # 6 Polarization: 3.95 SS G_CDS: -2.34 Total: 1.61 kcal Atomic # 7 Polarization: -64.94 SS G_CDS: 0.26 Total: -64.68 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: 0.09 Total: -10.21 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -4.71 Total: 17.85 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -36.07 -7.17 -43.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128869312.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.230 kcal (2) G-P(sol) polarization free energy of solvation -36.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds