Wall clock time and date at job start Fri Apr 10 2020 14:01:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.37096 * 120.00343 * 2 1 4 4 H 1.08005 * 120.00265 * 142.72297 * 3 2 1 5 5 C 1.38956 * 119.99703 * 322.71873 * 3 2 1 6 6 N 1.31407 * 119.99657 * 158.50838 * 5 3 2 7 7 Si 1.86800 * 119.99905 * 338.50652 * 5 3 2 8 8 H 1.48497 * 109.46775 * 95.74158 * 7 5 3 9 9 H 1.48498 * 109.46826 * 215.73669 * 7 5 3 10 10 H 1.48498 * 109.47067 * 335.73985 * 7 5 3 11 11 C 1.34777 * 119.99925 * 179.97438 * 2 1 3 12 12 O 1.21287 * 120.00587 * 180.02562 * 11 2 1 13 13 C 1.50700 * 119.99885 * 0.02562 * 11 2 1 14 14 H 1.08999 * 115.55054 * 34.32845 * 13 11 2 15 15 C 1.53007 * 117.51886 * 248.63077 * 13 11 2 16 16 C 1.52994 * 117.50194 * 180.02562 * 13 11 2 17 17 H 1.08997 * 117.50561 * 215.02787 * 16 13 11 18 18 C 1.50701 * 117.49875 * 0.02562 * 16 13 11 19 19 C 1.38241 * 120.00741 * 59.99711 * 18 16 13 20 20 C 1.38217 * 120.01145 * 180.02562 * 19 18 16 21 21 C 1.38260 * 120.03253 * 359.95272 * 20 19 18 22 22 C 1.38200 * 120.01021 * 0.03218 * 21 20 19 23 23 C 1.38332 * 120.00780 * 239.95869 * 18 16 13 24 24 Cl 1.73600 * 120.01324 * 0.04043 * 23 18 16 25 25 H 1.08999 * 109.46929 * 265.05763 * 1 2 3 26 26 H 1.09004 * 109.46320 * 25.05362 * 1 2 3 27 27 H 1.08994 * 109.47080 * 145.05467 * 1 2 3 28 28 H 0.97000 * 120.00074 * 180.02562 * 6 5 3 29 29 H 1.09000 * 117.49778 * 145.02966 * 15 13 11 30 30 H 1.08998 * 117.49574 * 0.02562 * 15 13 11 31 31 H 1.07999 * 119.98899 * 359.97438 * 19 18 16 32 32 H 1.08004 * 119.98119 * 179.97438 * 20 19 18 33 33 H 1.07997 * 119.99595 * 180.02562 * 21 20 19 34 34 H 1.07993 * 120.00659 * 179.72259 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1506 1.1872 0.0000 4 1 3.0651 1.2828 0.5665 5 6 1.6687 2.2677 -0.7290 6 7 2.0456 3.4883 -0.4212 7 14 0.4854 1.9848 -2.1464 8 1 -0.9098 2.1592 -1.6686 9 1 0.7646 2.9642 -3.2271 10 1 0.6607 0.6064 -2.6700 11 6 2.1389 -1.1672 0.0005 12 8 3.3518 -1.1674 0.0010 13 6 1.3853 -2.4723 0.0005 14 1 0.4472 -2.4735 -0.5544 15 6 1.4595 -3.3315 1.2644 16 6 2.2073 -3.7627 0.0017 17 1 1.8105 -4.6128 -0.5531 18 6 3.7086 -3.6314 0.0034 19 6 4.3440 -2.9746 1.0407 20 6 5.7208 -2.8537 1.0421 21 6 6.4636 -3.3903 0.0068 22 6 5.8296 -4.0473 -1.0306 23 6 4.4512 -4.1688 -1.0326 24 17 3.6540 -4.9936 -2.3356 25 1 -0.3633 -0.0885 1.0238 26 1 -0.3632 0.9310 -0.4352 27 1 -0.3633 -0.8423 -0.5886 28 1 1.7090 4.2426 -0.9297 29 1 0.5702 -3.8979 1.5409 30 1 2.0532 -2.9526 2.0963 31 1 3.7643 -2.5552 1.8497 32 1 6.2167 -2.3401 1.8526 33 1 7.5395 -3.2958 0.0087 34 1 6.4095 -4.4625 -1.8416 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069893934.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:01:10 Heat of formation + Delta-G solvation = 36.816672 kcal Electronic energy + Delta-G solvation = -19672.823057 eV Core-core repulsion = 16598.532703 eV Total energy + Delta-G solvation = -3074.290354 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.077 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.96859 -38.28371 -36.20070 -36.00857 -34.57444 -32.04608 -30.30106 -30.26475 -26.60053 -25.64471 -23.74891 -22.75626 -22.09824 -20.30245 -18.48937 -17.22690 -16.99618 -16.27744 -15.58155 -15.10637 -14.86185 -14.35634 -13.92107 -13.66171 -13.44719 -13.18508 -12.88695 -12.63279 -12.34204 -12.18553 -11.83312 -11.62573 -11.35622 -11.13003 -10.92557 -10.80036 -10.46093 -10.40295 -10.31021 -10.14276 -9.89978 -9.11180 -8.77635 -8.24748 -7.79709 -7.63001 -6.41008 -3.97226 1.58239 1.74931 2.47022 3.01300 3.20249 3.26701 3.43156 4.05849 4.13675 4.30507 4.39687 4.85888 4.94822 5.08394 5.22849 5.26085 5.32381 5.42056 5.59460 5.71810 5.73315 5.84323 5.91986 6.06866 6.12017 6.18147 6.22739 6.30760 6.34003 6.60666 6.80320 6.93057 7.24399 7.53904 8.26947 8.51050 8.96154 9.30941 9.78727 10.71103 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.020521 B = 0.006020 C = 0.005734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.133586 B = 4650.405601 C = 4881.787754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.465 5.465 3 C -0.314 4.314 4 H 0.105 0.895 5 C 0.059 3.941 6 N -0.864 5.864 7 Si 0.879 3.121 8 H -0.276 1.276 9 H -0.288 1.288 10 H -0.264 1.264 11 C 0.485 3.515 12 O -0.546 6.546 13 C -0.166 4.166 14 H 0.117 0.883 15 C -0.153 4.153 16 C -0.096 4.096 17 H 0.118 0.882 18 C -0.025 4.025 19 C -0.028 4.028 20 C -0.124 4.124 21 C -0.111 4.111 22 C -0.128 4.128 23 C -0.027 4.027 24 Cl -0.088 7.088 25 H 0.052 0.948 26 H 0.064 0.936 27 H 0.054 0.946 28 H 0.274 0.726 29 H 0.102 0.898 30 H 0.101 0.899 31 H 0.122 0.878 32 H 0.120 0.880 33 H 0.122 0.878 34 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.348 -15.181 1.370 15.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.186 5.186 3 C -0.441 4.441 4 H 0.123 0.877 5 C -0.147 4.147 6 N -0.501 5.501 7 Si 0.707 3.293 8 H -0.203 1.203 9 H -0.215 1.215 10 H -0.189 1.189 11 C 0.274 3.726 12 O -0.427 6.427 13 C -0.187 4.187 14 H 0.135 0.865 15 C -0.190 4.190 16 C -0.114 4.114 17 H 0.136 0.864 18 C -0.026 4.026 19 C -0.046 4.046 20 C -0.142 4.142 21 C -0.130 4.130 22 C -0.146 4.146 23 C -0.054 4.054 24 Cl -0.059 7.059 25 H 0.070 0.930 26 H 0.082 0.918 27 H 0.072 0.928 28 H 0.084 0.916 29 H 0.121 0.879 30 H 0.120 0.880 31 H 0.140 0.860 32 H 0.138 0.862 33 H 0.140 0.860 34 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 0.183 -14.995 1.213 15.045 hybrid contribution -0.969 0.252 -1.125 1.506 sum -0.786 -14.743 0.087 14.764 Atomic orbital electron populations 1.21993 0.83564 1.01362 1.00967 1.43651 1.03978 1.05579 1.65401 1.19031 1.10164 0.85396 1.29518 0.87706 1.25362 0.97460 0.94800 0.97057 1.69748 1.43897 0.98096 1.38333 0.86932 0.80170 0.79076 0.83134 1.20328 1.21468 1.18878 1.19339 0.87653 0.83614 0.82030 1.90598 1.13183 1.85893 1.53046 1.22480 1.01256 0.91772 1.03179 0.86489 1.23067 1.02347 1.02062 0.91561 1.21003 0.90332 0.97903 1.02171 0.86408 1.18630 0.92921 0.97435 0.93598 1.20685 0.93974 0.92946 0.97002 1.21021 0.94068 1.00019 0.99086 1.20906 0.99504 0.98419 0.94147 1.20757 0.92108 1.02061 0.99708 1.20542 0.92585 1.01581 0.90646 1.98313 1.80815 1.77621 1.49162 0.92991 0.91796 0.92755 0.91606 0.87942 0.88040 0.86022 0.86213 0.86045 0.85896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.27 8.80 59.85 0.53 1.80 16 2 N -0.46 -11.17 2.58 -122.19 -0.32 -11.48 16 3 C -0.31 -8.86 9.37 -14.93 -0.14 -9.00 16 4 H 0.11 3.31 7.91 -52.48 -0.41 2.89 16 5 C 0.06 1.63 5.29 -17.47 -0.09 1.54 16 6 N -0.86 -25.08 13.96 55.50 0.77 -24.31 16 7 Si 0.88 20.81 24.96 -169.99 -4.24 16.57 16 8 H -0.28 -6.04 6.70 56.52 0.38 -5.66 16 9 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 10 H -0.26 -6.28 7.11 56.52 0.40 -5.87 16 11 C 0.49 10.95 7.27 -10.99 -0.08 10.87 16 12 O -0.55 -13.73 11.57 5.55 0.06 -13.66 16 13 C -0.17 -2.83 5.30 -91.77 -0.49 -3.31 16 14 H 0.12 1.77 6.51 -51.93 -0.34 1.43 16 15 C -0.15 -2.10 9.57 -26.75 -0.26 -2.35 16 16 C -0.10 -1.48 5.55 -91.80 -0.51 -1.99 16 17 H 0.12 1.63 7.16 -51.93 -0.37 1.25 16 18 C -0.02 -0.43 4.37 -104.59 -0.46 -0.89 16 19 C -0.03 -0.48 6.17 -39.59 -0.24 -0.73 16 20 C -0.12 -1.98 10.05 -39.58 -0.40 -2.38 16 21 C -0.11 -1.65 10.05 -39.59 -0.40 -2.05 16 22 C -0.13 -1.96 9.83 -39.54 -0.39 -2.34 16 23 C -0.03 -0.45 6.31 -39.50 -0.25 -0.70 16 24 Cl -0.09 -1.31 27.42 -51.86 -1.42 -2.73 16 25 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 26 H 0.06 1.33 3.43 -51.93 -0.18 1.16 16 27 H 0.05 0.89 6.22 -51.93 -0.32 0.57 16 28 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 29 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16 30 H 0.10 1.43 6.18 -51.93 -0.32 1.11 16 31 H 0.12 2.10 5.78 -52.49 -0.30 1.80 16 32 H 0.12 1.68 8.06 -52.48 -0.42 1.26 16 33 H 0.12 1.45 8.06 -52.49 -0.42 1.02 16 34 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 291.29 15.07 4.39 4.39 Total: -1.00 -31.50 291.29 -7.45 -38.94 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -3.52 Total: 3.83 kcal Atomic # 6 Polarization: -8.36 SS G_CDS: -3.17 Total: -11.54 kcal Atomic # 7 Polarization: -36.25 SS G_CDS: 0.46 Total: -35.79 kcal Atomic # 8 Polarization: -13.73 SS G_CDS: 0.06 Total: -13.66 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -4.24 Total: 16.57 kcal Atomic # 17 Polarization: -1.31 SS G_CDS: -1.42 Total: -2.73 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -31.50 -7.45 -38.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069893934.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.759 kcal (2) G-P(sol) polarization free energy of solvation -31.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds