Wall clock time and date at job start Fri Apr 10 2020 13:59:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46507 * 119.99817 * 2 1 4 4 C 1.50699 * 109.46718 * 269.99974 * 3 2 1 5 5 H 1.08002 * 120.00090 * 359.97438 * 4 3 2 6 6 C 1.37877 * 120.00040 * 179.97438 * 4 3 2 7 7 N 1.31515 * 119.99696 * 0.02562 * 6 4 3 8 8 Si 1.86796 * 120.00395 * 179.97438 * 6 4 3 9 9 H 1.48499 * 109.47117 * 90.00227 * 8 6 4 10 10 H 1.48499 * 109.47234 * 210.00290 * 8 6 4 11 11 H 1.48501 * 109.47067 * 330.00104 * 8 6 4 12 12 C 1.34774 * 120.00163 * 179.97438 * 2 1 3 13 13 O 1.21712 * 119.99825 * 179.97438 * 12 2 1 14 14 C 1.46382 * 120.00073 * 359.97438 * 12 2 1 15 15 C 1.34854 * 120.00026 * 179.97438 * 14 12 2 16 16 C 1.47152 * 119.99892 * 179.72810 * 15 14 12 17 17 C 1.39866 * 120.15705 * 359.72348 * 16 15 14 18 18 C 1.37836 * 119.83838 * 179.71995 * 17 16 15 19 19 C 1.38550 * 120.15861 * 0.55948 * 18 17 16 20 20 Cl 1.73603 * 119.84474 * 179.74367 * 19 18 17 21 21 C 1.38546 * 120.31635 * 359.71659 * 19 18 17 22 22 C 1.37838 * 120.15740 * 359.97438 * 21 19 18 23 23 H 1.09000 * 109.47193 * 270.00075 * 1 2 3 24 24 H 1.08998 * 109.47247 * 30.00589 * 1 2 3 25 25 H 1.09000 * 109.46889 * 150.00476 * 1 2 3 26 26 H 1.08998 * 109.47104 * 29.99250 * 3 2 1 27 27 H 1.09001 * 109.47036 * 150.00070 * 3 2 1 28 28 H 0.97005 * 120.00116 * 179.97438 * 7 6 4 29 29 H 1.07997 * 119.99701 * 359.72725 * 14 12 2 30 30 H 1.08000 * 119.99489 * 359.72754 * 15 14 12 31 31 H 1.07995 * 120.08296 * 0.02562 * 17 16 15 32 32 H 1.08004 * 119.92431 * 180.27718 * 18 17 16 33 33 H 1.07999 * 119.92314 * 179.97438 * 21 19 18 34 34 H 1.08003 * 120.08156 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0980 1.0957 -2.2417 6 6 3.1258 2.8780 -1.6729 7 7 3.5531 3.6181 -0.6733 8 14 3.4378 3.4168 -3.4340 9 1 2.3076 4.2591 -3.9015 10 1 4.6977 4.2003 -3.4962 11 1 3.5560 2.2195 -4.3045 12 6 2.1389 -1.1672 0.0005 13 8 3.3560 -1.1671 0.0001 14 6 1.4070 -2.4349 0.0017 15 6 2.0813 -3.6027 0.0017 16 6 1.3456 -4.8771 0.0088 17 6 -0.0530 -4.8810 0.0215 18 6 -0.7355 -6.0785 0.0224 19 6 -0.0395 -7.2764 0.0224 20 17 -0.9073 -8.7799 0.0301 21 6 1.3460 -7.2802 0.0156 22 6 2.0417 -6.0903 0.0083 23 1 -0.3633 0.0000 1.0277 24 1 -0.3633 0.8899 -0.5139 25 1 -0.3633 -0.8900 -0.5138 26 1 1.6083 2.0285 0.5137 27 1 3.1499 1.1385 0.5138 28 1 4.0300 4.4441 -0.8505 29 1 0.3271 -2.4349 0.0065 30 1 3.1613 -3.6026 -0.0036 31 1 -0.5969 -3.9480 0.0257 32 1 -1.8156 -6.0830 0.0276 33 1 1.8822 -8.2177 0.0161 34 1 3.1217 -6.0947 0.0027 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060847686.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 13:59:50 Heat of formation + Delta-G solvation = -20.352001 kcal Electronic energy + Delta-G solvation = -18043.065605 eV Core-core repulsion = 14966.296231 eV Total energy + Delta-G solvation = -3076.769374 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.077 amu Computer time = 2.87 seconds Orbital eigenvalues (eV) -40.78319 -40.12434 -37.53987 -36.64275 -35.01951 -34.60310 -32.15759 -30.87928 -29.51484 -27.37714 -25.89429 -24.27846 -23.63846 -21.60571 -19.53417 -18.74558 -18.62155 -17.73721 -17.21206 -16.46903 -16.25077 -16.09018 -15.72425 -14.98271 -14.58092 -14.50019 -14.45183 -14.26851 -13.77943 -13.50593 -13.39012 -13.02646 -12.81783 -12.79431 -12.62913 -12.51776 -12.29357 -12.21202 -11.74725 -11.72446 -11.08259 -10.73344 -10.64906 -10.07385 -9.49709 -9.14441 -8.23018 -6.38486 -0.57183 0.31748 0.90283 1.12023 1.36438 1.39586 1.50157 2.27073 2.41184 2.46610 2.79975 3.06083 3.54374 3.70220 3.89794 4.07943 4.12197 4.28723 4.35419 4.46012 4.67002 4.72677 4.91923 4.92515 4.99551 5.05673 5.11601 5.20150 5.21410 5.41839 5.55376 5.58735 5.74232 5.83623 6.04666 6.68687 6.77086 7.26520 7.44820 8.83915 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.037850 B = 0.002850 C = 0.002827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.583869 B = 9823.511830 C = 9901.336747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.605 5.605 3 C 0.257 3.743 4 C -0.544 4.544 5 H 0.053 0.947 6 C 0.006 3.994 7 N -0.929 5.929 8 Si 0.970 3.030 9 H -0.262 1.262 10 H -0.280 1.280 11 H -0.273 1.273 12 C 0.521 3.479 13 O -0.605 6.605 14 C -0.196 4.196 15 C -0.028 4.028 16 C -0.074 4.074 17 C -0.092 4.092 18 C -0.113 4.113 19 C -0.037 4.037 20 Cl -0.069 7.069 21 C -0.115 4.115 22 C -0.089 4.089 23 H 0.073 0.927 24 H 0.067 0.933 25 H 0.097 0.903 26 H 0.026 0.974 27 H -0.002 1.002 28 H 0.268 0.732 29 H 0.166 0.834 30 H 0.121 0.879 31 H 0.155 0.845 32 H 0.156 0.844 33 H 0.153 0.847 34 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.304 -22.601 1.626 25.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.335 5.335 3 C 0.135 3.865 4 C -0.582 4.582 5 H 0.071 0.929 6 C -0.193 4.193 7 N -0.568 5.568 8 Si 0.794 3.206 9 H -0.187 1.187 10 H -0.206 1.206 11 H -0.198 1.198 12 C 0.312 3.688 13 O -0.490 6.490 14 C -0.216 4.216 15 C -0.048 4.048 16 C -0.074 4.074 17 C -0.110 4.110 18 C -0.131 4.131 19 C -0.064 4.064 20 Cl -0.040 7.040 21 C -0.133 4.133 22 C -0.107 4.107 23 H 0.091 0.909 24 H 0.086 0.914 25 H 0.115 0.885 26 H 0.044 0.956 27 H 0.016 0.984 28 H 0.077 0.923 29 H 0.183 0.817 30 H 0.139 0.861 31 H 0.173 0.827 32 H 0.173 0.827 33 H 0.171 0.829 34 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -11.719 -22.520 1.682 25.442 hybrid contribution 0.564 0.680 -0.631 1.086 sum -11.154 -21.840 1.051 24.546 Atomic orbital electron populations 1.22018 0.77639 1.04192 1.02804 1.48095 1.08608 1.06337 1.70415 1.18797 0.91169 0.80329 0.96174 1.21693 1.37022 1.06562 0.92940 0.92893 1.25889 0.94826 0.96390 1.02150 1.70055 1.38899 1.14799 1.33098 0.85382 0.78145 0.78200 0.78881 1.18654 1.20566 1.19795 1.19082 0.87161 0.85712 0.76814 1.90738 1.16347 1.88426 1.53460 1.23111 1.01686 0.90295 1.06528 1.22341 0.99930 0.90931 0.91633 1.19136 0.93884 0.92367 1.02048 1.21636 0.92825 0.99156 0.97346 1.21229 1.01680 0.90024 1.00164 1.21320 0.92930 0.87613 1.04524 1.98380 1.76667 1.32129 1.96789 1.21198 0.92040 0.99660 1.00434 1.21563 1.01290 0.90571 0.97308 0.90881 0.91372 0.88486 0.95558 0.98421 0.92336 0.81663 0.86134 0.82709 0.82658 0.82948 0.83311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.21 10.15 127.77 1.30 3.50 16 2 N -0.60 -26.29 2.86 -856.23 -2.45 -28.73 16 3 C 0.26 14.17 5.16 85.63 0.44 14.62 16 4 C -0.54 -31.89 9.39 25.60 0.24 -31.65 16 5 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 6 C 0.01 0.37 5.46 84.65 0.46 0.83 16 7 N -0.93 -56.77 13.29 21.45 0.28 -56.49 16 8 Si 0.97 45.26 29.54 68.60 2.03 47.29 16 9 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 10 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 11 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 12 C 0.52 22.46 7.60 86.36 0.66 23.11 16 13 O -0.61 -32.53 15.81 -4.39 -0.07 -32.60 16 14 C -0.20 -5.70 8.60 23.61 0.20 -5.49 16 15 C -0.03 -0.75 9.46 23.83 0.23 -0.52 16 16 C -0.07 -1.48 5.87 -20.15 -0.12 -1.60 16 17 C -0.09 -1.48 9.41 22.57 0.21 -1.27 16 18 C -0.11 -1.63 9.81 22.25 0.22 -1.41 16 19 C -0.04 -0.58 6.33 22.42 0.14 -0.44 16 20 Cl -0.07 -1.00 28.95 -2.72 -0.08 -1.08 16 21 C -0.11 -1.74 9.81 22.25 0.22 -1.52 16 22 C -0.09 -1.53 9.79 22.57 0.22 -1.31 16 23 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 24 H 0.07 2.10 8.07 -2.39 -0.02 2.08 16 25 H 0.10 2.08 6.10 -2.39 -0.01 2.06 16 26 H 0.03 1.46 8.07 -2.39 -0.02 1.44 16 27 H 0.00 -0.15 7.42 -2.39 -0.02 -0.17 16 28 H 0.27 15.28 8.31 -92.70 -0.77 14.51 16 29 H 0.17 3.33 4.23 -2.91 -0.01 3.32 16 30 H 0.12 3.58 7.52 -2.91 -0.02 3.56 16 31 H 0.16 1.88 6.17 -2.91 -0.02 1.86 16 32 H 0.16 1.59 8.06 -2.91 -0.02 1.56 16 33 H 0.15 1.71 8.06 -2.91 -0.02 1.68 16 34 H 0.15 2.14 8.06 -2.91 -0.02 2.11 16 Total: -1.00 -75.87 314.60 5.25 -70.62 By element: Atomic # 1 Polarization: 3.03 SS G_CDS: 1.11 Total: 4.15 kcal Atomic # 6 Polarization: -7.57 SS G_CDS: 4.42 Total: -3.15 kcal Atomic # 7 Polarization: -83.06 SS G_CDS: -2.16 Total: -85.22 kcal Atomic # 8 Polarization: -32.53 SS G_CDS: -0.07 Total: -32.60 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Atomic # 17 Polarization: -1.00 SS G_CDS: -0.08 Total: -1.08 kcal Total: -75.87 5.25 -70.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060847686.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.267 kcal (2) G-P(sol) polarization free energy of solvation -75.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.87 seconds