Wall clock time and date at job start Fri Apr 10 2020 14:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34257 * 125.75422 * 2 1 4 4 C 1.38049 * 107.41689 * 180.02562 * 3 2 1 5 5 C 1.47426 * 126.41581 * 179.97438 * 4 3 2 6 6 O 1.21600 * 120.00012 * 0.02562 * 5 4 3 7 7 N 1.34774 * 119.99852 * 179.97438 * 5 4 3 8 8 C 1.46506 * 120.00072 * 179.97438 * 7 5 4 9 9 C 1.52997 * 109.47289 * 180.02562 * 8 7 5 10 10 H 1.08993 * 109.47322 * 64.99970 * 9 8 7 11 11 N 1.46502 * 109.47004 * 304.99911 * 9 8 7 12 12 C 1.36937 * 120.00242 * 155.00151 * 11 9 8 13 13 H 1.08000 * 119.99698 * 0.02562 * 12 11 9 14 14 C 1.38808 * 120.00426 * 179.97438 * 12 11 9 15 15 N 1.31619 * 120.00011 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00285 * 180.02562 * 14 12 11 17 17 H 1.48508 * 109.46907 * 359.97438 * 16 14 12 18 18 H 1.48490 * 109.47423 * 119.99977 * 16 14 12 19 19 H 1.48502 * 109.47007 * 240.00346 * 16 14 12 20 20 C 1.53001 * 109.46997 * 185.00271 * 9 8 7 21 21 C 1.53000 * 117.49406 * 248.74401 * 20 9 8 22 22 C 1.52999 * 117.49917 * 180.08862 * 20 9 8 23 23 C 1.41296 * 107.17122 * 0.24282 * 4 3 2 24 24 N 1.30457 * 108.01653 * 359.59264 * 23 4 3 25 25 H 1.08997 * 109.47238 * 89.99617 * 1 2 3 26 26 H 1.09000 * 109.47047 * 209.99765 * 1 2 3 27 27 H 1.09006 * 109.46772 * 329.99436 * 1 2 3 28 28 H 1.08001 * 126.29637 * 359.97438 * 3 2 1 29 29 H 0.97001 * 120.00676 * 359.97438 * 7 5 4 30 30 H 1.09001 * 109.47060 * 300.00359 * 8 7 5 31 31 H 1.09004 * 109.47073 * 59.99848 * 8 7 5 32 32 H 0.97004 * 119.99954 * 335.00241 * 11 9 8 33 33 H 0.96993 * 120.00405 * 179.97438 * 15 14 12 34 34 H 1.09000 * 115.55061 * 34.41350 * 20 9 8 35 35 H 1.09001 * 117.50211 * 0.02562 * 21 20 9 36 36 H 1.09004 * 117.49834 * 145.02254 * 21 20 9 37 37 H 1.09000 * 117.49978 * 214.98132 * 22 20 9 38 38 H 1.09003 * 117.49992 * 359.96808 * 22 20 9 39 39 H 1.08000 * 125.99214 * 179.73845 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2495 1.0895 0.0000 4 6 3.5598 0.6552 -0.0006 5 6 4.7638 1.5060 -0.0013 6 8 4.6526 2.7169 -0.0010 7 7 5.9877 0.9417 -0.0013 8 6 7.1842 1.7871 -0.0026 9 6 8.4332 0.9034 -0.0030 10 1 8.4783 0.3385 -0.9340 11 7 8.3750 -0.0247 1.1290 12 6 9.0561 -1.2115 1.0772 13 1 9.6366 -1.4631 0.2019 14 6 9.0014 -2.0907 2.1499 15 7 8.2945 -1.7839 3.2169 16 14 9.9312 -3.7093 2.0795 17 1 10.6432 -3.8150 0.7805 18 1 10.9156 -3.7635 3.1898 19 1 8.9734 -4.8365 2.2115 20 6 9.6796 1.7820 0.1214 21 6 10.6022 1.8756 -1.0955 22 6 11.0394 1.0808 0.1374 23 6 3.5311 -0.7574 -0.0067 24 7 2.2826 -1.1356 -0.0007 25 1 -0.3633 0.0001 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5140 28 1 1.9166 2.1170 -0.0004 29 1 6.0765 -0.0243 -0.0005 30 1 7.1840 2.4156 -0.8932 31 1 7.1848 2.4173 0.8868 32 1 7.8539 0.2014 1.9153 33 1 8.2559 -2.3983 3.9664 34 1 9.5662 2.6744 0.7369 35 1 10.3209 1.3116 -1.9849 36 1 11.0961 2.8295 -1.2805 37 1 11.8207 1.5121 0.7632 38 1 11.0460 -0.0064 0.0598 39 1 4.3918 -1.4097 -0.0126 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713103969.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:00:32 Heat of formation + Delta-G solvation = 77.960711 kcal Electronic energy + Delta-G solvation = -21267.169004 eV Core-core repulsion = 18019.798133 eV Total energy + Delta-G solvation = -3247.370871 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.26238 -38.86783 -37.41543 -34.56162 -33.56221 -33.19922 -30.96744 -30.21172 -28.23021 -26.86775 -23.91007 -22.89612 -21.77656 -21.62293 -20.87143 -19.96386 -19.37404 -17.91364 -17.11132 -15.70949 -15.68424 -15.48964 -15.09642 -14.67551 -14.49657 -14.28055 -13.85222 -13.51167 -13.14713 -13.06603 -12.82520 -12.68923 -12.64506 -11.98502 -11.35404 -11.13829 -10.99474 -10.86282 -10.83784 -10.67596 -10.07805 -9.91469 -9.65018 -9.57935 -9.42698 -9.26589 -8.96850 -8.75600 -8.39198 -7.02549 -5.79837 -3.09311 1.60478 2.31749 2.32664 3.40721 3.46901 3.49254 3.72197 3.81623 4.40599 4.44874 4.61406 4.74971 4.88627 5.00865 5.14941 5.27357 5.31035 5.49464 5.50084 5.54801 5.63318 5.80517 5.82571 5.95331 6.07950 6.11382 6.21218 6.45148 6.49127 6.57402 6.64647 6.77978 6.80930 6.98962 7.02974 7.55711 7.67452 8.08904 8.36991 8.71979 9.49379 10.04031 10.40235 11.41959 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.014798 B = 0.004976 C = 0.003900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.711035 B = 5625.444078 C = 7177.015287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.370 5.370 3 C 0.120 3.880 4 C -0.286 4.286 5 C 0.592 3.408 6 O -0.567 6.567 7 N -0.708 5.708 8 C 0.121 3.879 9 C 0.193 3.807 10 H 0.055 0.945 11 N -0.717 5.717 12 C -0.237 4.237 13 H 0.071 0.929 14 C -0.009 4.009 15 N -0.928 5.928 16 Si 0.901 3.099 17 H -0.281 1.281 18 H -0.293 1.293 19 H -0.292 1.292 20 C -0.158 4.158 21 C -0.196 4.196 22 C -0.156 4.156 23 C 0.090 3.910 24 N -0.301 5.301 25 H 0.077 0.923 26 H 0.091 0.909 27 H 0.089 0.911 28 H 0.186 0.814 29 H 0.409 0.591 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.386 0.614 33 H 0.255 0.745 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.105 0.895 39 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.867 5.548 -8.032 14.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.149 5.149 3 C -0.031 4.031 4 C -0.300 4.300 5 C 0.379 3.621 6 O -0.447 6.447 7 N -0.358 5.358 8 C -0.003 4.003 9 C 0.082 3.918 10 H 0.073 0.927 11 N -0.358 5.358 12 C -0.368 4.368 13 H 0.089 0.911 14 C -0.205 4.205 15 N -0.576 5.576 16 Si 0.733 3.267 17 H -0.206 1.206 18 H -0.220 1.220 19 H -0.219 1.219 20 C -0.180 4.180 21 C -0.234 4.234 22 C -0.194 4.194 23 C -0.098 4.098 24 N -0.121 5.121 25 H 0.095 0.905 26 H 0.110 0.890 27 H 0.108 0.892 28 H 0.203 0.797 29 H 0.245 0.755 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.220 0.780 33 H 0.065 0.935 34 H 0.109 0.891 35 H 0.105 0.895 36 H 0.099 0.901 37 H 0.097 0.903 38 H 0.123 0.877 39 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -11.812 5.212 -8.059 15.220 hybrid contribution 1.067 -0.573 0.487 1.305 sum -10.746 4.639 -7.571 13.940 Atomic orbital electron populations 1.21930 0.73846 1.04821 1.03610 1.48404 1.07072 1.04022 1.55441 1.22910 0.90201 0.93549 0.96425 1.20352 0.93583 0.93645 1.22456 1.17194 0.82420 0.86717 0.75796 1.90718 1.87180 1.14265 1.52564 1.45725 1.04789 1.11373 1.73953 1.21572 0.83998 0.93215 1.01541 1.20062 0.89239 0.89510 0.92989 0.92688 1.42468 1.58834 1.17772 1.16702 1.19203 1.23059 0.93850 1.00656 0.91081 1.24707 1.00563 0.98751 0.96503 1.69667 1.44460 1.36970 1.06474 0.86212 0.79210 0.84104 0.77207 1.20586 1.21979 1.21931 1.23032 0.93799 1.01188 0.99998 1.22959 1.05876 1.01626 0.92967 1.22779 0.97158 1.00312 0.99111 1.24240 0.95317 0.94171 0.96096 1.77201 1.02073 1.07522 1.25328 0.90458 0.88982 0.89219 0.79686 0.75457 0.91676 0.91816 0.78001 0.93546 0.89137 0.89547 0.90131 0.90267 0.87717 0.78884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.66 11.44 59.85 0.68 1.34 16 2 N -0.37 -4.39 3.98 -67.60 -0.27 -4.66 16 3 C 0.12 1.52 11.30 -16.56 -0.19 1.33 16 4 C -0.29 -4.35 6.13 -105.06 -0.64 -4.99 16 5 C 0.59 10.32 7.81 -12.52 -0.10 10.22 16 6 O -0.57 -11.25 16.90 5.28 0.09 -11.16 16 7 N -0.71 -12.05 5.38 -61.38 -0.33 -12.38 16 8 C 0.12 2.08 5.21 -4.04 -0.02 2.06 16 9 C 0.19 3.55 2.70 -67.93 -0.18 3.37 16 10 H 0.06 1.03 7.84 -51.93 -0.41 0.62 16 11 N -0.72 -16.24 4.54 -53.43 -0.24 -16.49 16 12 C -0.24 -5.96 8.63 -15.06 -0.13 -6.09 16 13 H 0.07 1.76 6.91 -52.49 -0.36 1.39 16 14 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 15 N -0.93 -26.69 13.06 55.49 0.72 -25.97 16 16 Si 0.90 21.46 29.55 -169.99 -5.02 16.43 16 17 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 18 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 19 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 20 C -0.16 -2.75 5.36 -90.62 -0.49 -3.23 16 21 C -0.20 -2.97 10.18 -26.70 -0.27 -3.24 16 22 C -0.16 -2.76 9.78 -26.70 -0.26 -3.02 16 23 C 0.09 1.33 11.50 -16.97 -0.20 1.13 16 24 N -0.30 -4.43 12.50 30.86 0.39 -4.05 16 25 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.19 1.83 8.06 -52.49 -0.42 1.41 16 29 H 0.41 6.94 7.09 -40.82 -0.29 6.65 16 30 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.39 9.64 7.80 -40.82 -0.32 9.32 16 33 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 34 H 0.09 1.54 8.11 -51.93 -0.42 1.12 16 35 H 0.09 1.26 8.05 -51.93 -0.42 0.84 16 36 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 38 H 0.10 2.07 6.23 -51.93 -0.32 1.75 16 39 H 0.19 2.62 7.50 -52.49 -0.39 2.22 16 LS Contribution 335.66 15.07 5.06 5.06 Total: -1.00 -32.01 335.66 -6.95 -38.95 By element: Atomic # 1 Polarization: 21.17 SS G_CDS: -5.45 Total: 15.72 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: -1.89 Total: -1.48 kcal Atomic # 7 Polarization: -63.81 SS G_CDS: 0.27 Total: -63.54 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: 0.09 Total: -11.16 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.01 -6.95 -38.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713103969.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.915 kcal (2) G-P(sol) polarization free energy of solvation -32.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds