Wall clock time and date at job start Fri Apr 10 2020 14:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.28463 * 124.88671 * 2 1 4 4 C 1.31804 * 110.07805 * 180.18246 * 3 2 1 5 5 C 1.47711 * 126.52066 * 179.82138 * 4 3 2 6 6 O 1.21573 * 120.00075 * 179.68683 * 5 4 3 7 7 N 1.34777 * 119.99927 * 359.41177 * 5 4 3 8 8 C 1.46499 * 120.00195 * 180.27919 * 7 5 4 9 9 C 1.52997 * 109.47551 * 179.97438 * 8 7 5 10 10 N 1.46490 * 109.47360 * 180.02562 * 9 8 7 11 11 C 1.36938 * 120.00291 * 179.97438 * 10 9 8 12 12 H 1.08001 * 119.99959 * 0.02562 * 11 10 9 13 13 C 1.38811 * 120.00371 * 179.97438 * 11 10 9 14 14 N 1.31619 * 120.00303 * 180.02562 * 13 11 10 15 15 Si 1.86800 * 119.99811 * 359.97438 * 13 11 10 16 16 H 1.48508 * 109.46685 * 90.00365 * 15 13 11 17 17 H 1.48502 * 109.47120 * 209.99567 * 15 13 11 18 18 H 1.48494 * 109.47357 * 330.00286 * 15 13 11 19 19 C 1.41506 * 106.95999 * 359.55441 * 4 3 2 20 20 C 1.35035 * 124.88673 * 179.68670 * 2 1 3 21 21 C 1.50703 * 126.38444 * 359.97438 * 20 2 1 22 22 C 1.52999 * 117.50168 * 213.72535 * 21 20 2 23 23 C 1.53000 * 117.49901 * 145.06533 * 21 20 2 24 24 H 1.08998 * 109.47121 * 270.31166 * 1 2 3 25 25 H 1.08995 * 109.47187 * 30.32104 * 1 2 3 26 26 H 1.09010 * 109.46671 * 150.31537 * 1 2 3 27 27 H 0.97000 * 119.99736 * 0.27192 * 7 5 4 28 28 H 1.08998 * 109.46795 * 299.99885 * 8 7 5 29 29 H 1.09002 * 109.47196 * 59.99076 * 8 7 5 30 30 H 1.09007 * 109.46479 * 299.99856 * 9 8 7 31 31 H 1.08997 * 109.46852 * 59.99432 * 9 8 7 32 32 H 0.97000 * 120.00260 * 359.97438 * 10 9 8 33 33 H 0.96999 * 120.00263 * 179.97438 * 14 13 11 34 34 H 1.08003 * 127.24453 * 180.28077 * 19 4 3 35 35 H 1.09004 * 115.55105 * 359.39721 * 21 20 2 36 36 H 1.09007 * 117.49548 * 0.02562 * 22 21 20 37 37 H 1.09000 * 117.49989 * 145.01939 * 22 21 20 38 38 H 1.08998 * 117.49960 * 214.98233 * 23 21 20 39 39 H 1.09000 * 117.49851 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1998 1.0538 0.0000 4 6 3.4740 0.7169 -0.0039 5 6 4.6273 1.6399 -0.0090 6 8 5.7598 1.1977 -0.0066 7 7 4.4241 2.9721 -0.0219 8 6 5.5678 3.8875 -0.0330 9 6 5.0647 5.3323 -0.0471 10 7 6.2084 6.2476 -0.0589 11 6 6.0020 7.6013 -0.0732 12 1 4.9960 7.9941 -0.0753 13 6 7.0857 8.4686 -0.0838 14 7 6.8873 9.7697 -0.0970 15 14 8.8258 7.7892 -0.0779 16 1 9.2855 7.5938 -1.4765 17 1 9.7286 8.7464 0.6106 18 1 8.8466 6.4876 0.6364 19 6 3.5272 -0.6972 0.0039 20 6 2.2374 -1.1077 0.0061 21 6 1.7535 -2.5349 0.0144 22 6 2.5958 -3.5621 0.7735 23 6 2.5800 -3.5656 -0.7572 24 1 -0.3633 0.0056 1.0276 25 1 -0.3633 0.8870 -0.5188 26 1 -0.3633 -0.8929 -0.5090 27 1 3.5205 3.3249 -0.0238 28 1 6.1741 3.7222 0.8576 29 1 6.1711 3.7045 -0.9223 30 1 4.4586 5.4972 -0.9380 31 1 4.4613 5.5156 0.8419 32 1 7.1120 5.8949 -0.0566 33 1 7.6446 10.3758 -0.1041 34 1 4.4109 -1.3180 0.0076 35 1 0.6712 -2.6643 0.0259 36 1 3.4999 -3.2054 1.2672 37 1 2.0678 -4.3674 1.2840 38 1 2.0416 -4.3733 -1.2530 39 1 3.4736 -3.2113 -1.2712 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001128869312.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:00:41 Heat of formation + Delta-G solvation = 58.267918 kcal Electronic energy + Delta-G solvation = -20440.138458 eV Core-core repulsion = 17191.913643 eV Total energy + Delta-G solvation = -3248.224815 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.77991 -40.56446 -38.12517 -37.49247 -35.58761 -34.51347 -33.45268 -31.48442 -30.16154 -28.24443 -25.66467 -24.47006 -23.76252 -23.22564 -23.06648 -21.61398 -20.55247 -19.84188 -18.62153 -17.59542 -17.38286 -17.02795 -16.58782 -16.34057 -15.97661 -15.68147 -15.33605 -15.21976 -15.00275 -14.74536 -14.55597 -13.67283 -13.47483 -13.42825 -13.21471 -12.85038 -12.73003 -12.62708 -12.39645 -12.10194 -12.04755 -12.01446 -11.83285 -11.43239 -11.31502 -11.04742 -10.36094 -10.02697 -9.77555 -9.38047 -8.05716 -5.41580 0.43234 0.95842 1.39494 1.41496 1.47858 1.49315 2.02087 2.27164 2.46774 3.03706 3.19452 3.25713 3.45596 3.69975 3.80650 3.93873 4.02356 4.08884 4.14513 4.16445 4.36965 4.40362 4.48404 4.55337 4.65862 4.70910 4.83308 4.95877 5.03521 5.05669 5.18190 5.24440 5.28148 5.29486 5.71193 5.78606 6.16873 6.34735 6.83134 7.01829 7.06615 7.75821 7.94910 9.15034 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.038863 B = 0.002787 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.308824 B =10045.004849 C =10671.266004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.272 5.272 3 N -0.270 5.270 4 C -0.039 4.039 5 C 0.601 3.399 6 O -0.572 6.572 7 N -0.701 5.701 8 C 0.122 3.878 9 C 0.151 3.849 10 N -0.757 5.757 11 C -0.239 4.239 12 H 0.062 0.938 13 C -0.060 4.060 14 N -0.980 5.980 15 Si 0.954 3.046 16 H -0.276 1.276 17 H -0.292 1.292 18 H -0.253 1.253 19 C -0.200 4.200 20 C 0.057 3.943 21 C -0.104 4.104 22 C -0.160 4.160 23 C -0.159 4.159 24 H 0.103 0.897 25 H 0.104 0.896 26 H 0.126 0.874 27 H 0.416 0.584 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.040 0.960 31 H 0.039 0.961 32 H 0.368 0.632 33 H 0.260 0.740 34 H 0.157 0.843 35 H 0.147 0.853 36 H 0.087 0.913 37 H 0.124 0.876 38 H 0.124 0.876 39 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.057 -32.094 0.236 36.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.061 5.061 3 N -0.107 5.107 4 C -0.197 4.197 5 C 0.387 3.613 6 O -0.449 6.449 7 N -0.353 5.353 8 C -0.002 4.002 9 C 0.025 3.975 10 N -0.404 5.404 11 C -0.370 4.370 12 H 0.080 0.920 13 C -0.252 4.252 14 N -0.630 5.630 15 Si 0.781 3.219 16 H -0.202 1.202 17 H -0.219 1.219 18 H -0.178 1.178 19 C -0.228 4.228 20 C -0.068 4.068 21 C -0.124 4.124 22 C -0.197 4.197 23 C -0.197 4.197 24 H 0.121 0.879 25 H 0.122 0.878 26 H 0.144 0.856 27 H 0.253 0.747 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.201 0.799 33 H 0.069 0.931 34 H 0.175 0.825 35 H 0.165 0.835 36 H 0.106 0.894 37 H 0.142 0.858 38 H 0.143 0.857 39 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -17.244 -31.227 0.238 35.673 hybrid contribution 1.394 0.101 0.017 1.397 sum -15.850 -31.126 0.255 34.930 Atomic orbital electron populations 1.22671 0.70377 1.07388 1.06289 1.45728 1.09212 1.01804 1.49333 1.73489 1.02580 1.14805 1.19875 1.21612 0.90721 0.94391 1.12988 1.17165 0.86823 0.81674 0.75618 1.90759 1.24117 1.77744 1.52326 1.45595 1.10959 1.04956 1.73759 1.21331 0.88484 0.88097 1.02309 1.20791 0.90152 0.86818 0.99766 1.42519 1.04234 1.02365 1.91259 1.19002 0.93924 0.82043 1.42033 0.91975 1.25506 1.02154 0.95323 1.02233 1.69870 1.31452 1.02468 1.59182 0.85425 0.79983 0.78225 0.78290 1.20250 1.21894 1.17782 1.21513 0.97819 0.92800 1.10714 1.20853 0.89690 0.90661 1.05561 1.20517 0.99862 0.82818 1.09162 1.23183 1.01497 1.00118 0.94920 1.23185 1.01693 1.00090 0.94736 0.87879 0.87775 0.85560 0.74724 0.91535 0.91403 0.94156 0.94263 0.79900 0.93131 0.82535 0.83546 0.89404 0.85765 0.85737 0.89398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.43 11.05 127.77 1.41 1.85 16 2 N -0.27 -4.70 3.70 -355.92 -1.32 -6.02 16 3 N -0.27 -6.59 11.67 -48.17 -0.56 -7.15 16 4 C -0.04 -1.11 7.13 42.46 0.30 -0.80 16 5 C 0.60 19.98 7.83 86.75 0.68 20.66 16 6 O -0.57 -22.51 16.93 -3.95 -0.07 -22.58 16 7 N -0.70 -21.46 5.55 -466.10 -2.59 -24.04 16 8 C 0.12 4.16 5.79 86.38 0.50 4.66 16 9 C 0.15 5.85 6.37 86.38 0.55 6.40 16 10 N -0.76 -36.53 5.41 -343.47 -1.86 -38.39 16 11 C -0.24 -13.92 10.47 84.03 0.88 -13.04 16 12 H 0.06 3.90 8.06 -2.91 -0.02 3.88 16 13 C -0.06 -3.61 5.50 84.86 0.47 -3.15 16 14 N -0.98 -63.41 13.97 21.65 0.30 -63.10 16 15 Si 0.95 46.49 27.73 68.60 1.90 48.39 16 16 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 17 H -0.29 -14.30 7.11 99.48 0.71 -13.59 16 18 H -0.25 -11.30 6.52 99.48 0.65 -10.65 16 19 C -0.20 -4.81 9.86 22.41 0.22 -4.59 16 20 C 0.06 0.99 6.60 41.40 0.27 1.26 16 21 C -0.10 -0.93 5.93 -11.54 -0.07 -1.00 16 22 C -0.16 -1.31 10.05 30.62 0.31 -1.00 16 23 C -0.16 -1.29 10.06 30.62 0.31 -0.98 16 24 H 0.10 0.34 8.14 -2.39 -0.02 0.32 16 25 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 26 H 0.13 -0.02 7.13 -2.38 -0.02 -0.04 16 27 H 0.42 11.16 8.20 -92.71 -0.76 10.40 16 28 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 29 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 30 H 0.04 1.53 8.14 -2.38 -0.02 1.51 16 31 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.37 17.06 5.53 -92.71 -0.51 16.54 16 33 H 0.26 15.96 8.31 -92.71 -0.77 15.19 16 34 H 0.16 3.66 8.06 -2.91 -0.02 3.63 16 35 H 0.15 0.41 7.18 -2.38 -0.02 0.39 16 36 H 0.09 1.01 7.94 -2.38 -0.02 0.99 16 37 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16 38 H 0.12 0.47 8.14 -2.39 -0.02 0.45 16 39 H 0.09 1.00 7.97 -2.39 -0.02 0.98 16 Total: -1.00 -79.25 335.84 1.39 -77.86 By element: Atomic # 1 Polarization: 25.02 SS G_CDS: -0.26 Total: 24.77 kcal Atomic # 6 Polarization: 4.43 SS G_CDS: 5.83 Total: 10.27 kcal Atomic # 7 Polarization: -132.69 SS G_CDS: -6.02 Total: -138.71 kcal Atomic # 8 Polarization: -22.51 SS G_CDS: -0.07 Total: -22.58 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 1.90 Total: 48.39 kcal Total: -79.25 1.39 -77.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128869312.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.127 kcal (2) G-P(sol) polarization free energy of solvation -79.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds