Wall clock time and date at job start Fri Apr 10 2020 14:01:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.37102 * 120.00250 * 2 1 4 4 H 1.07999 * 119.99484 * 142.72333 * 3 2 1 5 5 C 1.38947 * 119.99939 * 322.73104 * 3 2 1 6 6 N 1.31413 * 120.00129 * 158.50357 * 5 3 2 7 7 Si 1.86800 * 119.99918 * 338.49775 * 5 3 2 8 8 H 1.48506 * 109.46949 * 95.74446 * 7 5 3 9 9 H 1.48497 * 109.47271 * 215.74028 * 7 5 3 10 10 H 1.48495 * 109.47342 * 335.74589 * 7 5 3 11 11 C 1.34781 * 120.00043 * 180.02562 * 2 1 3 12 12 O 1.21288 * 120.00369 * 179.97438 * 11 2 1 13 13 C 1.50700 * 119.99687 * 359.97438 * 11 2 1 14 14 H 1.09000 * 115.56616 * 34.30751 * 13 11 2 15 15 C 1.53003 * 117.49725 * 248.62388 * 13 11 2 16 16 C 1.53005 * 117.49860 * 180.02562 * 13 11 2 17 17 H 1.08993 * 117.49772 * 359.97438 * 16 13 11 18 18 C 1.50698 * 117.49555 * 214.97890 * 16 13 11 19 19 C 1.38238 * 120.01048 * 299.70333 * 18 16 13 20 20 C 1.38217 * 120.01639 * 179.74972 * 19 18 16 21 21 C 1.38267 * 120.02427 * 0.55419 * 20 19 18 22 22 C 1.38197 * 120.01144 * 359.70212 * 21 20 19 23 23 C 1.38334 * 120.00346 * 119.98883 * 18 16 13 24 24 Cl 1.73592 * 120.01566 * 359.97438 * 23 18 16 25 25 H 1.09010 * 109.46707 * 265.05330 * 1 2 3 26 26 H 1.08996 * 109.47038 * 25.04045 * 1 2 3 27 27 H 1.08998 * 109.47718 * 145.05101 * 1 2 3 28 28 H 0.96993 * 119.99567 * 179.97438 * 6 5 3 29 29 H 1.09000 * 117.49757 * 145.02687 * 15 13 11 30 30 H 1.08993 * 117.49925 * 359.97438 * 15 13 11 31 31 H 1.08001 * 119.99009 * 0.02562 * 19 18 16 32 32 H 1.07998 * 119.99014 * 180.25598 * 20 19 18 33 33 H 1.07997 * 119.99443 * 179.71931 * 21 20 19 34 34 H 1.08006 * 120.00466 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1506 1.1873 0.0000 4 1 3.0651 1.2827 0.5665 5 6 1.6687 2.2678 -0.7287 6 7 2.0455 3.4885 -0.4208 7 14 0.4853 1.9851 -2.1461 8 1 -0.9100 2.1594 -1.6683 9 1 0.7643 2.9646 -3.2268 10 1 0.6605 0.6067 -2.6699 11 6 2.1389 -1.1672 -0.0005 12 8 3.3518 -1.1673 -0.0010 13 6 1.3854 -2.4723 -0.0005 14 1 0.4466 -2.4734 -0.5544 15 6 1.4610 -3.3317 1.2631 16 6 2.2074 -3.7627 -0.0005 17 1 3.2932 -3.6677 -0.0010 18 6 1.6575 -4.9380 -0.7669 19 6 0.4305 -5.4743 -0.4235 20 6 -0.0764 -6.5489 -1.1296 21 6 0.6486 -7.0955 -2.1724 22 6 1.8777 -6.5637 -2.5132 23 6 2.3831 -5.4842 -1.8103 24 17 3.9270 -4.8156 -2.2378 25 1 -0.3633 -0.0886 1.0239 26 1 -0.3633 0.9310 -0.4350 27 1 -0.3634 -0.8423 -0.5887 28 1 1.7093 4.2426 -0.9298 29 1 0.5720 -3.8982 1.5404 30 1 2.0561 -2.9534 2.0941 31 1 -0.1342 -5.0506 0.3938 32 1 -1.0369 -6.9649 -0.8636 33 1 0.2541 -7.9381 -2.7209 34 1 2.4437 -6.9904 -3.3280 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069893938.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:01:20 Heat of formation + Delta-G solvation = 4.424274 kcal Electronic energy + Delta-G solvation = -19041.834276 eV Core-core repulsion = 15966.139282 eV Total energy + Delta-G solvation = -3075.694994 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.077 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.21836 -40.11263 -37.61711 -37.32337 -36.52414 -34.13484 -31.65226 -31.59321 -28.39118 -27.45683 -25.01706 -24.41560 -23.31923 -21.48984 -20.23015 -19.11383 -18.59454 -17.73111 -17.52113 -16.51918 -16.24530 -15.99428 -15.70446 -15.04218 -14.72547 -14.61357 -14.54154 -14.40522 -14.12824 -13.71454 -13.25503 -12.91968 -12.74047 -12.65247 -12.49615 -12.32857 -12.15672 -11.86479 -11.66782 -11.61386 -11.41111 -11.08092 -10.43552 -9.78662 -9.72912 -9.48934 -8.54988 -6.17808 0.18791 0.31770 1.16126 1.25056 1.29778 1.42792 1.78770 2.14866 2.54453 2.68685 2.89916 3.08305 3.54246 3.73284 3.86166 3.92807 4.14669 4.15417 4.20119 4.36915 4.43605 4.51084 4.63219 4.69596 4.76708 4.81904 4.98384 5.04040 5.14055 5.35103 5.49961 5.50735 5.53803 5.92623 5.99478 6.53925 6.90522 7.26570 7.85458 8.62697 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.023033 B = 0.004939 C = 0.004776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.369873 B = 5668.314878 C = 5860.889128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.480 5.480 3 C -0.339 4.339 4 H 0.041 0.959 5 C 0.012 3.988 6 N -0.911 5.911 7 Si 0.953 3.047 8 H -0.233 1.233 9 H -0.289 1.289 10 H -0.263 1.263 11 C 0.481 3.519 12 O -0.618 6.618 13 C -0.169 4.169 14 H 0.145 0.855 15 C -0.118 4.118 16 C -0.101 4.101 17 H 0.095 0.905 18 C -0.055 4.055 19 C -0.110 4.110 20 C -0.106 4.106 21 C -0.109 4.109 22 C -0.117 4.117 23 C -0.054 4.054 24 Cl -0.090 7.090 25 H 0.078 0.922 26 H 0.055 0.945 27 H 0.094 0.906 28 H 0.281 0.719 29 H 0.150 0.850 30 H 0.089 0.911 31 H 0.157 0.843 32 H 0.164 0.836 33 H 0.162 0.838 34 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.882 -23.173 -2.729 26.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.201 5.201 3 C -0.467 4.467 4 H 0.059 0.941 5 C -0.190 4.190 6 N -0.548 5.548 7 Si 0.776 3.224 8 H -0.158 1.158 9 H -0.216 1.216 10 H -0.187 1.187 11 C 0.271 3.729 12 O -0.503 6.503 13 C -0.190 4.190 14 H 0.162 0.838 15 C -0.155 4.155 16 C -0.120 4.120 17 H 0.113 0.887 18 C -0.056 4.056 19 C -0.127 4.127 20 C -0.123 4.123 21 C -0.127 4.127 22 C -0.136 4.136 23 C -0.081 4.081 24 Cl -0.061 7.061 25 H 0.097 0.903 26 H 0.073 0.927 27 H 0.113 0.887 28 H 0.091 0.909 29 H 0.168 0.832 30 H 0.108 0.892 31 H 0.174 0.826 32 H 0.182 0.818 33 H 0.180 0.820 34 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -11.164 -22.861 -2.779 25.592 hybrid contribution 0.833 1.051 -0.614 1.475 sum -10.330 -21.810 -3.394 24.370 Atomic orbital electron populations 1.22245 0.79932 1.02529 1.03522 1.43734 1.06192 1.04321 1.65869 1.18671 1.09515 0.88078 1.30423 0.94059 1.26178 0.99885 0.93795 0.99173 1.69865 1.46034 0.99249 1.39663 0.85778 0.79588 0.78680 0.78330 1.15760 1.21604 1.18704 1.20364 0.87327 0.85527 0.79641 1.90518 1.16552 1.87884 1.55336 1.22312 1.01771 0.88223 1.06687 0.83787 1.23234 1.03255 0.99373 0.89673 1.20940 0.98482 0.91560 1.00997 0.88653 1.19061 0.95707 0.95755 0.95060 1.21359 0.93595 0.96883 1.00908 1.21651 1.01009 0.95052 0.94635 1.21530 0.93070 1.00482 0.97645 1.21302 0.97610 0.94658 1.00004 1.21116 0.88852 0.98761 0.99342 1.98386 1.29602 1.85556 1.92577 0.90318 0.92662 0.88742 0.90925 0.83199 0.89210 0.82577 0.81823 0.82000 0.83904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.20 8.80 127.77 1.12 3.33 16 2 N -0.48 -24.10 2.58 -658.88 -1.70 -25.81 16 3 C -0.34 -20.71 9.37 84.04 0.79 -19.92 16 4 H 0.04 2.96 7.91 -2.91 -0.02 2.94 16 5 C 0.01 0.68 5.29 84.93 0.45 1.13 16 6 N -0.91 -55.39 13.96 21.66 0.30 -55.09 16 7 Si 0.95 42.81 24.96 68.60 1.71 44.53 16 8 H -0.23 -8.90 6.70 99.48 0.67 -8.24 16 9 H -0.29 -12.97 7.11 99.48 0.71 -12.27 16 10 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 11 C 0.48 23.52 7.41 87.66 0.65 24.17 16 12 O -0.62 -36.57 16.12 -3.05 -0.05 -36.62 16 13 C -0.17 -5.70 4.94 -11.54 -0.06 -5.76 16 14 H 0.14 3.96 6.51 -2.39 -0.02 3.95 16 15 C -0.12 -3.08 9.56 30.58 0.29 -2.79 16 16 C -0.10 -3.17 5.06 -11.55 -0.06 -3.23 16 17 H 0.10 3.71 6.69 -2.39 -0.02 3.69 16 18 C -0.06 -1.39 5.61 -19.84 -0.11 -1.50 16 19 C -0.11 -1.88 9.30 22.26 0.21 -1.67 16 20 C -0.11 -1.34 10.05 22.27 0.22 -1.12 16 21 C -0.11 -1.48 10.05 22.27 0.22 -1.25 16 22 C -0.12 -2.26 9.83 22.29 0.22 -2.04 16 23 C -0.05 -1.42 6.31 22.33 0.14 -1.28 16 24 Cl -0.09 -2.81 27.42 -2.72 -0.07 -2.88 16 25 H 0.08 2.49 8.14 -2.38 -0.02 2.47 16 26 H 0.06 2.14 3.44 -2.39 -0.01 2.13 16 27 H 0.09 2.71 6.22 -2.39 -0.01 2.70 16 28 H 0.28 15.57 8.31 -92.71 -0.77 14.80 16 29 H 0.15 2.40 6.17 -2.39 -0.01 2.38 16 30 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 31 H 0.16 1.87 6.02 -2.91 -0.02 1.85 16 32 H 0.16 0.93 8.06 -2.91 -0.02 0.91 16 33 H 0.16 1.11 8.06 -2.91 -0.02 1.09 16 34 H 0.14 2.30 8.06 -2.91 -0.02 2.28 16 Total: -1.00 -80.84 299.25 5.37 -75.47 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: 1.09 Total: 12.32 kcal Atomic # 6 Polarization: -16.02 SS G_CDS: 4.09 Total: -11.93 kcal Atomic # 7 Polarization: -79.49 SS G_CDS: -1.40 Total: -80.89 kcal Atomic # 8 Polarization: -36.57 SS G_CDS: -0.05 Total: -36.62 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 1.71 Total: 44.53 kcal Atomic # 17 Polarization: -2.81 SS G_CDS: -0.07 Total: -2.88 kcal Total: -80.84 5.37 -75.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069893938.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.897 kcal (2) G-P(sol) polarization free energy of solvation -80.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds