Wall clock time and date at job start Fri Apr 10 2020 14:01:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34259 * 125.75154 * 2 1 4 4 C 1.38051 * 107.41514 * 180.18415 * 3 2 1 5 5 C 1.47428 * 126.41222 * 179.87548 * 4 3 2 6 6 O 1.21606 * 120.00300 * 359.70723 * 5 4 3 7 7 N 1.34779 * 119.99876 * 179.71375 * 5 4 3 8 8 C 1.46500 * 120.00196 * 179.97438 * 7 5 4 9 9 H 1.09000 * 109.46967 * 325.00170 * 8 7 5 10 10 C 1.52997 * 109.47170 * 204.99986 * 8 7 5 11 11 N 1.46505 * 109.47212 * 54.99826 * 10 8 7 12 12 C 1.36936 * 119.99992 * 179.97438 * 11 10 8 13 13 H 1.08006 * 119.99834 * 0.02562 * 12 11 10 14 14 C 1.38801 * 120.00093 * 180.02562 * 12 11 10 15 15 N 1.31619 * 120.00176 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 120.00265 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.46951 * 89.99797 * 16 14 12 18 18 H 1.48500 * 109.47313 * 210.00112 * 16 14 12 19 19 H 1.48501 * 109.46991 * 330.00153 * 16 14 12 20 20 C 1.52994 * 109.46849 * 84.99779 * 8 7 5 21 21 C 1.52999 * 117.50412 * 8.74867 * 20 8 7 22 22 C 1.53002 * 117.50104 * 300.08575 * 20 8 7 23 23 C 1.41289 * 107.17099 * 359.60963 * 4 3 2 24 24 N 1.30450 * 108.01974 * 0.24132 * 23 4 3 25 25 H 1.08997 * 109.47015 * 270.26431 * 1 2 3 26 26 H 1.08994 * 109.47062 * 30.27261 * 1 2 3 27 27 H 1.09003 * 109.46902 * 150.27409 * 1 2 3 28 28 H 1.07997 * 126.29317 * 0.03444 * 3 2 1 29 29 H 0.96998 * 119.99752 * 359.97438 * 7 5 4 30 30 H 1.09002 * 109.47153 * 294.99818 * 10 8 7 31 31 H 1.09001 * 109.46832 * 175.00009 * 10 8 7 32 32 H 0.96996 * 119.99606 * 0.02562 * 11 10 8 33 33 H 0.97001 * 120.00803 * 179.97438 * 15 14 12 34 34 H 1.09003 * 115.54830 * 154.41823 * 20 8 7 35 35 H 1.09003 * 117.49323 * 359.97438 * 21 20 8 36 36 H 1.09003 * 117.50071 * 145.01968 * 21 20 8 37 37 H 1.09000 * 117.50257 * 214.97832 * 22 20 8 38 38 H 1.09002 * 117.49965 * 359.97438 * 22 20 8 39 39 H 1.07996 * 125.99314 * 180.24013 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2494 1.0896 0.0000 4 6 3.5599 0.6553 -0.0042 5 6 4.7638 1.5062 -0.0084 6 8 4.6525 2.7171 -0.0136 7 7 5.9878 0.9420 -0.0064 8 6 7.1842 1.7874 -0.0111 9 1 6.9947 2.6818 -0.6046 10 6 8.3548 1.0113 -0.6178 11 7 7.9799 0.5222 -1.9469 12 6 8.8746 -0.2041 -2.6867 13 1 9.8565 -0.4166 -2.2901 14 6 8.5197 -0.6670 -3.9462 15 7 7.3234 -0.4076 -4.4297 16 14 9.7399 -1.6584 -4.9551 17 1 9.5760 -3.1026 -4.6507 18 1 9.4916 -1.4258 -6.4006 19 1 11.1223 -1.2348 -4.6158 20 6 7.5289 2.1911 1.4238 21 6 6.7518 1.5138 2.5544 22 6 6.4777 2.9794 2.2078 23 6 3.5312 -0.7573 0.0024 24 7 2.2827 -1.1355 0.0048 25 1 -0.3633 0.0047 1.0276 26 1 -0.3633 0.8875 -0.5180 27 1 -0.3633 -0.8925 -0.5096 28 1 1.9165 2.1170 0.0005 29 1 6.0765 -0.0240 -0.0020 30 1 8.6018 0.1657 0.0242 31 1 9.2207 1.6678 -0.7031 32 1 7.0983 0.7134 -2.3032 33 1 7.0754 -0.7308 -5.3100 34 1 8.5766 2.4301 1.6061 35 1 5.9946 0.7809 2.2758 36 1 7.2882 1.3076 3.4806 37 1 6.8339 3.7367 2.9062 38 1 5.5408 3.2108 1.7012 39 1 4.3919 -1.4096 0.0050 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483543756.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:01:19 Heat of formation + Delta-G solvation = 85.560723 kcal Electronic energy + Delta-G solvation = -21681.845936 eV Core-core repulsion = 18434.804626 eV Total energy + Delta-G solvation = -3247.041310 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.30465 -39.52072 -36.86012 -34.82817 -33.63180 -32.98321 -31.13463 -30.21626 -28.28051 -26.88318 -24.05580 -22.82789 -22.15540 -21.43789 -21.04425 -20.07292 -19.46266 -17.88612 -17.10596 -15.94269 -15.77172 -15.59984 -15.53842 -14.67024 -14.49190 -14.17709 -13.58493 -13.42755 -13.21975 -12.95660 -12.89113 -12.68317 -12.61341 -11.99353 -11.56233 -11.27868 -11.14318 -11.00336 -10.85091 -10.79854 -10.17147 -10.03225 -9.75129 -9.59395 -9.52727 -9.44390 -8.88192 -8.70119 -8.44339 -6.92267 -5.74597 -3.04373 1.59691 2.28583 2.31522 3.44630 3.49981 3.51791 3.62174 3.77041 4.15455 4.39893 4.59557 4.74484 4.88687 4.95657 5.01178 5.15225 5.25936 5.27971 5.29603 5.47980 5.57751 5.62060 5.77743 5.90338 5.93698 6.09210 6.11053 6.30936 6.40024 6.44971 6.56195 6.61542 6.76760 6.77213 7.04925 7.53588 7.71196 8.00971 8.43079 8.68593 9.55010 10.11497 10.47032 11.47574 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.013575 B = 0.005473 C = 0.004175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.176528 B = 5114.904369 C = 6704.762515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.369 5.369 3 C 0.122 3.878 4 C -0.285 4.285 5 C 0.597 3.403 6 O -0.555 6.555 7 N -0.704 5.704 8 C 0.170 3.830 9 H 0.091 0.909 10 C 0.148 3.852 11 N -0.731 5.731 12 C -0.242 4.242 13 H 0.071 0.929 14 C -0.011 4.011 15 N -0.930 5.930 16 Si 0.906 3.094 17 H -0.290 1.290 18 H -0.292 1.292 19 H -0.282 1.282 20 C -0.160 4.160 21 C -0.177 4.177 22 C -0.187 4.187 23 C 0.088 3.912 24 N -0.301 5.301 25 H 0.077 0.923 26 H 0.090 0.910 27 H 0.092 0.908 28 H 0.186 0.814 29 H 0.403 0.597 30 H 0.026 0.974 31 H 0.033 0.967 32 H 0.386 0.614 33 H 0.255 0.745 34 H 0.108 0.892 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.118 0.882 39 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.322 2.649 13.387 17.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.148 5.148 3 C -0.029 4.029 4 C -0.300 4.300 5 C 0.385 3.615 6 O -0.435 6.435 7 N -0.353 5.353 8 C 0.065 3.935 9 H 0.109 0.891 10 C 0.020 3.980 11 N -0.376 5.376 12 C -0.373 4.373 13 H 0.088 0.912 14 C -0.208 4.208 15 N -0.579 5.579 16 Si 0.737 3.263 17 H -0.217 1.217 18 H -0.218 1.218 19 H -0.208 1.208 20 C -0.180 4.180 21 C -0.215 4.215 22 C -0.224 4.224 23 C -0.099 4.099 24 N -0.121 5.121 25 H 0.095 0.905 26 H 0.108 0.892 27 H 0.110 0.890 28 H 0.203 0.797 29 H 0.238 0.762 30 H 0.044 0.956 31 H 0.051 0.949 32 H 0.221 0.779 33 H 0.065 0.935 34 H 0.126 0.874 35 H 0.111 0.889 36 H 0.103 0.897 37 H 0.101 0.899 38 H 0.136 0.864 39 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -12.203 2.410 13.311 18.219 hybrid contribution 1.003 -0.321 -0.789 1.316 sum -11.200 2.089 12.522 16.930 Atomic orbital electron populations 1.21938 0.73804 1.04913 1.03576 1.48384 1.07078 1.03978 1.55354 1.22918 0.90188 0.93575 0.96185 1.20323 0.93590 0.93593 1.22496 1.17161 0.82329 0.86821 0.75191 1.90669 1.86926 1.14133 1.51797 1.45727 1.04848 1.10619 1.74136 1.20724 0.84710 0.94630 0.93406 0.89094 1.20913 0.93552 0.95562 0.88007 1.42355 1.16870 1.64393 1.14013 1.19209 0.95427 1.25455 0.97186 0.91153 1.24734 0.96847 1.01490 0.97688 1.69671 1.19144 1.50559 1.18485 0.86207 0.80423 0.79978 0.79659 1.21747 1.21845 1.20773 1.22699 0.97361 1.05153 0.92774 1.22886 1.03637 0.96311 0.98632 1.23338 1.02289 0.93679 1.03114 1.24139 0.95278 0.94127 0.96392 1.77178 1.02019 1.07629 1.25252 0.90470 0.89162 0.88953 0.79668 0.76175 0.95611 0.94883 0.77927 0.93538 0.87390 0.88900 0.89684 0.89941 0.86449 0.79203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.66 11.44 59.85 0.68 1.34 16 2 N -0.37 -4.34 3.98 -67.60 -0.27 -4.61 16 3 C 0.12 1.54 11.30 -16.56 -0.19 1.35 16 4 C -0.29 -4.24 6.13 -105.06 -0.64 -4.89 16 5 C 0.60 10.03 6.65 -12.52 -0.08 9.95 16 6 O -0.55 -10.52 13.92 5.27 0.07 -10.45 16 7 N -0.70 -11.45 3.05 -54.88 -0.17 -11.62 16 8 C 0.17 2.91 2.59 -67.94 -0.18 2.73 16 9 H 0.09 1.77 7.58 -51.93 -0.39 1.37 16 10 C 0.15 2.88 5.80 -4.04 -0.02 2.86 16 11 N -0.73 -18.10 5.43 -59.91 -0.33 -18.43 16 12 C -0.24 -6.66 9.99 -15.06 -0.15 -6.81 16 13 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 14 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 15 N -0.93 -28.13 13.06 55.49 0.72 -27.41 16 16 Si 0.91 22.33 29.55 -169.99 -5.02 17.30 16 17 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 18 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 20 C -0.16 -2.32 5.70 -90.62 -0.52 -2.84 16 21 C -0.18 -2.35 9.74 -26.69 -0.26 -2.61 16 22 C -0.19 -2.65 9.82 -26.69 -0.26 -2.92 16 23 C 0.09 1.26 11.50 -16.98 -0.20 1.06 16 24 N -0.30 -4.32 12.50 30.86 0.39 -3.93 16 25 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.19 1.85 8.06 -52.49 -0.42 1.43 16 29 H 0.40 6.28 7.56 -40.82 -0.31 5.97 16 30 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.39 10.26 7.33 -40.82 -0.30 9.97 16 33 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 34 H 0.11 1.44 8.11 -51.93 -0.42 1.02 16 35 H 0.09 1.27 6.67 -51.93 -0.35 0.92 16 36 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 37 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 38 H 0.12 1.92 5.01 -51.93 -0.26 1.66 16 39 H 0.19 2.35 7.50 -52.49 -0.39 1.95 16 LS Contribution 329.94 15.07 4.97 4.97 Total: -1.00 -33.92 329.94 -6.89 -40.81 By element: Atomic # 1 Polarization: 19.89 SS G_CDS: -5.35 Total: 14.54 kcal Atomic # 6 Polarization: 0.73 SS G_CDS: -1.91 Total: -1.18 kcal Atomic # 7 Polarization: -66.35 SS G_CDS: 0.35 Total: -66.00 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.07 Total: -10.45 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.92 -6.89 -40.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483543756.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.371 kcal (2) G-P(sol) polarization free energy of solvation -33.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds