Wall clock time and date at job start Fri Apr 10 2020 14:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34259 * 125.75154 * 2 1 4 4 C 1.38051 * 107.41514 * 180.18415 * 3 2 1 5 5 C 1.47428 * 126.41222 * 179.87548 * 4 3 2 6 6 O 1.21606 * 120.00300 * 359.70723 * 5 4 3 7 7 N 1.34779 * 119.99876 * 179.71375 * 5 4 3 8 8 C 1.46500 * 120.00196 * 179.97438 * 7 5 4 9 9 H 1.09000 * 109.46967 * 325.00170 * 8 7 5 10 10 C 1.52997 * 109.47170 * 204.99986 * 8 7 5 11 11 N 1.46505 * 109.47212 * 54.99826 * 10 8 7 12 12 C 1.36936 * 119.99992 * 179.97438 * 11 10 8 13 13 H 1.08006 * 119.99834 * 0.02562 * 12 11 10 14 14 C 1.38801 * 120.00093 * 180.02562 * 12 11 10 15 15 N 1.31619 * 120.00176 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 120.00265 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.46951 * 89.99797 * 16 14 12 18 18 H 1.48500 * 109.47313 * 210.00112 * 16 14 12 19 19 H 1.48501 * 109.46991 * 330.00153 * 16 14 12 20 20 C 1.52994 * 109.46849 * 84.99779 * 8 7 5 21 21 C 1.52999 * 117.50412 * 8.74867 * 20 8 7 22 22 C 1.53002 * 117.50104 * 300.08575 * 20 8 7 23 23 C 1.41289 * 107.17099 * 359.60963 * 4 3 2 24 24 N 1.30450 * 108.01974 * 0.24132 * 23 4 3 25 25 H 1.08997 * 109.47015 * 270.26431 * 1 2 3 26 26 H 1.08994 * 109.47062 * 30.27261 * 1 2 3 27 27 H 1.09003 * 109.46902 * 150.27409 * 1 2 3 28 28 H 1.07997 * 126.29317 * 0.03444 * 3 2 1 29 29 H 0.96998 * 119.99752 * 359.97438 * 7 5 4 30 30 H 1.09002 * 109.47153 * 294.99818 * 10 8 7 31 31 H 1.09001 * 109.46832 * 175.00009 * 10 8 7 32 32 H 0.96996 * 119.99606 * 0.02562 * 11 10 8 33 33 H 0.97001 * 120.00803 * 179.97438 * 15 14 12 34 34 H 1.09003 * 115.54830 * 154.41823 * 20 8 7 35 35 H 1.09003 * 117.49323 * 359.97438 * 21 20 8 36 36 H 1.09003 * 117.50071 * 145.01968 * 21 20 8 37 37 H 1.09000 * 117.50257 * 214.97832 * 22 20 8 38 38 H 1.09002 * 117.49965 * 359.97438 * 22 20 8 39 39 H 1.07996 * 125.99314 * 180.24013 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2494 1.0896 0.0000 4 6 3.5599 0.6553 -0.0042 5 6 4.7638 1.5062 -0.0084 6 8 4.6525 2.7171 -0.0136 7 7 5.9878 0.9420 -0.0064 8 6 7.1842 1.7874 -0.0111 9 1 6.9947 2.6818 -0.6046 10 6 8.3548 1.0113 -0.6178 11 7 7.9799 0.5222 -1.9469 12 6 8.8746 -0.2041 -2.6867 13 1 9.8565 -0.4166 -2.2901 14 6 8.5197 -0.6670 -3.9462 15 7 7.3234 -0.4076 -4.4297 16 14 9.7399 -1.6584 -4.9551 17 1 9.5760 -3.1026 -4.6507 18 1 9.4916 -1.4258 -6.4006 19 1 11.1223 -1.2348 -4.6158 20 6 7.5289 2.1911 1.4238 21 6 6.7518 1.5138 2.5544 22 6 6.4777 2.9794 2.2078 23 6 3.5312 -0.7573 0.0024 24 7 2.2827 -1.1355 0.0048 25 1 -0.3633 0.0047 1.0276 26 1 -0.3633 0.8875 -0.5180 27 1 -0.3633 -0.8925 -0.5096 28 1 1.9165 2.1170 0.0005 29 1 6.0765 -0.0240 -0.0020 30 1 8.6018 0.1657 0.0242 31 1 9.2207 1.6678 -0.7031 32 1 7.0983 0.7134 -2.3032 33 1 7.0754 -0.7308 -5.3100 34 1 8.5766 2.4301 1.6061 35 1 5.9946 0.7809 2.2758 36 1 7.2882 1.3076 3.4806 37 1 6.8339 3.7367 2.9062 38 1 5.5408 3.2108 1.7012 39 1 4.3919 -1.4096 0.0050 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483543756.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:01:18 Heat of formation + Delta-G solvation = 62.435866 kcal Electronic energy + Delta-G solvation = -21682.848705 eV Core-core repulsion = 18434.804626 eV Total energy + Delta-G solvation = -3248.044079 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.34042 -40.79474 -38.16050 -36.50299 -34.85911 -34.21947 -32.93700 -31.35179 -29.80231 -27.80590 -25.92242 -24.03323 -23.39347 -22.89846 -22.03494 -21.24230 -20.73967 -19.32974 -18.74466 -17.19349 -17.08672 -16.84816 -16.46352 -16.40059 -15.58460 -15.41419 -15.14079 -14.94636 -14.79669 -14.33861 -13.86239 -13.62704 -13.45977 -13.40692 -13.08479 -12.81334 -12.66674 -12.61378 -12.25969 -12.08444 -12.05455 -11.80445 -11.21122 -10.95835 -10.82169 -10.69119 -10.56269 -9.93645 -9.59817 -8.97621 -7.91170 -5.20563 0.57032 1.15933 1.48032 1.50039 1.51308 1.59688 2.36297 2.54059 2.58547 3.02232 3.43241 3.52569 3.70572 3.83463 4.03848 4.13584 4.17254 4.18189 4.24399 4.43522 4.47638 4.56460 4.59291 4.67151 4.70049 4.78437 4.89298 4.95089 5.11577 5.21662 5.32104 5.39073 5.46676 5.53635 5.68982 5.90603 6.29151 6.49692 6.72102 7.36812 7.38856 8.10981 8.34933 9.31849 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.013575 B = 0.005473 C = 0.004175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.176528 B = 5114.904369 C = 6704.762515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.361 5.361 3 C 0.133 3.867 4 C -0.316 4.316 5 C 0.596 3.404 6 O -0.582 6.582 7 N -0.701 5.701 8 C 0.180 3.820 9 H 0.062 0.938 10 C 0.150 3.850 11 N -0.742 5.742 12 C -0.242 4.242 13 H 0.079 0.921 14 C -0.073 4.073 15 N -0.969 5.969 16 Si 0.972 3.028 17 H -0.286 1.286 18 H -0.300 1.300 19 H -0.269 1.269 20 C -0.166 4.166 21 C -0.163 4.163 22 C -0.188 4.188 23 C 0.082 3.918 24 N -0.325 5.325 25 H 0.098 0.902 26 H 0.118 0.882 27 H 0.096 0.904 28 H 0.211 0.789 29 H 0.406 0.594 30 H 0.040 0.960 31 H 0.038 0.962 32 H 0.374 0.626 33 H 0.249 0.751 34 H 0.124 0.876 35 H 0.086 0.914 36 H 0.108 0.892 37 H 0.101 0.899 38 H 0.095 0.905 39 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.366 2.427 14.733 18.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.139 5.139 3 C -0.020 4.020 4 C -0.330 4.330 5 C 0.385 3.615 6 O -0.465 6.465 7 N -0.351 5.351 8 C 0.075 3.925 9 H 0.080 0.920 10 C 0.024 3.976 11 N -0.386 5.386 12 C -0.373 4.373 13 H 0.097 0.903 14 C -0.265 4.265 15 N -0.620 5.620 16 Si 0.801 3.199 17 H -0.213 1.213 18 H -0.227 1.227 19 H -0.194 1.194 20 C -0.186 4.186 21 C -0.200 4.200 22 C -0.225 4.225 23 C -0.105 4.105 24 N -0.145 5.145 25 H 0.116 0.884 26 H 0.136 0.864 27 H 0.114 0.886 28 H 0.228 0.772 29 H 0.241 0.759 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.206 0.794 33 H 0.058 0.942 34 H 0.142 0.858 35 H 0.105 0.895 36 H 0.126 0.874 37 H 0.120 0.880 38 H 0.113 0.887 39 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -12.236 2.169 14.704 19.252 hybrid contribution 0.929 -0.206 -1.148 1.491 sum -11.307 1.962 13.556 17.762 Atomic orbital electron populations 1.22404 0.70835 1.06532 1.05488 1.48790 1.08643 1.03010 1.53507 1.23302 0.89587 0.94758 0.94396 1.20310 0.93821 0.93760 1.25157 1.17427 0.82843 0.86690 0.74492 1.90647 1.87304 1.15265 1.53256 1.45669 1.04697 1.10607 1.74082 1.20474 0.84161 0.93128 0.94758 0.91986 1.21036 0.94607 0.96083 0.85921 1.42526 1.16007 1.64309 1.15713 1.19637 0.95951 1.24421 0.97340 0.90262 1.25524 0.98552 1.03341 0.99110 1.69840 1.21145 1.52402 1.18577 0.85164 0.78824 0.78499 0.77395 1.21322 1.22708 1.19385 1.22621 0.98373 1.06311 0.91268 1.22943 1.02882 0.95445 0.98712 1.23284 1.01114 0.94910 1.03200 1.24290 0.95748 0.94101 0.96356 1.77116 1.02264 1.09125 1.26017 0.88384 0.86375 0.88570 0.77211 0.75852 0.94193 0.94454 0.79361 0.94243 0.85764 0.89527 0.87365 0.88016 0.88715 0.78503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.94 11.44 127.77 1.46 2.40 16 2 N -0.36 -7.97 3.98 -367.78 -1.46 -9.44 16 3 C 0.13 3.19 11.30 84.28 0.95 4.14 16 4 C -0.32 -9.42 6.13 -20.15 -0.12 -9.54 16 5 C 0.60 20.41 6.65 86.66 0.58 20.99 16 6 O -0.58 -22.57 13.92 -4.05 -0.06 -22.63 16 7 N -0.70 -23.16 3.05 -445.81 -1.36 -24.52 16 8 C 0.18 6.18 2.59 44.99 0.12 6.29 16 9 H 0.06 2.49 7.58 -2.39 -0.02 2.48 16 10 C 0.15 5.79 5.80 86.38 0.50 6.29 16 11 N -0.74 -37.01 5.43 -343.45 -1.87 -38.88 16 12 C -0.24 -13.25 9.99 84.03 0.84 -12.41 16 13 H 0.08 4.13 7.83 -2.91 -0.02 4.10 16 14 C -0.07 -4.17 5.50 84.86 0.47 -3.70 16 15 N -0.97 -59.65 13.06 21.65 0.28 -59.37 16 16 Si 0.97 45.99 29.55 68.60 2.03 48.02 16 17 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 18 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 19 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 20 C -0.17 -4.60 5.70 -10.80 -0.06 -4.66 16 21 C -0.16 -4.00 9.74 30.62 0.30 -3.70 16 22 C -0.19 -5.10 9.82 30.62 0.30 -4.80 16 23 C 0.08 2.35 11.50 85.65 0.99 3.34 16 24 N -0.32 -9.15 12.50 -56.28 -0.70 -9.85 16 25 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.12 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.21 3.82 8.06 -2.91 -0.02 3.80 16 29 H 0.41 12.85 7.56 -92.71 -0.70 12.15 16 30 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.37 20.38 7.33 -92.71 -0.68 19.70 16 33 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 34 H 0.12 3.04 8.11 -2.39 -0.02 3.02 16 35 H 0.09 2.26 6.67 -2.39 -0.02 2.24 16 36 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 37 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 38 H 0.09 3.09 5.01 -2.39 -0.01 3.08 16 39 H 0.20 5.00 7.50 -2.91 -0.02 4.98 16 Total: -1.00 -73.13 329.94 2.88 -70.25 By element: Atomic # 1 Polarization: 42.07 SS G_CDS: -0.30 Total: 41.77 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: 6.31 Total: 4.64 kcal Atomic # 7 Polarization: -136.95 SS G_CDS: -5.11 Total: -142.06 kcal Atomic # 8 Polarization: -22.57 SS G_CDS: -0.06 Total: -22.63 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal Total: -73.13 2.88 -70.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483543756.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.688 kcal (2) G-P(sol) polarization free energy of solvation -73.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds