Wall clock time and date at job start Fri Apr 10 2020 14:00:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34262 * 125.75691 * 2 1 4 4 C 1.38037 * 107.41784 * 180.02562 * 3 2 1 5 5 C 1.47433 * 126.41601 * 179.97438 * 4 3 2 6 6 O 1.21601 * 119.99699 * 0.02562 * 5 4 3 7 7 N 1.34773 * 120.00331 * 180.02562 * 5 4 3 8 8 C 1.46493 * 120.00023 * 180.02562 * 7 5 4 9 9 C 1.53006 * 109.47170 * 179.97438 * 8 7 5 10 10 N 1.46502 * 109.47247 * 179.97438 * 9 8 7 11 11 C 1.36933 * 120.00339 * 270.00603 * 10 9 8 12 12 H 1.07995 * 120.00560 * 140.53619 * 11 10 9 13 13 C 1.38814 * 119.99406 * 320.53203 * 11 10 9 14 14 N 1.31612 * 120.00673 * 340.28245 * 13 11 10 15 15 Si 1.86808 * 119.99645 * 160.28451 * 13 11 10 16 16 H 1.48502 * 109.47107 * 89.99984 * 15 13 11 17 17 H 1.48501 * 109.47081 * 210.00085 * 15 13 11 18 18 H 1.48496 * 109.47165 * 330.00187 * 15 13 11 19 19 C 1.46499 * 119.99505 * 90.00162 * 10 9 8 20 20 C 1.53000 * 117.49756 * 183.28633 * 19 10 9 21 21 C 1.52994 * 60.00104 * 252.51432 * 20 19 10 22 22 C 1.41293 * 107.17327 * 0.24557 * 4 3 2 23 23 N 1.30450 * 108.01954 * 359.58946 * 22 4 3 24 24 H 1.08998 * 109.47324 * 89.99268 * 1 2 3 25 25 H 1.08990 * 109.46992 * 209.99790 * 1 2 3 26 26 H 1.09000 * 109.46914 * 329.99595 * 1 2 3 27 27 H 1.08005 * 126.28705 * 359.97438 * 3 2 1 28 28 H 0.97004 * 119.99736 * 0.02562 * 7 5 4 29 29 H 1.09002 * 109.47606 * 59.99848 * 8 7 5 30 30 H 1.08999 * 109.47299 * 299.99361 * 8 7 5 31 31 H 1.09002 * 109.46664 * 59.99658 * 9 8 7 32 32 H 1.08998 * 109.47308 * 300.00179 * 9 8 7 33 33 H 0.97000 * 120.00354 * 175.01784 * 14 13 11 34 34 H 1.09001 * 115.55457 * 328.99834 * 19 10 9 35 35 H 1.09004 * 117.49643 * 0.02562 * 20 19 10 36 36 H 1.08997 * 117.49838 * 145.01935 * 20 19 10 37 37 H 1.09006 * 117.49900 * 252.51071 * 21 20 19 38 38 H 1.08996 * 117.52328 * 107.48177 * 21 20 19 39 39 H 1.07994 * 125.99311 * 179.73854 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2496 1.0895 0.0000 4 6 3.5599 0.6552 -0.0006 5 6 4.7639 1.5060 -0.0013 6 8 4.6527 2.7169 -0.0010 7 7 5.9878 0.9417 -0.0024 8 6 7.1842 1.7872 -0.0026 9 6 8.4332 0.9034 -0.0032 10 7 9.6297 1.7489 -0.0040 11 6 10.1881 2.1440 -1.1902 12 1 10.5762 3.1462 -1.2971 13 6 10.2555 1.2563 -2.2552 14 7 10.1565 -0.0383 -2.0403 15 14 10.4867 1.8994 -3.9938 16 1 11.9371 1.9893 -4.2996 17 1 9.8347 0.9738 -4.9548 18 1 9.8722 3.2463 -4.1092 19 6 10.2285 2.1717 1.2644 20 6 11.4303 3.1162 1.1981 21 6 11.6295 1.6514 1.5922 22 6 3.5311 -0.7574 -0.0067 23 7 2.2827 -1.1356 -0.0007 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3633 -0.8899 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 1.9166 2.1170 -0.0004 28 1 6.0765 -0.0242 -0.0030 29 1 7.1850 2.4160 0.8878 30 1 7.1840 2.4169 -0.8922 31 1 8.4327 0.2743 -0.8933 32 1 8.4334 0.2739 0.8866 33 1 10.1309 -0.6539 -2.7895 34 1 9.5325 2.2998 2.0934 35 1 11.7751 3.4234 0.2107 36 1 11.5250 3.8662 1.9834 37 1 11.8553 1.4376 2.6370 38 1 12.1054 0.9942 0.8645 39 1 4.3918 -1.4097 -0.0127 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317546555.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:00:54 Heat of formation + Delta-G solvation = 90.511025 kcal Electronic energy + Delta-G solvation = -21048.008405 eV Core-core repulsion = 17801.181756 eV Total energy + Delta-G solvation = -3246.826649 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -41.38747 -38.74929 -37.03563 -34.65253 -33.63538 -33.05927 -30.90009 -30.30678 -28.06186 -26.76004 -24.41958 -22.76041 -21.64158 -21.27142 -20.90821 -19.92006 -19.65204 -17.90534 -16.28879 -15.80695 -15.67614 -15.48962 -15.24812 -14.66620 -14.63529 -14.47019 -13.84670 -13.43134 -13.04310 -13.02142 -12.81894 -12.57073 -12.50395 -11.88952 -11.52185 -11.15531 -11.02138 -10.71235 -10.68980 -10.31535 -10.11677 -9.82767 -9.72139 -9.59692 -9.54289 -9.25030 -8.82089 -8.50890 -8.35851 -6.56968 -5.82437 -3.48949 1.50438 2.17518 2.20292 3.33757 3.42097 3.46683 3.69777 3.76111 4.29667 4.45331 4.65393 4.79290 4.85042 4.96427 5.05535 5.19760 5.30254 5.34984 5.36588 5.71259 5.93822 6.08245 6.15476 6.23966 6.28990 6.37230 6.53136 6.57453 6.65573 6.66021 6.94125 7.02452 7.11765 7.25942 7.40903 7.52664 7.78229 8.04078 8.46700 8.70585 9.11496 9.72103 10.30122 11.12932 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.020086 B = 0.003934 C = 0.003591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.704157 B = 7116.376959 C = 7795.855307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.369 5.369 3 C 0.121 3.879 4 C -0.285 4.285 5 C 0.587 3.413 6 O -0.558 6.558 7 N -0.715 5.715 8 C 0.101 3.899 9 C 0.141 3.859 10 N -0.547 5.547 11 C -0.261 4.261 12 H 0.065 0.935 13 C 0.017 3.983 14 N -0.883 5.883 15 Si 0.895 3.105 16 H -0.285 1.285 17 H -0.288 1.288 18 H -0.276 1.276 19 C 0.119 3.881 20 C -0.195 4.195 21 C -0.219 4.219 22 C 0.083 3.917 23 N -0.302 5.302 24 H 0.078 0.922 25 H 0.091 0.909 26 H 0.090 0.910 27 H 0.187 0.813 28 H 0.396 0.604 29 H 0.051 0.949 30 H 0.066 0.934 31 H 0.099 0.901 32 H 0.032 0.968 33 H 0.255 0.745 34 H 0.087 0.913 35 H 0.097 0.903 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.092 0.908 39 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.660 -1.526 5.250 16.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.149 5.149 3 C -0.030 4.030 4 C -0.300 4.300 5 C 0.374 3.626 6 O -0.438 6.438 7 N -0.365 5.365 8 C -0.025 4.025 9 C 0.014 3.986 10 N -0.264 5.264 11 C -0.391 4.391 12 H 0.083 0.917 13 C -0.184 4.184 14 N -0.524 5.524 15 Si 0.724 3.276 16 H -0.211 1.211 17 H -0.214 1.214 18 H -0.201 1.201 19 C 0.011 3.989 20 C -0.233 4.233 21 C -0.260 4.260 22 C -0.105 4.105 23 N -0.122 5.122 24 H 0.097 0.903 25 H 0.110 0.890 26 H 0.109 0.891 27 H 0.204 0.796 28 H 0.229 0.771 29 H 0.069 0.931 30 H 0.084 0.916 31 H 0.116 0.884 32 H 0.051 0.949 33 H 0.065 0.935 34 H 0.105 0.895 35 H 0.116 0.884 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.110 0.890 39 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -16.618 -1.822 5.118 17.483 hybrid contribution 0.746 0.467 -0.962 1.304 sum -15.872 -1.355 4.155 16.463 Atomic orbital electron populations 1.21949 0.73716 1.04815 1.03776 1.48397 1.07108 1.03949 1.55421 1.22958 0.90199 0.93617 0.96178 1.20446 0.93787 0.93616 1.22175 1.17233 0.82358 0.86862 0.76163 1.90746 1.86989 1.14253 1.51826 1.45852 1.05742 1.10551 1.74372 1.22313 0.83945 0.94793 1.01401 1.21009 0.83000 0.92290 1.02260 1.43169 1.25173 1.58094 0.99988 1.19030 1.36388 0.94880 0.88782 0.91745 1.25226 0.99103 0.94657 0.99409 1.70045 1.51202 1.00786 1.30416 0.86440 0.77971 0.78631 0.84593 1.21137 1.21412 1.20110 1.21245 0.87103 1.00306 0.90279 1.23018 1.05672 0.92506 1.02096 1.23337 1.06386 0.96740 0.99566 1.24142 0.95288 0.94118 0.96932 1.77160 1.02014 1.07777 1.25253 0.90349 0.88983 0.89133 0.79573 0.77058 0.93091 0.91556 0.88365 0.94905 0.93502 0.89527 0.88439 0.90775 0.91272 0.88960 0.79126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.55 11.44 59.85 0.68 1.23 16 2 N -0.37 -3.91 3.98 -67.60 -0.27 -4.18 16 3 C 0.12 1.42 11.30 -16.56 -0.19 1.23 16 4 C -0.29 -4.00 6.13 -105.07 -0.64 -4.64 16 5 C 0.59 10.16 7.81 -12.52 -0.10 10.07 16 6 O -0.56 -11.61 16.90 5.28 0.09 -11.52 16 7 N -0.72 -12.02 5.55 -61.38 -0.34 -12.36 16 8 C 0.10 2.02 6.00 -4.04 -0.02 2.00 16 9 C 0.14 3.08 5.45 -4.04 -0.02 3.06 16 10 N -0.55 -13.17 2.75 -165.66 -0.46 -13.62 16 11 C -0.26 -6.89 8.47 -15.06 -0.13 -7.02 16 12 H 0.06 1.72 6.74 -52.49 -0.35 1.37 16 13 C 0.02 0.45 4.98 -17.43 -0.09 0.36 16 14 N -0.88 -24.24 11.50 55.49 0.64 -23.60 16 15 Si 0.90 21.19 29.60 -169.99 -5.03 16.16 16 16 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 17 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 19 C 0.12 2.54 6.56 -67.93 -0.45 2.09 16 20 C -0.19 -3.86 9.80 -26.73 -0.26 -4.12 16 21 C -0.22 -4.46 10.36 -26.73 -0.28 -4.74 16 22 C 0.08 1.03 11.50 -16.98 -0.20 0.84 16 23 N -0.30 -3.85 12.50 30.86 0.39 -3.46 16 24 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.19 1.75 8.06 -52.48 -0.42 1.33 16 28 H 0.40 5.58 7.43 -40.82 -0.30 5.28 16 29 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 31 H 0.10 2.39 5.59 -51.93 -0.29 2.10 16 32 H 0.03 0.67 8.07 -51.93 -0.42 0.25 16 33 H 0.26 6.78 8.32 -40.82 -0.34 6.44 16 34 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 35 H 0.10 2.10 6.46 -51.93 -0.34 1.77 16 36 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 37 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.09 2.14 8.14 -51.93 -0.42 1.72 16 39 H 0.19 1.84 7.50 -52.49 -0.39 1.45 16 LS Contribution 335.34 15.07 5.05 5.05 Total: -1.00 -32.90 335.34 -7.07 -39.97 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -5.46 Total: 7.19 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: -1.68 Total: 0.36 kcal Atomic # 7 Polarization: -57.18 SS G_CDS: -0.04 Total: -57.22 kcal Atomic # 8 Polarization: -11.61 SS G_CDS: 0.09 Total: -11.52 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.03 Total: 16.16 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.90 -7.07 -39.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317546555.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.484 kcal (2) G-P(sol) polarization free energy of solvation -32.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds