Wall clock time and date at job start Fri Apr 10 2020 13:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46507 * 119.99817 * 2 1 4 4 C 1.50699 * 109.46718 * 269.99974 * 3 2 1 5 5 H 1.08002 * 120.00090 * 359.97438 * 4 3 2 6 6 C 1.37877 * 120.00040 * 179.97438 * 4 3 2 7 7 N 1.31515 * 119.99696 * 0.02562 * 6 4 3 8 8 Si 1.86796 * 120.00395 * 179.97438 * 6 4 3 9 9 H 1.48499 * 109.47117 * 90.00227 * 8 6 4 10 10 H 1.48499 * 109.47234 * 210.00290 * 8 6 4 11 11 H 1.48501 * 109.47067 * 330.00104 * 8 6 4 12 12 C 1.34774 * 120.00163 * 179.97438 * 2 1 3 13 13 O 1.21712 * 119.99825 * 179.97438 * 12 2 1 14 14 C 1.46382 * 120.00073 * 359.97438 * 12 2 1 15 15 C 1.34854 * 120.00026 * 179.97438 * 14 12 2 16 16 C 1.47152 * 119.99892 * 179.72810 * 15 14 12 17 17 C 1.39866 * 120.15705 * 359.72348 * 16 15 14 18 18 C 1.37836 * 119.83838 * 179.71995 * 17 16 15 19 19 C 1.38550 * 120.15861 * 0.55948 * 18 17 16 20 20 Cl 1.73603 * 119.84474 * 179.74367 * 19 18 17 21 21 C 1.38546 * 120.31635 * 359.71659 * 19 18 17 22 22 C 1.37838 * 120.15740 * 359.97438 * 21 19 18 23 23 H 1.09000 * 109.47193 * 270.00075 * 1 2 3 24 24 H 1.08998 * 109.47247 * 30.00589 * 1 2 3 25 25 H 1.09000 * 109.46889 * 150.00476 * 1 2 3 26 26 H 1.08998 * 109.47104 * 29.99250 * 3 2 1 27 27 H 1.09001 * 109.47036 * 150.00070 * 3 2 1 28 28 H 0.97005 * 120.00116 * 179.97438 * 7 6 4 29 29 H 1.07997 * 119.99701 * 359.72725 * 14 12 2 30 30 H 1.08000 * 119.99489 * 359.72754 * 15 14 12 31 31 H 1.07995 * 120.08296 * 0.02562 * 17 16 15 32 32 H 1.08004 * 119.92431 * 180.27718 * 18 17 16 33 33 H 1.07999 * 119.92314 * 179.97438 * 21 19 18 34 34 H 1.08003 * 120.08156 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0980 1.0957 -2.2417 6 6 3.1258 2.8780 -1.6729 7 7 3.5531 3.6181 -0.6733 8 14 3.4378 3.4168 -3.4340 9 1 2.3076 4.2591 -3.9015 10 1 4.6977 4.2003 -3.4962 11 1 3.5560 2.2195 -4.3045 12 6 2.1389 -1.1672 0.0005 13 8 3.3560 -1.1671 0.0001 14 6 1.4070 -2.4349 0.0017 15 6 2.0813 -3.6027 0.0017 16 6 1.3456 -4.8771 0.0088 17 6 -0.0530 -4.8810 0.0215 18 6 -0.7355 -6.0785 0.0224 19 6 -0.0395 -7.2764 0.0224 20 17 -0.9073 -8.7799 0.0301 21 6 1.3460 -7.2802 0.0156 22 6 2.0417 -6.0903 0.0083 23 1 -0.3633 0.0000 1.0277 24 1 -0.3633 0.8899 -0.5139 25 1 -0.3633 -0.8900 -0.5138 26 1 1.6083 2.0285 0.5137 27 1 3.1499 1.1385 0.5138 28 1 4.0300 4.4441 -0.8505 29 1 0.3271 -2.4349 0.0065 30 1 3.1613 -3.6026 -0.0036 31 1 -0.5969 -3.9480 0.0257 32 1 -1.8156 -6.0830 0.0276 33 1 1.8822 -8.2177 0.0161 34 1 3.1217 -6.0947 0.0027 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060847686.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 13:59:53 Heat of formation + Delta-G solvation = -0.747180 kcal Electronic energy + Delta-G solvation = -18042.215476 eV Core-core repulsion = 14966.296231 eV Total energy + Delta-G solvation = -3075.919245 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.077 amu Computer time = 2.38 seconds Orbital eigenvalues (eV) -39.67925 -38.84846 -36.81989 -34.91027 -33.86237 -32.58845 -31.45021 -29.69740 -27.78719 -25.91623 -24.39070 -23.20403 -22.49267 -20.40141 -18.16822 -17.68857 -16.61880 -16.50886 -15.75414 -15.41409 -14.97971 -14.42049 -14.19689 -14.03485 -13.83690 -13.78938 -12.91729 -12.53968 -12.36650 -12.14034 -12.00498 -11.92829 -11.78453 -11.44765 -11.19262 -11.01618 -10.90672 -10.57412 -10.18127 -10.11957 -9.64200 -9.38245 -9.04707 -8.44677 -8.31474 -7.64770 -6.05309 -4.10264 0.34828 1.00972 1.82192 1.94607 3.29604 3.36291 3.40526 3.43858 3.89251 4.03015 4.42730 4.43927 4.55037 4.62605 4.95633 5.02605 5.10895 5.27014 5.32082 5.45811 5.62721 5.65574 5.86463 5.90223 5.92379 5.96047 6.18395 6.36927 6.46025 6.55184 7.06148 7.42365 7.51100 7.90916 8.21628 8.37828 8.87985 9.05169 9.54778 11.02743 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.037850 B = 0.002850 C = 0.002827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.583869 B = 9823.511830 C = 9901.336747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.595 5.595 3 C 0.244 3.756 4 C -0.527 4.527 5 H 0.057 0.943 6 C 0.060 3.940 7 N -0.895 5.895 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.530 3.470 13 O -0.543 6.543 14 C -0.177 4.177 15 C -0.059 4.059 16 C -0.050 4.050 17 C -0.098 4.098 18 C -0.109 4.109 19 C -0.036 4.036 20 Cl -0.075 7.075 21 C -0.111 4.111 22 C -0.091 4.091 23 H 0.046 0.954 24 H 0.075 0.925 25 H 0.058 0.942 26 H 0.033 0.967 27 H 0.045 0.955 28 H 0.263 0.737 29 H 0.127 0.873 30 H 0.138 0.862 31 H 0.137 0.863 32 H 0.135 0.865 33 H 0.135 0.865 34 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.205 -20.744 2.608 23.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.326 5.326 3 C 0.125 3.875 4 C -0.565 4.565 5 H 0.076 0.924 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 C 0.319 3.681 13 O -0.423 6.423 14 C -0.197 4.197 15 C -0.078 4.078 16 C -0.050 4.050 17 C -0.116 4.116 18 C -0.128 4.128 19 C -0.063 4.063 20 Cl -0.046 7.046 21 C -0.129 4.129 22 C -0.109 4.109 23 H 0.064 0.936 24 H 0.094 0.906 25 H 0.076 0.924 26 H 0.051 0.949 27 H 0.063 0.937 28 H 0.073 0.927 29 H 0.144 0.856 30 H 0.156 0.844 31 H 0.155 0.845 32 H 0.153 0.847 33 H 0.153 0.847 34 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -9.558 -20.647 2.656 22.906 hybrid contribution -0.073 0.296 -0.998 1.043 sum -9.631 -20.350 1.659 22.575 Atomic orbital electron populations 1.21695 0.81397 1.02628 1.00518 1.48083 1.06239 1.07876 1.70427 1.19329 0.92631 0.77969 0.97613 1.21428 1.36621 1.06257 0.92228 0.92433 1.24944 0.95321 0.96383 0.97502 1.69934 1.38374 1.14326 1.30755 0.86481 0.77690 0.78592 0.84579 1.20627 1.21055 1.19865 1.18136 0.87499 0.84078 0.78435 1.90785 1.13513 1.87442 1.50510 1.23402 1.00397 0.93342 1.02605 1.22264 1.00473 0.89909 0.95193 1.19231 0.93136 0.93414 0.99268 1.21423 0.93483 0.98009 0.98655 1.20983 1.00558 0.90537 1.00701 1.21079 0.92566 0.87089 1.05538 1.98371 1.76831 1.32501 1.96909 1.20988 0.91924 0.99202 1.00816 1.21368 1.00497 0.90719 0.98292 0.93592 0.90626 0.92361 0.94861 0.93701 0.92686 0.85554 0.84401 0.84485 0.84719 0.84740 0.84400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.27 10.15 59.85 0.61 1.87 16 2 N -0.60 -12.70 2.86 -184.62 -0.53 -13.23 16 3 C 0.24 6.41 5.16 -5.19 -0.03 6.39 16 4 C -0.53 -15.01 9.39 -34.44 -0.32 -15.33 16 5 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 6 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 7 N -0.89 -26.65 13.29 55.43 0.74 -25.91 16 8 Si 0.90 21.89 29.54 -169.99 -5.02 16.87 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 12 C 0.53 11.15 7.60 -12.99 -0.10 11.05 16 13 O -0.54 -13.77 15.81 5.18 0.08 -13.69 16 14 C -0.18 -2.67 8.60 -37.51 -0.32 -2.99 16 15 C -0.06 -0.80 9.46 -37.17 -0.35 -1.15 16 16 C -0.05 -0.56 5.87 -105.06 -0.62 -1.17 16 17 C -0.10 -0.95 9.41 -39.12 -0.37 -1.32 16 18 C -0.11 -0.98 9.81 -39.61 -0.39 -1.37 16 19 C -0.04 -0.34 6.33 -39.35 -0.25 -0.59 16 20 Cl -0.07 -0.65 28.95 -51.86 -1.50 -2.15 16 21 C -0.11 -0.99 9.81 -39.61 -0.39 -1.37 16 22 C -0.09 -0.87 9.79 -39.12 -0.38 -1.26 16 23 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 24 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 25 H 0.06 0.72 6.10 -51.93 -0.32 0.40 16 26 H 0.03 0.88 8.07 -51.93 -0.42 0.46 16 27 H 0.04 1.33 7.42 -51.93 -0.39 0.94 16 28 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 29 H 0.13 1.48 4.23 -52.49 -0.22 1.26 16 30 H 0.14 1.99 7.52 -52.49 -0.39 1.60 16 31 H 0.14 1.13 6.17 -52.49 -0.32 0.80 16 32 H 0.13 0.96 8.06 -52.48 -0.42 0.53 16 33 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 34 H 0.14 1.10 8.06 -52.48 -0.42 0.68 16 LS Contribution 314.60 15.07 4.74 4.74 Total: -1.00 -33.23 314.60 -8.21 -41.45 By element: Atomic # 1 Polarization: 1.24 SS G_CDS: -3.72 Total: -2.48 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: -3.01 Total: -5.60 kcal Atomic # 7 Polarization: -39.35 SS G_CDS: 0.21 Total: -39.14 kcal Atomic # 8 Polarization: -13.77 SS G_CDS: 0.08 Total: -13.69 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -1.50 Total: -2.15 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -33.23 -8.21 -41.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060847686.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.701 kcal (2) G-P(sol) polarization free energy of solvation -33.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.38 seconds