Wall clock time and date at job start Fri Apr 10 2020 14:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.37095 * 119.99905 * 2 1 4 4 H 1.07997 * 119.99972 * 152.34164 * 3 2 1 5 5 C 1.38951 * 120.00118 * 332.34087 * 3 2 1 6 6 N 1.31412 * 119.99918 * 330.78471 * 5 3 2 7 7 Si 1.86802 * 120.00023 * 150.78591 * 5 3 2 8 8 H 1.48503 * 109.47118 * 180.02562 * 7 5 3 9 9 H 1.48498 * 109.47339 * 60.00087 * 7 5 3 10 10 H 1.48496 * 109.47104 * 299.99767 * 7 5 3 11 11 C 1.34779 * 120.00090 * 179.97438 * 2 1 3 12 12 O 1.21283 * 119.99981 * 179.97438 * 11 2 1 13 13 C 1.50701 * 119.99742 * 359.97438 * 11 2 1 14 14 H 1.09001 * 115.55557 * 325.72019 * 13 11 2 15 15 C 1.53004 * 117.49767 * 111.38891 * 13 11 2 16 16 C 1.53003 * 117.49671 * 180.02562 * 13 11 2 17 17 H 1.09003 * 117.49460 * 145.02449 * 16 13 11 18 18 C 1.50700 * 117.49903 * 0.02562 * 16 13 11 19 19 C 1.38239 * 120.00498 * 299.72200 * 18 16 13 20 20 C 1.38217 * 120.01031 * 179.74894 * 19 18 16 21 21 C 1.38257 * 120.02756 * 0.54778 * 20 19 18 22 22 C 1.38192 * 120.01305 * 359.70661 * 21 20 19 23 23 C 1.38325 * 120.00859 * 119.99983 * 18 16 13 24 24 Cl 1.73604 * 120.01087 * 0.02562 * 23 18 16 25 25 H 1.08998 * 109.47134 * 95.32778 * 1 2 3 26 26 H 1.09004 * 109.47246 * 215.33237 * 1 2 3 27 27 H 1.09002 * 109.47150 * 335.32692 * 1 2 3 28 28 H 0.96995 * 119.99919 * 353.69507 * 6 5 3 29 29 H 1.08996 * 117.50198 * 214.97546 * 15 13 11 30 30 H 1.09004 * 117.50055 * 0.02562 * 15 13 11 31 31 H 1.08004 * 119.98927 * 0.02562 * 19 18 16 32 32 H 1.08001 * 119.98520 * 180.25281 * 20 19 18 33 33 H 1.08006 * 119.99558 * 179.72416 * 21 20 19 34 34 H 1.08003 * 120.00849 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1379 1.2407 0.4342 5 6 1.5748 2.3219 -0.5586 6 7 0.7148 2.2044 -1.5453 7 14 2.0234 4.0141 0.0930 8 1 1.2779 5.0503 -0.6658 9 1 3.4828 4.2359 -0.0684 10 1 1.6654 4.1015 1.5315 11 6 2.1389 -1.1672 0.0005 12 8 3.3517 -1.1672 0.0001 13 6 1.3854 -2.4723 0.0017 14 1 0.4468 -2.4728 0.5559 15 6 1.4603 -3.3324 -1.2615 16 6 2.2075 -3.7627 0.0028 17 1 1.8097 -4.6123 0.5579 18 6 3.7088 -3.6313 0.0033 19 6 4.3461 -2.9804 -1.0365 20 6 5.7226 -2.8553 -1.0336 21 6 6.4637 -3.3908 0.0034 22 6 5.8282 -4.0462 1.0408 23 6 4.4498 -4.1669 1.0413 24 17 3.6507 -4.9913 2.3435 25 1 -0.3633 -0.0954 -1.0232 26 1 -0.3634 -0.8384 0.5943 27 1 -0.3633 0.9339 0.4290 28 1 0.5506 1.3359 -1.9447 29 1 0.5712 -3.8991 -1.5380 30 1 2.0550 -2.9545 -2.0932 31 1 3.7678 -2.5657 -1.8490 32 1 6.2197 -2.3431 -1.8441 33 1 7.5397 -3.2966 0.0029 34 1 6.4072 -4.4641 1.8511 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069893940.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:01:26 Heat of formation + Delta-G solvation = 24.778303 kcal Electronic energy + Delta-G solvation = -19635.695397 eV Core-core repulsion = 16560.883020 eV Total energy + Delta-G solvation = -3074.812377 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.077 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -39.89416 -38.22931 -36.20010 -36.00485 -34.60718 -31.60373 -30.27291 -30.19246 -26.55127 -25.01020 -23.70933 -22.69743 -22.07992 -20.30424 -18.70492 -17.53125 -16.96854 -16.17111 -15.11559 -14.93345 -14.65118 -14.27024 -13.93034 -13.73696 -13.47867 -13.24573 -13.15577 -12.18814 -11.97931 -11.75696 -11.71754 -11.38096 -11.18849 -11.13406 -10.87252 -10.83120 -10.38626 -10.35147 -10.21408 -10.04231 -10.00522 -8.93675 -8.74820 -8.22672 -7.80911 -7.62915 -6.65478 -3.90141 1.60091 1.76451 2.47755 3.26072 3.34849 3.52878 3.54718 4.08747 4.19429 4.38938 4.66177 4.85990 5.04751 5.11407 5.27297 5.33515 5.36472 5.48553 5.65613 5.73764 5.77167 5.91353 6.09436 6.10742 6.18585 6.25909 6.36492 6.39836 6.60186 6.61935 6.82439 6.96058 7.26093 7.89469 8.09821 8.62999 8.92997 9.40505 9.90091 10.60079 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.022097 B = 0.005548 C = 0.005117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.825566 B = 5046.096337 C = 5470.713055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.447 5.447 3 C -0.402 4.402 4 H 0.088 0.912 5 C 0.010 3.990 6 N -0.872 5.872 7 Si 1.070 2.930 8 H -0.280 1.280 9 H -0.283 1.283 10 H -0.284 1.284 11 C 0.469 3.531 12 O -0.561 6.561 13 C -0.159 4.159 14 H 0.114 0.886 15 C -0.153 4.153 16 C -0.099 4.099 17 H 0.117 0.883 18 C -0.021 4.021 19 C -0.027 4.027 20 C -0.124 4.124 21 C -0.114 4.114 22 C -0.128 4.128 23 C -0.029 4.029 24 Cl -0.088 7.088 25 H 0.044 0.956 26 H 0.045 0.955 27 H 0.069 0.931 28 H 0.274 0.726 29 H 0.101 0.899 30 H 0.100 0.900 31 H 0.121 0.879 32 H 0.119 0.881 33 H 0.121 0.879 34 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.509 -11.955 1.832 12.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.166 5.166 3 C -0.529 4.529 4 H 0.106 0.894 5 C -0.197 4.197 6 N -0.506 5.506 7 Si 0.896 3.104 8 H -0.205 1.205 9 H -0.209 1.209 10 H -0.211 1.211 11 C 0.257 3.743 12 O -0.444 6.444 13 C -0.180 4.180 14 H 0.132 0.868 15 C -0.190 4.190 16 C -0.118 4.118 17 H 0.134 0.866 18 C -0.021 4.021 19 C -0.045 4.045 20 C -0.142 4.142 21 C -0.132 4.132 22 C -0.147 4.147 23 C -0.055 4.055 24 Cl -0.060 7.060 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.088 0.912 28 H 0.085 0.915 29 H 0.120 0.880 30 H 0.118 0.882 31 H 0.139 0.861 32 H 0.137 0.863 33 H 0.139 0.861 34 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 2.651 -10.359 1.800 10.843 hybrid contribution -0.015 -1.517 0.357 1.558 sum 2.635 -11.876 2.157 12.355 Atomic orbital electron populations 1.21672 0.82798 1.01287 1.00155 1.43586 1.04417 1.05227 1.63376 1.20314 1.04875 0.86077 1.41661 0.89372 1.26338 0.96050 1.03679 0.93677 1.70768 1.34524 1.28105 1.17233 0.83493 0.76469 0.74318 0.76105 1.20533 1.20927 1.21084 1.19219 0.87637 0.83617 0.83789 1.90558 1.13245 1.85895 1.54745 1.22416 1.00972 0.91754 1.02883 0.86827 1.23053 1.02268 1.02085 0.91612 1.21021 0.90330 0.98170 1.02266 0.86559 1.18619 0.92950 0.97159 0.93412 1.20693 0.93932 0.92826 0.97046 1.21012 0.94100 1.00046 0.99051 1.20888 0.99429 0.98658 0.94209 1.20740 0.92091 1.02147 0.99724 1.20532 0.92548 1.01723 0.90698 1.98309 1.80757 1.77655 1.49257 0.93788 0.93672 0.91210 0.91456 0.88032 0.88172 0.86077 0.86301 0.86104 0.85939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.81 8.48 59.85 0.51 2.31 16 2 N -0.45 -11.19 2.84 -122.19 -0.35 -11.53 16 3 C -0.40 -11.21 8.98 -14.93 -0.13 -11.34 16 4 H 0.09 2.64 7.63 -52.49 -0.40 2.24 16 5 C 0.01 0.28 4.61 -17.47 -0.08 0.20 16 6 N -0.87 -24.00 12.80 55.50 0.71 -23.29 16 7 Si 1.07 23.77 30.01 -169.99 -5.10 18.66 16 8 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 9 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 10 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 11 C 0.47 11.05 7.28 -10.98 -0.08 10.97 16 12 O -0.56 -14.55 11.47 5.56 0.06 -14.49 16 13 C -0.16 -2.89 5.30 -91.77 -0.49 -3.37 16 14 H 0.11 1.85 6.52 -51.93 -0.34 1.51 16 15 C -0.15 -2.32 9.58 -26.71 -0.26 -2.58 16 16 C -0.10 -1.63 5.55 -91.75 -0.51 -2.14 16 17 H 0.12 1.70 7.16 -51.93 -0.37 1.33 16 18 C -0.02 -0.37 4.36 -104.59 -0.46 -0.82 16 19 C -0.03 -0.49 6.19 -39.59 -0.24 -0.73 16 20 C -0.12 -2.06 10.05 -39.58 -0.40 -2.46 16 21 C -0.11 -1.72 10.04 -39.59 -0.40 -2.12 16 22 C -0.13 -2.00 9.83 -39.55 -0.39 -2.39 16 23 C -0.03 -0.49 6.31 -39.50 -0.25 -0.74 16 24 Cl -0.09 -1.34 27.42 -51.86 -1.42 -2.76 16 25 H 0.04 0.92 7.06 -51.93 -0.37 0.55 16 26 H 0.04 0.79 6.23 -51.93 -0.32 0.47 16 27 H 0.07 1.56 7.36 -51.93 -0.38 1.17 16 28 H 0.27 7.56 6.65 -40.82 -0.27 7.28 16 29 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.10 1.60 6.17 -51.93 -0.32 1.28 16 31 H 0.12 2.27 5.80 -52.48 -0.30 1.97 16 32 H 0.12 1.75 8.06 -52.49 -0.42 1.33 16 33 H 0.12 1.47 8.06 -52.48 -0.42 1.04 16 34 H 0.12 1.61 8.06 -52.48 -0.42 1.19 16 LS Contribution 295.30 15.07 4.45 4.45 Total: -1.00 -30.80 295.30 -8.38 -39.19 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -3.57 Total: 4.97 kcal Atomic # 6 Polarization: -12.03 SS G_CDS: -3.17 Total: -15.21 kcal Atomic # 7 Polarization: -35.18 SS G_CDS: 0.36 Total: -34.82 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: 0.06 Total: -14.49 kcal Atomic # 14 Polarization: 23.77 SS G_CDS: -5.10 Total: 18.66 kcal Atomic # 17 Polarization: -1.34 SS G_CDS: -1.42 Total: -2.76 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -30.80 -8.38 -39.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069893940.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.965 kcal (2) G-P(sol) polarization free energy of solvation -30.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds