Wall clock time and date at job start Fri Apr 10 2020 14:01:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.37102 * 119.99712 * 2 1 4 4 H 1.07998 * 119.99807 * 204.46159 * 3 2 1 5 5 C 1.38949 * 120.00310 * 24.46284 * 3 2 1 6 6 N 1.31413 * 119.99659 * 12.52526 * 5 3 2 7 7 Si 1.86794 * 120.00158 * 192.52598 * 5 3 2 8 8 H 1.48500 * 109.47388 * 59.99753 * 7 5 3 9 9 H 1.48501 * 109.47199 * 180.02562 * 7 5 3 10 10 H 1.48508 * 109.46989 * 299.99889 * 7 5 3 11 11 C 1.34776 * 120.00118 * 179.97438 * 2 1 3 12 12 O 1.21293 * 120.00036 * 180.02562 * 11 2 1 13 13 C 1.50699 * 119.99764 * 359.72670 * 11 2 1 14 14 H 1.09006 * 115.55043 * 325.58075 * 13 11 2 15 15 C 1.52993 * 117.49962 * 111.25656 * 13 11 2 16 16 C 1.52998 * 117.49761 * 179.91439 * 13 11 2 17 17 H 1.09005 * 117.50023 * 359.97438 * 16 13 11 18 18 C 1.50704 * 117.50119 * 144.99690 * 16 13 11 19 19 C 1.38229 * 120.00909 * 59.99648 * 18 16 13 20 20 C 1.38219 * 120.01733 * 179.97438 * 19 18 16 21 21 C 1.38260 * 120.02575 * 0.04721 * 20 19 18 22 22 C 1.38199 * 120.01120 * 359.97438 * 21 20 19 23 23 C 1.38334 * 120.00302 * 239.73228 * 18 16 13 24 24 Cl 1.73594 * 120.01549 * 359.96558 * 23 18 16 25 25 H 1.08997 * 109.47179 * 265.78061 * 1 2 3 26 26 H 1.09001 * 109.46945 * 25.78414 * 1 2 3 27 27 H 1.09001 * 109.46789 * 145.78029 * 1 2 3 28 28 H 0.97000 * 119.99484 * 179.97438 * 6 5 3 29 29 H 1.09004 * 117.49715 * 214.97983 * 15 13 11 30 30 H 1.08997 * 117.49813 * 359.97438 * 15 13 11 31 31 H 1.08006 * 119.98833 * 0.02562 * 19 18 16 32 32 H 1.08002 * 119.98701 * 180.02562 * 20 19 18 33 33 H 1.08000 * 119.99587 * 179.97438 * 21 20 19 34 34 H 1.07997 * 120.00538 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1505 1.1874 0.0000 4 1 3.1578 1.2294 -0.3873 5 6 1.5493 2.3367 0.4983 6 7 0.4346 2.2486 1.1886 7 14 2.3256 4.0069 0.1869 8 1 2.4071 4.2500 -1.2758 9 1 1.4962 5.0639 0.8194 10 1 3.6911 4.0346 0.7701 11 6 2.1390 -1.1672 0.0005 12 8 3.3519 -1.1672 0.0010 13 6 1.3854 -2.4722 0.0073 14 1 0.4501 -2.4722 0.5671 15 6 1.4531 -3.3336 -1.2553 16 6 2.2075 -3.7626 0.0056 17 1 3.2934 -3.6676 -0.0010 18 6 1.6621 -4.9363 0.7778 19 6 0.4305 -5.4694 0.4468 20 6 -0.0696 -6.5462 1.1545 21 6 0.6612 -7.0900 2.1946 22 6 1.8925 -6.5575 2.5268 23 6 2.3965 -5.4836 1.8145 24 17 3.9467 -4.8195 2.2257 25 1 -0.3633 -0.0756 1.0248 26 1 -0.3633 0.9254 -0.4470 27 1 -0.3633 -0.8498 -0.5779 28 1 0.0151 3.0509 1.5368 29 1 0.5623 -3.9005 -1.5261 30 1 2.0422 -2.9562 -2.0910 31 1 -0.1407 -5.0451 -0.3657 32 1 -1.0317 -6.9627 0.8952 33 1 0.2698 -7.9311 2.7476 34 1 2.4634 -6.9827 3.3390 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069893936.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:01:14 Heat of formation + Delta-G solvation = -1.931341 kcal Electronic energy + Delta-G solvation = -18939.513897 eV Core-core repulsion = 15863.543303 eV Total energy + Delta-G solvation = -3075.970594 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.077 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.12420 -40.02183 -37.57083 -37.30977 -36.42705 -33.62569 -31.64025 -31.57334 -28.40819 -26.88322 -25.03035 -24.44966 -23.32069 -21.51818 -20.23768 -18.95122 -18.52724 -17.70504 -16.94188 -16.40698 -16.14396 -15.92273 -15.79034 -15.05060 -14.82724 -14.70992 -14.46274 -13.85518 -13.41239 -13.25333 -13.12817 -12.90368 -12.68416 -12.62928 -12.51050 -12.41359 -12.17400 -12.15829 -11.63644 -11.59117 -11.39760 -11.00831 -10.38923 -9.78020 -9.67729 -9.48361 -8.35643 -6.00921 0.19316 0.31921 1.25168 1.37172 1.39108 1.50171 1.88027 2.26408 2.59613 2.94611 3.01084 3.18771 3.60584 3.78499 3.89473 4.00075 4.14899 4.21001 4.35182 4.43919 4.51417 4.65678 4.70560 4.79472 4.98533 5.01673 5.04667 5.14458 5.34858 5.35385 5.42552 5.49838 5.54141 5.92718 6.09179 6.48331 7.15376 7.45909 8.03644 8.67630 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.026852 B = 0.004413 C = 0.004135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.492281 B = 6344.033479 C = 6770.301983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.124 3.876 2 N -0.459 5.459 3 C -0.347 4.347 4 H 0.069 0.931 5 C -0.001 4.001 6 N -0.896 5.896 7 Si 0.990 3.010 8 H -0.265 1.265 9 H -0.268 1.268 10 H -0.279 1.279 11 C 0.463 3.537 12 O -0.634 6.634 13 C -0.163 4.163 14 H 0.129 0.871 15 C -0.121 4.121 16 C -0.098 4.098 17 H 0.097 0.903 18 C -0.055 4.055 19 C -0.112 4.112 20 C -0.106 4.106 21 C -0.109 4.109 22 C -0.117 4.117 23 C -0.054 4.054 24 Cl -0.089 7.089 25 H 0.039 0.961 26 H 0.058 0.942 27 H 0.069 0.931 28 H 0.274 0.726 29 H 0.146 0.854 30 H 0.092 0.908 31 H 0.153 0.847 32 H 0.164 0.836 33 H 0.164 0.836 34 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.599 -18.135 -0.448 19.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.019 4.019 2 N -0.177 5.177 3 C -0.475 4.475 4 H 0.086 0.914 5 C -0.203 4.203 6 N -0.535 5.535 7 Si 0.813 3.187 8 H -0.190 1.190 9 H -0.192 1.192 10 H -0.205 1.205 11 C 0.253 3.747 12 O -0.522 6.522 13 C -0.184 4.184 14 H 0.147 0.853 15 C -0.159 4.159 16 C -0.117 4.117 17 H 0.115 0.885 18 C -0.056 4.056 19 C -0.130 4.130 20 C -0.124 4.124 21 C -0.127 4.127 22 C -0.135 4.135 23 C -0.081 4.081 24 Cl -0.060 7.060 25 H 0.058 0.942 26 H 0.077 0.923 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.163 0.837 30 H 0.110 0.890 31 H 0.171 0.829 32 H 0.182 0.818 33 H 0.181 0.819 34 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -6.052 -17.893 -0.310 18.891 hybrid contribution 0.986 1.417 0.274 1.748 sum -5.066 -16.476 -0.036 17.237 Atomic orbital electron populations 1.21410 0.79276 1.00855 1.00361 1.43747 1.06826 1.04390 1.62743 1.19577 1.00456 0.86225 1.41281 0.91351 1.26098 0.97034 1.02958 0.94221 1.70062 1.19672 1.30899 1.32845 0.85063 0.77917 0.76747 0.78994 1.18958 1.19193 1.20465 1.20122 0.87283 0.85506 0.81835 1.90465 1.16167 1.87948 1.57606 1.22155 1.01355 0.88720 1.06151 0.85281 1.23235 1.03121 0.99650 0.89848 1.20940 0.98418 0.91570 1.00799 0.88510 1.19086 0.95601 0.95704 0.95227 1.21346 0.93679 0.96955 1.01001 1.21646 1.01026 0.95016 0.94708 1.21531 0.93062 1.00520 0.97616 1.21311 0.97614 0.94707 0.99884 1.21106 0.88755 0.98838 0.99362 1.98379 1.28912 1.85742 1.92950 0.94225 0.92332 0.91231 0.91623 0.83665 0.88977 0.82923 0.81848 0.81853 0.83729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.61 8.17 127.77 1.04 6.65 16 2 N -0.46 -24.83 3.01 -658.88 -1.98 -26.81 16 3 C -0.35 -20.57 9.24 84.04 0.78 -19.79 16 4 H 0.07 4.32 7.45 -2.91 -0.02 4.30 16 5 C 0.00 -0.07 5.05 84.93 0.43 0.36 16 6 N -0.90 -48.76 10.83 21.66 0.23 -48.52 16 7 Si 0.99 43.55 29.57 68.60 2.03 45.58 16 8 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 9 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 10 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 11 C 0.46 24.05 7.41 87.66 0.65 24.70 16 12 O -0.63 -38.25 15.97 -3.07 -0.05 -38.30 16 13 C -0.16 -6.16 4.44 -11.54 -0.05 -6.21 16 14 H 0.13 4.42 7.36 -2.38 -0.02 4.40 16 15 C -0.12 -3.52 9.57 30.61 0.29 -3.23 16 16 C -0.10 -3.37 5.07 -11.52 -0.06 -3.42 16 17 H 0.10 3.97 6.68 -2.38 -0.02 3.95 16 18 C -0.06 -1.55 5.61 -19.84 -0.11 -1.66 16 19 C -0.11 -2.26 9.30 22.26 0.21 -2.05 16 20 C -0.11 -1.61 10.05 22.27 0.22 -1.38 16 21 C -0.11 -1.69 10.05 22.27 0.22 -1.47 16 22 C -0.12 -2.46 9.83 22.29 0.22 -2.24 16 23 C -0.05 -1.53 6.31 22.33 0.14 -1.39 16 24 Cl -0.09 -2.90 27.41 -2.72 -0.07 -2.97 16 25 H 0.04 1.84 7.83 -2.39 -0.02 1.82 16 26 H 0.06 2.79 6.80 -2.39 -0.02 2.77 16 27 H 0.07 2.49 6.90 -2.39 -0.02 2.48 16 28 H 0.27 13.92 8.31 -92.71 -0.77 13.15 16 29 H 0.15 2.82 6.18 -2.39 -0.01 2.81 16 30 H 0.09 2.87 8.14 -2.39 -0.02 2.85 16 31 H 0.15 2.37 6.02 -2.91 -0.02 2.35 16 32 H 0.16 1.31 8.06 -2.91 -0.02 1.29 16 33 H 0.16 1.38 8.06 -2.91 -0.02 1.36 16 34 H 0.14 2.53 8.06 -2.91 -0.02 2.51 16 Total: -1.00 -73.97 304.05 5.26 -68.71 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: 1.12 Total: 13.45 kcal Atomic # 6 Polarization: -15.12 SS G_CDS: 3.98 Total: -11.13 kcal Atomic # 7 Polarization: -73.58 SS G_CDS: -1.75 Total: -75.33 kcal Atomic # 8 Polarization: -38.25 SS G_CDS: -0.05 Total: -38.30 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Atomic # 17 Polarization: -2.90 SS G_CDS: -0.07 Total: -2.97 kcal Total: -73.97 5.26 -68.71 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069893936.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.776 kcal (2) G-P(sol) polarization free energy of solvation -73.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds