Wall clock time and date at job start Fri Apr 10 2020 14:01:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.37096 * 120.00343 * 2 1 4 4 H 1.08005 * 120.00265 * 142.72297 * 3 2 1 5 5 C 1.38956 * 119.99703 * 322.71873 * 3 2 1 6 6 N 1.31407 * 119.99657 * 158.50838 * 5 3 2 7 7 Si 1.86800 * 119.99905 * 338.50652 * 5 3 2 8 8 H 1.48497 * 109.46775 * 95.74158 * 7 5 3 9 9 H 1.48498 * 109.46826 * 215.73669 * 7 5 3 10 10 H 1.48498 * 109.47067 * 335.73985 * 7 5 3 11 11 C 1.34777 * 119.99925 * 179.97438 * 2 1 3 12 12 O 1.21287 * 120.00587 * 180.02562 * 11 2 1 13 13 C 1.50700 * 119.99885 * 0.02562 * 11 2 1 14 14 H 1.08999 * 115.55054 * 34.32845 * 13 11 2 15 15 C 1.53007 * 117.51886 * 248.63077 * 13 11 2 16 16 C 1.52994 * 117.50194 * 180.02562 * 13 11 2 17 17 H 1.08997 * 117.50561 * 215.02787 * 16 13 11 18 18 C 1.50701 * 117.49875 * 0.02562 * 16 13 11 19 19 C 1.38241 * 120.00741 * 59.99711 * 18 16 13 20 20 C 1.38217 * 120.01145 * 180.02562 * 19 18 16 21 21 C 1.38260 * 120.03253 * 359.95272 * 20 19 18 22 22 C 1.38200 * 120.01021 * 0.03218 * 21 20 19 23 23 C 1.38332 * 120.00780 * 239.95869 * 18 16 13 24 24 Cl 1.73600 * 120.01324 * 0.04043 * 23 18 16 25 25 H 1.08999 * 109.46929 * 265.05763 * 1 2 3 26 26 H 1.09004 * 109.46320 * 25.05362 * 1 2 3 27 27 H 1.08994 * 109.47080 * 145.05467 * 1 2 3 28 28 H 0.97000 * 120.00074 * 180.02562 * 6 5 3 29 29 H 1.09000 * 117.49778 * 145.02966 * 15 13 11 30 30 H 1.08998 * 117.49574 * 0.02562 * 15 13 11 31 31 H 1.07999 * 119.98899 * 359.97438 * 19 18 16 32 32 H 1.08004 * 119.98119 * 179.97438 * 20 19 18 33 33 H 1.07997 * 119.99595 * 180.02562 * 21 20 19 34 34 H 1.07993 * 120.00659 * 179.72259 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1506 1.1872 0.0000 4 1 3.0651 1.2828 0.5665 5 6 1.6687 2.2677 -0.7290 6 7 2.0456 3.4883 -0.4212 7 14 0.4854 1.9848 -2.1464 8 1 -0.9098 2.1592 -1.6686 9 1 0.7646 2.9642 -3.2271 10 1 0.6607 0.6064 -2.6700 11 6 2.1389 -1.1672 0.0005 12 8 3.3518 -1.1674 0.0010 13 6 1.3853 -2.4723 0.0005 14 1 0.4472 -2.4735 -0.5544 15 6 1.4595 -3.3315 1.2644 16 6 2.2073 -3.7627 0.0017 17 1 1.8105 -4.6128 -0.5531 18 6 3.7086 -3.6314 0.0034 19 6 4.3440 -2.9746 1.0407 20 6 5.7208 -2.8537 1.0421 21 6 6.4636 -3.3903 0.0068 22 6 5.8296 -4.0473 -1.0306 23 6 4.4512 -4.1688 -1.0326 24 17 3.6540 -4.9936 -2.3356 25 1 -0.3633 -0.0885 1.0238 26 1 -0.3632 0.9310 -0.4352 27 1 -0.3633 -0.8423 -0.5886 28 1 1.7090 4.2426 -0.9297 29 1 0.5702 -3.8979 1.5409 30 1 2.0532 -2.9526 2.0963 31 1 3.7643 -2.5552 1.8497 32 1 6.2167 -2.3401 1.8526 33 1 7.5395 -3.2958 0.0087 34 1 6.4095 -4.4625 -1.8416 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069893934.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:01:09 Heat of formation + Delta-G solvation = 18.127172 kcal Electronic energy + Delta-G solvation = -19673.633495 eV Core-core repulsion = 16598.532703 eV Total energy + Delta-G solvation = -3075.100791 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.077 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -41.37553 -39.74980 -37.55325 -37.25401 -36.35313 -34.09342 -31.53695 -31.49183 -28.36591 -27.35799 -24.96814 -24.31702 -23.35150 -21.53835 -20.08111 -19.06557 -18.51292 -17.80449 -17.23717 -16.43568 -16.22021 -15.89494 -15.47457 -15.04876 -14.70525 -14.56894 -14.46771 -14.38336 -14.05431 -13.74651 -13.27100 -12.91708 -12.71624 -12.54686 -12.36310 -12.29228 -12.07697 -11.85310 -11.59302 -11.58901 -11.32218 -11.02699 -10.39427 -9.69748 -9.42331 -9.10483 -8.51656 -6.12060 0.34420 0.50698 1.17418 1.25028 1.31214 1.42875 1.87694 2.16658 2.69597 2.73494 2.95730 3.16302 3.61715 3.85096 3.93027 4.03295 4.11698 4.17300 4.29021 4.42204 4.52124 4.55801 4.65916 4.81105 4.84486 4.91594 4.95950 5.07922 5.16900 5.39211 5.54684 5.57365 5.69220 6.03537 6.04523 6.59457 6.97457 7.34261 7.95047 8.65910 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.020521 B = 0.006020 C = 0.005734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.133586 B = 4650.405601 C = 4881.787754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.484 5.484 3 C -0.327 4.327 4 H 0.045 0.955 5 C 0.009 3.991 6 N -0.914 5.914 7 Si 0.951 3.049 8 H -0.240 1.240 9 H -0.293 1.293 10 H -0.262 1.262 11 C 0.479 3.521 12 O -0.582 6.582 13 C -0.180 4.180 14 H 0.146 0.854 15 C -0.125 4.125 16 C -0.097 4.097 17 H 0.139 0.861 18 C -0.044 4.044 19 C -0.049 4.049 20 C -0.141 4.141 21 C -0.114 4.114 22 C -0.134 4.134 23 C -0.044 4.044 24 Cl -0.074 7.074 25 H 0.074 0.926 26 H 0.051 0.949 27 H 0.093 0.907 28 H 0.279 0.721 29 H 0.147 0.853 30 H 0.090 0.910 31 H 0.112 0.888 32 H 0.130 0.870 33 H 0.151 0.849 34 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.478 -17.531 0.331 17.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.206 5.206 3 C -0.455 4.455 4 H 0.063 0.937 5 C -0.193 4.193 6 N -0.552 5.552 7 Si 0.775 3.225 8 H -0.165 1.165 9 H -0.220 1.220 10 H -0.186 1.186 11 C 0.270 3.730 12 O -0.465 6.465 13 C -0.201 4.201 14 H 0.164 0.836 15 C -0.162 4.162 16 C -0.116 4.116 17 H 0.157 0.843 18 C -0.045 4.045 19 C -0.067 4.067 20 C -0.159 4.159 21 C -0.132 4.132 22 C -0.152 4.152 23 C -0.070 4.070 24 Cl -0.046 7.046 25 H 0.092 0.908 26 H 0.070 0.930 27 H 0.111 0.889 28 H 0.088 0.912 29 H 0.165 0.835 30 H 0.109 0.891 31 H 0.130 0.870 32 H 0.148 0.852 33 H 0.169 0.831 34 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -1.973 -17.369 0.196 17.481 hybrid contribution -0.146 0.924 -0.719 1.180 sum -2.119 -16.445 -0.523 16.589 Atomic orbital electron populations 1.22195 0.80578 1.02286 1.03157 1.43790 1.05844 1.04547 1.66464 1.18628 1.09255 0.87952 1.29700 0.93693 1.26139 0.99882 0.93995 0.99241 1.69867 1.46303 0.99199 1.39810 0.85800 0.79479 0.78593 0.78604 1.16470 1.22036 1.18586 1.20334 0.87716 0.85126 0.79862 1.90587 1.15234 1.86913 1.53761 1.22384 1.02010 0.88959 1.06716 0.83623 1.23239 1.03142 0.99808 0.89970 1.21168 0.89334 0.97396 1.03679 0.84287 1.18904 0.94255 0.97637 0.93692 1.20769 0.94665 0.93844 0.97417 1.21325 0.94113 1.00342 1.00093 1.21269 1.01014 0.97495 0.93400 1.21129 0.92119 1.01674 1.00316 1.20788 0.93295 1.01918 0.91037 1.98306 1.80635 1.77255 1.48365 0.90785 0.93025 0.88875 0.91184 0.83503 0.89124 0.87039 0.85203 0.83150 0.83696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.18 8.80 127.77 1.12 3.30 16 2 N -0.48 -23.17 2.58 -658.89 -1.70 -24.87 16 3 C -0.33 -19.24 9.37 84.04 0.79 -18.45 16 4 H 0.05 3.09 7.91 -2.91 -0.02 3.07 16 5 C 0.01 0.51 5.29 84.93 0.45 0.96 16 6 N -0.91 -54.98 13.96 21.66 0.30 -54.68 16 7 Si 0.95 42.61 24.96 68.60 1.71 44.32 16 8 H -0.24 -9.31 6.70 99.48 0.67 -8.65 16 9 H -0.29 -13.24 7.11 99.48 0.71 -12.54 16 10 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 11 C 0.48 21.51 7.27 87.66 0.64 22.14 16 12 O -0.58 -30.14 11.57 -3.05 -0.04 -30.18 16 13 C -0.18 -5.62 5.30 -11.54 -0.06 -5.68 16 14 H 0.15 3.69 6.51 -2.39 -0.02 3.67 16 15 C -0.12 -3.01 9.57 30.58 0.29 -2.72 16 16 C -0.10 -2.77 5.55 -11.56 -0.06 -2.84 16 17 H 0.14 3.32 7.16 -2.39 -0.02 3.31 16 18 C -0.04 -1.49 4.37 -19.84 -0.09 -1.57 16 19 C -0.05 -1.72 6.17 22.27 0.14 -1.58 16 20 C -0.14 -4.58 10.05 22.27 0.22 -4.36 16 21 C -0.11 -3.29 10.05 22.27 0.22 -3.07 16 22 C -0.13 -3.94 9.83 22.29 0.22 -3.72 16 23 C -0.04 -1.41 6.31 22.32 0.14 -1.27 16 24 Cl -0.07 -2.06 27.42 -2.72 -0.07 -2.14 16 25 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 26 H 0.05 2.00 3.43 -2.39 -0.01 1.99 16 27 H 0.09 2.63 6.22 -2.39 -0.01 2.61 16 28 H 0.28 15.39 8.31 -92.71 -0.77 14.62 16 29 H 0.15 2.29 8.14 -2.39 -0.02 2.27 16 30 H 0.09 2.43 6.18 -2.39 -0.01 2.41 16 31 H 0.11 4.02 5.78 -2.91 -0.02 4.00 16 32 H 0.13 3.77 8.06 -2.91 -0.02 3.74 16 33 H 0.15 3.33 8.06 -2.91 -0.02 3.31 16 34 H 0.15 3.50 8.06 -2.91 -0.02 3.47 16 Total: -1.00 -72.89 291.29 5.32 -67.57 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: 1.09 Total: 18.81 kcal Atomic # 6 Polarization: -22.87 SS G_CDS: 4.02 Total: -18.84 kcal Atomic # 7 Polarization: -78.14 SS G_CDS: -1.40 Total: -79.54 kcal Atomic # 8 Polarization: -30.14 SS G_CDS: -0.04 Total: -30.18 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 1.71 Total: 44.32 kcal Atomic # 17 Polarization: -2.06 SS G_CDS: -0.07 Total: -2.14 kcal Total: -72.89 5.32 -67.57 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069893934.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.701 kcal (2) G-P(sol) polarization free energy of solvation -72.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds