Wall clock time and date at job start Fri Apr 10 2020 14:01:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.28445 * 125.19217 * 2 1 4 4 C 1.30858 * 110.93247 * 180.02562 * 3 2 1 5 5 C 1.39677 * 107.85802 * 359.77292 * 4 3 2 6 6 C 1.36597 * 125.19012 * 180.02562 * 2 1 3 7 7 C 1.47163 * 126.88462 * 359.94376 * 6 2 1 8 8 O 1.21631 * 119.99690 * 5.31037 * 7 6 2 9 9 N 1.34774 * 119.99907 * 185.31196 * 7 6 2 10 10 C 1.46499 * 120.00025 * 174.66711 * 9 7 6 11 11 H 1.09008 * 109.47385 * 34.99342 * 10 9 7 12 12 C 1.52995 * 109.47495 * 154.99520 * 10 9 7 13 13 N 1.46496 * 109.47044 * 304.99652 * 12 10 9 14 14 C 1.36941 * 119.99984 * 179.97438 * 13 12 10 15 15 H 1.07998 * 120.00193 * 0.02562 * 14 13 12 16 16 C 1.38814 * 119.99987 * 180.02562 * 14 13 12 17 17 N 1.31608 * 120.00044 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99833 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47302 * 89.99863 * 18 16 14 20 20 H 1.48501 * 109.47427 * 210.00152 * 18 16 14 21 21 H 1.48504 * 109.47136 * 329.99995 * 18 16 14 22 22 C 1.53002 * 109.46838 * 274.99676 * 10 9 7 23 23 C 1.53010 * 117.49897 * 128.74543 * 22 10 9 24 24 C 1.53002 * 117.49995 * 60.08459 * 22 10 9 25 25 H 1.09004 * 109.47010 * 274.85263 * 1 2 3 26 26 H 1.09005 * 109.47172 * 34.85282 * 1 2 3 27 27 H 1.08996 * 109.47142 * 154.85020 * 1 2 3 28 28 H 1.07996 * 126.07478 * 180.02562 * 4 3 2 29 29 H 1.07999 * 127.32226 * 180.23656 * 5 4 3 30 30 H 0.97001 * 120.00491 * 354.65691 * 9 7 6 31 31 H 1.09007 * 109.47243 * 185.00022 * 12 10 9 32 32 H 1.09005 * 109.47087 * 64.99812 * 12 10 9 33 33 H 0.97002 * 120.00365 * 0.02562 * 13 12 10 34 34 H 0.97007 * 120.00098 * 179.97438 * 17 16 14 35 35 H 1.09000 * 115.54917 * 274.41290 * 22 10 9 36 36 H 1.08995 * 117.49508 * 359.97438 * 23 22 10 37 37 H 1.08999 * 117.49752 * 145.02032 * 23 22 10 38 38 H 1.08999 * 117.49969 * 214.97778 * 24 22 10 39 39 H 1.09005 * 117.49809 * 359.97438 * 24 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2052 1.0497 0.0000 4 6 3.4735 0.7274 -0.0005 5 6 3.5612 -0.6666 0.0043 6 6 2.2522 -1.1163 -0.0005 7 6 1.7992 -2.5165 0.0000 8 8 0.6141 -2.7723 -0.0965 9 7 2.6977 -3.5153 0.1075 10 6 2.2406 -4.9022 0.2257 11 1 1.3381 -5.0394 -0.3701 12 6 3.3342 -5.8446 -0.2808 13 7 3.7099 -5.4678 -1.6457 14 6 4.6775 -6.1741 -2.3092 15 1 5.1634 -7.0091 -1.8264 16 6 5.0339 -5.8167 -3.6024 17 7 4.4422 -4.7989 -4.1905 18 14 6.3533 -6.7806 -4.5077 19 1 5.7242 -7.8986 -5.2557 20 1 7.0574 -5.8832 -5.4585 21 1 7.3273 -7.3263 -3.5285 22 6 1.9361 -5.2155 1.6920 23 6 0.5742 -5.8339 2.0142 24 6 0.8606 -4.3766 2.3851 25 1 -0.3633 0.0869 1.0240 26 1 -0.3634 0.8434 -0.5873 27 1 -0.3633 -0.9302 -0.4367 28 1 4.3048 1.4167 -0.0003 29 1 4.4594 -1.2662 0.0088 30 1 3.6470 -3.3161 0.1064 31 1 2.9619 -6.8691 -0.2762 32 1 4.2062 -5.7720 0.3693 33 1 3.2739 -4.7176 -2.0793 34 1 4.6915 -4.5489 -5.0941 35 1 2.7886 -5.5356 2.2911 36 1 -0.1050 -6.0170 1.1816 37 1 0.5306 -6.5604 2.8256 38 1 1.0053 -4.1450 3.4404 39 1 0.3702 -3.6011 1.7966 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001723278475.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:01:29 Heat of formation + Delta-G solvation = 61.882433 kcal Electronic energy + Delta-G solvation = -21854.917005 eV Core-core repulsion = 18606.848927 eV Total energy + Delta-G solvation = -3248.068078 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.49158 -40.90514 -38.41307 -36.62135 -35.21620 -34.16810 -33.13965 -31.83013 -29.55447 -28.01079 -26.00463 -24.46188 -23.27396 -23.06883 -22.53429 -21.32472 -21.08819 -19.39503 -18.76978 -17.58862 -17.29874 -16.80249 -16.55836 -16.38436 -15.85635 -15.57020 -15.13575 -14.98032 -14.65810 -14.48046 -14.43984 -13.76508 -13.69990 -13.24917 -13.17189 -12.79737 -12.70402 -12.49682 -12.30569 -12.06070 -11.86796 -11.83199 -11.35392 -11.12998 -10.98955 -10.88943 -10.30439 -10.02226 -9.94540 -9.00051 -7.92545 -5.22295 0.21820 1.40366 1.50357 1.51438 1.59846 1.63942 2.16631 2.18499 2.57607 2.99513 3.42008 3.55602 3.60221 3.62486 3.94730 4.12219 4.15557 4.18280 4.29130 4.33568 4.37044 4.45716 4.60237 4.63911 4.69340 4.82235 4.85064 4.92207 5.04418 5.11878 5.29895 5.32710 5.47338 5.53021 5.55228 5.73433 6.27479 6.43377 7.01131 7.10758 7.35322 8.08205 8.31696 9.30312 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.014149 B = 0.005574 C = 0.004323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.466724 B = 5022.526915 C = 6475.921682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.267 5.267 3 N -0.298 5.298 4 C -0.005 4.005 5 C -0.185 4.185 6 C -0.057 4.057 7 C 0.594 3.406 8 O -0.568 6.568 9 N -0.686 5.686 10 C 0.180 3.820 11 H 0.065 0.935 12 C 0.150 3.850 13 N -0.743 5.743 14 C -0.242 4.242 15 H 0.081 0.919 16 C -0.073 4.073 17 N -0.968 5.968 18 Si 0.972 3.028 19 H -0.291 1.291 20 H -0.298 1.298 21 H -0.266 1.266 22 C -0.166 4.166 23 C -0.161 4.161 24 C -0.181 4.181 25 H 0.098 0.902 26 H 0.107 0.893 27 H 0.102 0.898 28 H 0.218 0.782 29 H 0.177 0.823 30 H 0.411 0.589 31 H 0.041 0.959 32 H 0.043 0.957 33 H 0.373 0.627 34 H 0.249 0.751 35 H 0.124 0.876 36 H 0.084 0.916 37 H 0.117 0.883 38 H 0.104 0.896 39 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.825 6.532 14.561 16.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.055 5.055 3 N -0.131 5.131 4 C -0.180 4.180 5 C -0.214 4.214 6 C -0.185 4.185 7 C 0.381 3.619 8 O -0.449 6.449 9 N -0.336 5.336 10 C 0.076 3.924 11 H 0.083 0.917 12 C 0.023 3.977 13 N -0.386 5.386 14 C -0.374 4.374 15 H 0.099 0.901 16 C -0.265 4.265 17 N -0.619 5.619 18 Si 0.801 3.199 19 H -0.219 1.219 20 H -0.225 1.225 21 H -0.190 1.190 22 C -0.186 4.186 23 C -0.198 4.198 24 C -0.218 4.218 25 H 0.116 0.884 26 H 0.126 0.874 27 H 0.120 0.880 28 H 0.235 0.765 29 H 0.194 0.806 30 H 0.247 0.753 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.206 0.794 34 H 0.058 0.942 35 H 0.142 0.858 36 H 0.102 0.898 37 H 0.135 0.865 38 H 0.122 0.878 39 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -6.419 7.096 14.506 17.377 hybrid contribution 1.373 -0.712 -1.162 1.935 sum -5.045 6.383 13.343 15.628 Atomic orbital electron populations 1.22532 0.71629 1.06440 1.05577 1.45821 1.08609 1.01452 1.49587 1.73155 1.05210 1.13986 1.20794 1.24129 0.93750 0.95300 1.04804 1.22635 0.95799 0.96290 1.06646 1.21492 0.92481 0.89541 1.15013 1.16987 0.85555 0.83599 0.75772 1.90674 1.17185 1.84772 1.52292 1.45582 1.10086 1.05758 1.72128 1.20643 0.97454 0.79672 0.94644 0.91714 1.21063 0.94868 0.95983 0.85805 1.42521 1.45705 1.37627 1.12767 1.19628 1.12024 1.09563 0.96155 0.90144 1.25537 1.02765 0.99806 0.98435 1.69832 1.46870 1.30996 1.14210 0.85162 0.79009 0.77333 0.78351 1.21873 1.22534 1.19035 1.22590 0.94431 1.06528 0.95006 1.23002 0.97055 0.96206 1.03550 1.23098 1.02581 0.95017 1.01073 0.88394 0.87433 0.87972 0.76498 0.80582 0.75268 0.94161 0.93869 0.79448 0.94211 0.85827 0.89761 0.86510 0.87787 0.89352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.75 11.01 127.77 1.41 3.16 16 2 N -0.27 -7.66 3.75 -356.02 -1.33 -9.00 16 3 N -0.30 -8.39 11.90 -57.14 -0.68 -9.07 16 4 C 0.00 -0.12 12.03 85.19 1.02 0.91 16 5 C -0.18 -4.93 10.50 22.66 0.24 -4.69 16 6 C -0.06 -1.74 6.96 40.79 0.28 -1.46 16 7 C 0.59 19.68 6.96 86.59 0.60 20.28 16 8 O -0.57 -20.62 11.96 -4.13 -0.05 -20.67 16 9 N -0.69 -21.58 4.49 -446.06 -2.00 -23.58 16 10 C 0.18 5.78 2.45 44.99 0.11 5.89 16 11 H 0.06 2.43 7.26 -2.38 -0.02 2.42 16 12 C 0.15 5.47 5.80 86.38 0.50 5.97 16 13 N -0.74 -35.83 5.43 -343.45 -1.87 -37.70 16 14 C -0.24 -12.93 9.99 84.03 0.84 -12.09 16 15 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 16 C -0.07 -4.09 5.50 84.86 0.47 -3.62 16 17 N -0.97 -58.62 13.06 21.65 0.28 -58.34 16 18 Si 0.97 45.14 29.55 68.60 2.03 47.17 16 19 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 20 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 21 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 22 C -0.17 -4.19 5.36 -10.79 -0.06 -4.25 16 23 C -0.16 -3.68 10.18 30.62 0.31 -3.37 16 24 C -0.18 -4.42 9.75 30.62 0.30 -4.12 16 25 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 26 H 0.11 1.98 8.14 -2.38 -0.02 1.96 16 27 H 0.10 2.64 5.95 -2.39 -0.01 2.62 16 28 H 0.22 3.58 8.06 -2.91 -0.02 3.55 16 29 H 0.18 4.01 7.58 -2.91 -0.02 3.99 16 30 H 0.41 12.29 7.63 -92.71 -0.71 11.58 16 31 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 32 H 0.04 1.47 8.14 -2.38 -0.02 1.45 16 33 H 0.37 19.77 7.33 -92.71 -0.68 19.09 16 34 H 0.25 14.75 8.31 -92.70 -0.77 13.98 16 35 H 0.12 2.71 8.11 -2.39 -0.02 2.69 16 36 H 0.08 2.13 8.05 -2.39 -0.02 2.11 16 37 H 0.12 2.09 8.14 -2.39 -0.02 2.08 16 38 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 39 H 0.09 2.61 5.26 -2.38 -0.01 2.60 16 Total: -1.00 -68.07 328.20 2.10 -65.97 By element: Atomic # 1 Polarization: 42.90 SS G_CDS: -0.31 Total: 42.60 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: 6.03 Total: 2.62 kcal Atomic # 7 Polarization: -132.09 SS G_CDS: -5.60 Total: -137.69 kcal Atomic # 8 Polarization: -20.62 SS G_CDS: -0.05 Total: -20.67 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -68.07 2.10 -65.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723278475.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.850 kcal (2) G-P(sol) polarization free energy of solvation -68.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds