Wall clock time and date at job start Fri Apr 10 2020 14:01:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.28445 * 125.19217 * 2 1 4 4 C 1.30858 * 110.93247 * 180.02562 * 3 2 1 5 5 C 1.39677 * 107.85802 * 359.77292 * 4 3 2 6 6 C 1.36597 * 125.19012 * 180.02562 * 2 1 3 7 7 C 1.47163 * 126.88462 * 359.94376 * 6 2 1 8 8 O 1.21631 * 119.99690 * 5.31037 * 7 6 2 9 9 N 1.34774 * 119.99907 * 185.31196 * 7 6 2 10 10 C 1.46499 * 120.00025 * 174.66711 * 9 7 6 11 11 H 1.09008 * 109.47385 * 34.99342 * 10 9 7 12 12 C 1.52995 * 109.47495 * 154.99520 * 10 9 7 13 13 N 1.46496 * 109.47044 * 304.99652 * 12 10 9 14 14 C 1.36941 * 119.99984 * 179.97438 * 13 12 10 15 15 H 1.07998 * 120.00193 * 0.02562 * 14 13 12 16 16 C 1.38814 * 119.99987 * 180.02562 * 14 13 12 17 17 N 1.31608 * 120.00044 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99833 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47302 * 89.99863 * 18 16 14 20 20 H 1.48501 * 109.47427 * 210.00152 * 18 16 14 21 21 H 1.48504 * 109.47136 * 329.99995 * 18 16 14 22 22 C 1.53002 * 109.46838 * 274.99676 * 10 9 7 23 23 C 1.53010 * 117.49897 * 128.74543 * 22 10 9 24 24 C 1.53002 * 117.49995 * 60.08459 * 22 10 9 25 25 H 1.09004 * 109.47010 * 274.85263 * 1 2 3 26 26 H 1.09005 * 109.47172 * 34.85282 * 1 2 3 27 27 H 1.08996 * 109.47142 * 154.85020 * 1 2 3 28 28 H 1.07996 * 126.07478 * 180.02562 * 4 3 2 29 29 H 1.07999 * 127.32226 * 180.23656 * 5 4 3 30 30 H 0.97001 * 120.00491 * 354.65691 * 9 7 6 31 31 H 1.09007 * 109.47243 * 185.00022 * 12 10 9 32 32 H 1.09005 * 109.47087 * 64.99812 * 12 10 9 33 33 H 0.97002 * 120.00365 * 0.02562 * 13 12 10 34 34 H 0.97007 * 120.00098 * 179.97438 * 17 16 14 35 35 H 1.09000 * 115.54917 * 274.41290 * 22 10 9 36 36 H 1.08995 * 117.49508 * 359.97438 * 23 22 10 37 37 H 1.08999 * 117.49752 * 145.02032 * 23 22 10 38 38 H 1.08999 * 117.49969 * 214.97778 * 24 22 10 39 39 H 1.09005 * 117.49809 * 359.97438 * 24 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2052 1.0497 0.0000 4 6 3.4735 0.7274 -0.0005 5 6 3.5612 -0.6666 0.0043 6 6 2.2522 -1.1163 -0.0005 7 6 1.7992 -2.5165 0.0000 8 8 0.6141 -2.7723 -0.0965 9 7 2.6977 -3.5153 0.1075 10 6 2.2406 -4.9022 0.2257 11 1 1.3381 -5.0394 -0.3701 12 6 3.3342 -5.8446 -0.2808 13 7 3.7099 -5.4678 -1.6457 14 6 4.6775 -6.1741 -2.3092 15 1 5.1634 -7.0091 -1.8264 16 6 5.0339 -5.8167 -3.6024 17 7 4.4422 -4.7989 -4.1905 18 14 6.3533 -6.7806 -4.5077 19 1 5.7242 -7.8986 -5.2557 20 1 7.0574 -5.8832 -5.4585 21 1 7.3273 -7.3263 -3.5285 22 6 1.9361 -5.2155 1.6920 23 6 0.5742 -5.8339 2.0142 24 6 0.8606 -4.3766 2.3851 25 1 -0.3633 0.0869 1.0240 26 1 -0.3634 0.8434 -0.5873 27 1 -0.3633 -0.9302 -0.4367 28 1 4.3048 1.4167 -0.0003 29 1 4.4594 -1.2662 0.0088 30 1 3.6470 -3.3161 0.1064 31 1 2.9619 -6.8691 -0.2762 32 1 4.2062 -5.7720 0.3693 33 1 3.2739 -4.7176 -2.0793 34 1 4.6915 -4.5489 -5.0941 35 1 2.7886 -5.5356 2.2911 36 1 -0.1050 -6.0170 1.1816 37 1 0.5306 -6.5604 2.8256 38 1 1.0053 -4.1450 3.4404 39 1 0.3702 -3.6011 1.7966 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001723278475.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:01:29 Heat of formation + Delta-G solvation = 83.418455 kcal Electronic energy + Delta-G solvation = -21853.983133 eV Core-core repulsion = 18606.848927 eV Total energy + Delta-G solvation = -3247.134206 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.41497 -39.64379 -37.19026 -35.08801 -33.76700 -33.01953 -31.47000 -30.47053 -28.00315 -27.02735 -24.19963 -23.17695 -22.20062 -21.66177 -21.39854 -20.10424 -19.92336 -17.95248 -17.08583 -16.34280 -16.18744 -15.55985 -15.12129 -14.98934 -14.57530 -14.16615 -13.76163 -13.58074 -13.40171 -13.14973 -12.93247 -12.77442 -12.33845 -12.13070 -11.74292 -11.32127 -11.10449 -10.92869 -10.83718 -10.76860 -10.23638 -10.21243 -9.98605 -9.77816 -9.70041 -9.15764 -8.95865 -8.93837 -8.71177 -6.99454 -5.80064 -3.10571 1.37603 2.45826 2.68761 3.34083 3.38657 3.41739 3.46779 3.48488 4.05418 4.52899 4.59413 4.76864 4.82803 5.09025 5.13643 5.16240 5.21162 5.31229 5.39333 5.52515 5.55331 5.69449 5.73124 5.78706 5.84686 5.85191 6.01893 6.17914 6.29875 6.40185 6.41717 6.54693 6.61574 6.76500 6.84301 7.66023 7.69260 8.10330 8.34333 8.37357 9.49170 10.04002 10.39239 11.41989 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.014149 B = 0.005574 C = 0.004323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.466724 B = 5022.526915 C = 6475.921682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.260 5.260 3 N -0.285 5.285 4 C -0.005 4.005 5 C -0.184 4.184 6 C -0.032 4.032 7 C 0.596 3.404 8 O -0.549 6.549 9 N -0.689 5.689 10 C 0.169 3.831 11 H 0.092 0.908 12 C 0.148 3.852 13 N -0.732 5.732 14 C -0.244 4.244 15 H 0.071 0.929 16 C -0.011 4.011 17 N -0.930 5.930 18 Si 0.907 3.093 19 H -0.290 1.290 20 H -0.291 1.291 21 H -0.282 1.282 22 C -0.163 4.163 23 C -0.169 4.169 24 C -0.184 4.184 25 H 0.080 0.920 26 H 0.089 0.911 27 H 0.117 0.883 28 H 0.185 0.815 29 H 0.162 0.838 30 H 0.408 0.592 31 H 0.037 0.963 32 H 0.026 0.974 33 H 0.386 0.614 34 H 0.256 0.744 35 H 0.106 0.894 36 H 0.095 0.905 37 H 0.091 0.909 38 H 0.084 0.916 39 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.718 6.842 13.000 15.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.048 5.048 3 N -0.118 5.118 4 C -0.181 4.181 5 C -0.213 4.213 6 C -0.161 4.161 7 C 0.382 3.618 8 O -0.429 6.429 9 N -0.338 5.338 10 C 0.065 3.935 11 H 0.110 0.890 12 C 0.020 3.980 13 N -0.377 5.377 14 C -0.375 4.375 15 H 0.089 0.911 16 C -0.207 4.207 17 N -0.578 5.578 18 Si 0.738 3.262 19 H -0.217 1.217 20 H -0.218 1.218 21 H -0.207 1.207 22 C -0.183 4.183 23 C -0.206 4.206 24 C -0.221 4.221 25 H 0.099 0.901 26 H 0.108 0.892 27 H 0.135 0.865 28 H 0.202 0.798 29 H 0.180 0.820 30 H 0.244 0.756 31 H 0.055 0.945 32 H 0.044 0.956 33 H 0.220 0.780 34 H 0.065 0.935 35 H 0.124 0.876 36 H 0.114 0.886 37 H 0.109 0.891 38 H 0.103 0.897 39 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -7.310 7.433 12.894 16.581 hybrid contribution 1.695 -0.812 -0.732 2.017 sum -5.615 6.621 12.162 14.943 Atomic orbital electron populations 1.22395 0.72783 1.06484 1.04204 1.45549 1.07751 1.01741 1.49722 1.73158 1.04449 1.13830 1.20364 1.23533 0.93381 0.95049 1.06089 1.22332 0.95877 0.95593 1.07498 1.21458 0.91469 0.89796 1.13338 1.16823 0.85791 0.83026 0.76166 1.90685 1.16428 1.84377 1.51409 1.45634 1.09997 1.05974 1.72186 1.20877 0.99666 0.79857 0.93093 0.89028 1.20924 0.93575 0.95360 0.88137 1.42349 1.46235 1.38208 1.10886 1.19198 1.12384 1.09902 0.96049 0.91087 1.24753 1.00181 0.98494 0.97268 1.69666 1.44896 1.28971 1.14226 0.86192 0.81318 0.79011 0.79635 1.21711 1.21779 1.20726 1.22676 0.93235 1.05494 0.96883 1.22913 0.98418 0.96014 1.03297 1.23148 1.03222 0.95213 1.00493 0.90145 0.89229 0.86472 0.79764 0.82004 0.75615 0.94486 0.95602 0.77988 0.93451 0.87635 0.88631 0.89066 0.89725 0.87199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.93 11.01 59.85 0.66 1.59 16 2 N -0.26 -3.78 3.75 -63.88 -0.24 -4.02 16 3 N -0.29 -4.17 11.90 30.59 0.36 -3.80 16 4 C 0.00 -0.06 12.03 -17.43 -0.21 -0.27 16 5 C -0.18 -2.54 10.50 -38.98 -0.41 -2.95 16 6 C -0.03 -0.49 6.96 -82.06 -0.57 -1.06 16 7 C 0.60 9.73 6.96 -12.64 -0.09 9.65 16 8 O -0.55 -9.68 11.96 5.25 0.06 -9.62 16 9 N -0.69 -10.84 4.49 -54.96 -0.25 -11.08 16 10 C 0.17 2.74 2.45 -67.93 -0.17 2.57 16 11 H 0.09 1.68 7.26 -51.92 -0.38 1.30 16 12 C 0.15 2.78 5.80 -4.05 -0.02 2.76 16 13 N -0.73 -17.67 5.43 -59.91 -0.33 -18.00 16 14 C -0.24 -6.60 9.99 -15.06 -0.15 -6.75 16 15 H 0.07 1.86 7.83 -52.49 -0.41 1.44 16 16 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 17 N -0.93 -27.71 13.06 55.49 0.72 -26.99 16 18 Si 0.91 21.99 29.55 -169.99 -5.02 16.97 16 19 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 20 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 C -0.16 -2.20 5.36 -90.61 -0.49 -2.68 16 23 C -0.17 -2.09 10.18 -26.68 -0.27 -2.36 16 24 C -0.18 -2.38 9.75 -26.69 -0.26 -2.64 16 25 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.12 1.47 5.95 -51.93 -0.31 1.16 16 28 H 0.19 1.76 8.06 -52.49 -0.42 1.34 16 29 H 0.16 1.94 7.58 -52.49 -0.40 1.54 16 30 H 0.41 6.17 7.63 -40.82 -0.31 5.86 16 31 H 0.04 0.71 8.14 -51.92 -0.42 0.28 16 32 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.39 10.03 7.33 -40.82 -0.30 9.73 16 34 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 35 H 0.11 1.32 8.11 -51.93 -0.42 0.89 16 36 H 0.10 1.24 8.05 -51.93 -0.42 0.82 16 37 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 39 H 0.11 1.64 5.26 -51.93 -0.27 1.36 16 LS Contribution 328.20 15.07 4.95 4.95 Total: -1.00 -31.88 328.20 -7.12 -39.01 By element: Atomic # 1 Polarization: 20.45 SS G_CDS: -5.31 Total: 15.14 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: -2.07 Total: -2.55 kcal Atomic # 7 Polarization: -64.17 SS G_CDS: 0.28 Total: -63.89 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: 0.06 Total: -9.62 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.88 -7.12 -39.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723278475.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.425 kcal (2) G-P(sol) polarization free energy of solvation -31.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds