Wall clock time and date at job start Fri Apr 10 2020 14:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.37104 * 119.99800 * 2 1 4 4 H 1.07998 * 119.99568 * 147.64152 * 3 2 1 5 5 C 1.38943 * 120.00120 * 327.91870 * 3 2 1 6 6 N 1.31410 * 120.00178 * 159.25918 * 5 3 2 7 7 Si 1.86804 * 120.00112 * 339.26265 * 5 3 2 8 8 H 1.48499 * 109.47518 * 85.53165 * 7 5 3 9 9 H 1.48500 * 109.47064 * 205.53341 * 7 5 3 10 10 H 1.48499 * 109.47094 * 325.52852 * 7 5 3 11 11 C 1.34774 * 120.00049 * 180.02562 * 2 1 3 12 12 O 1.21293 * 119.99984 * 179.97438 * 11 2 1 13 13 C 1.50702 * 120.00035 * 0.02562 * 11 2 1 14 14 H 1.09004 * 115.54884 * 34.41521 * 13 11 2 15 15 C 1.52996 * 117.49643 * 248.74333 * 13 11 2 16 16 C 1.52995 * 117.49614 * 180.08448 * 13 11 2 17 17 H 1.09007 * 117.49711 * 214.97492 * 16 13 11 18 18 C 1.50695 * 117.50447 * 0.02562 * 16 13 11 19 19 C 1.38261 * 119.99622 * 59.71791 * 18 16 13 20 20 C 1.38216 * 120.03151 * 179.77060 * 19 18 16 21 21 C 1.38237 * 120.00867 * 0.51206 * 20 19 18 22 22 C 1.38337 * 119.98775 * 359.74362 * 21 20 19 23 23 Cl 1.73600 * 120.01114 * 180.02562 * 22 21 20 24 24 C 1.38196 * 119.99136 * 240.00157 * 18 16 13 25 25 H 1.08999 * 109.47409 * 95.21454 * 1 2 3 26 26 H 1.08998 * 109.47102 * 215.21476 * 1 2 3 27 27 H 1.09000 * 109.46994 * 335.21185 * 1 2 3 28 28 H 0.96997 * 120.00414 * 180.02562 * 6 5 3 29 29 H 1.09001 * 117.50193 * 0.02562 * 15 13 11 30 30 H 1.08999 * 117.49665 * 144.99565 * 15 13 11 31 31 H 1.08001 * 119.98057 * 0.02562 * 19 18 16 32 32 H 1.07999 * 119.99928 * 180.25404 * 20 19 18 33 33 H 1.08004 * 120.00798 * 179.76910 * 21 20 19 34 34 H 1.07997 * 120.00995 * 359.97438 * 24 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1505 1.1874 0.0000 4 1 3.1047 1.2600 0.5006 5 6 1.6149 2.2988 -0.6391 6 7 2.0276 3.5042 -0.3172 7 14 0.3082 2.0796 -1.9558 8 1 -1.0294 1.9940 -1.3165 9 1 0.3404 3.2391 -2.8830 10 1 0.5748 0.8314 -2.7149 11 6 2.1389 -1.1672 -0.0005 12 8 3.3519 -1.1672 -0.0010 13 6 1.3854 -2.4723 -0.0017 14 1 0.4480 -2.4734 -0.5579 15 6 1.4579 -3.3309 1.2626 16 6 2.2076 -3.7626 -0.0002 17 1 1.8108 -4.6128 -0.5551 18 6 3.7088 -3.6312 0.0029 19 6 4.3427 -2.9697 1.0383 20 6 5.7199 -2.8529 1.0443 21 6 6.4636 -3.3884 0.0094 22 6 5.8296 -4.0459 -1.0296 23 17 6.7631 -4.7192 -2.3292 24 6 4.4512 -4.1670 -1.0323 25 1 -0.3634 -0.0934 -1.0234 26 1 -0.3633 -0.8396 0.5926 27 1 -0.3633 0.9330 0.4309 28 1 1.6534 4.2801 -0.7631 29 1 2.0502 -2.9516 2.0953 30 1 0.5681 -3.8969 1.5382 31 1 3.7616 -2.5475 1.8449 32 1 6.2147 -2.3396 1.8554 33 1 7.5395 -3.2939 0.0122 34 1 3.9558 -4.6801 -1.8432 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334384807.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:01:46 Heat of formation + Delta-G solvation = 31.751798 kcal Electronic energy + Delta-G solvation = -19449.532513 eV Core-core repulsion = 16375.022530 eV Total energy + Delta-G solvation = -3074.509983 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.077 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.98735 -38.31475 -36.49320 -35.74343 -34.61283 -32.05055 -30.65032 -29.98381 -26.61904 -25.70543 -23.69163 -22.77785 -22.21929 -20.31731 -18.51572 -17.18710 -16.99977 -16.21480 -15.49096 -15.08964 -14.96741 -14.39427 -14.08462 -13.80456 -13.33496 -13.15943 -12.93081 -12.60894 -12.25397 -12.20761 -11.86805 -11.74852 -11.33154 -11.21891 -10.92839 -10.73202 -10.56180 -10.51176 -10.30432 -10.15840 -9.90072 -9.13676 -8.75925 -8.43112 -7.86848 -7.60147 -6.41315 -3.95806 1.60740 1.70581 2.42089 3.01653 3.19063 3.24236 3.37919 4.02328 4.13526 4.28733 4.36901 4.84748 4.95143 5.12438 5.17462 5.21209 5.29421 5.37540 5.58756 5.67680 5.79799 5.82797 5.86511 6.02466 6.03167 6.16635 6.18168 6.28862 6.31092 6.57602 6.76939 6.97395 7.23341 7.50711 8.23255 8.48483 8.93851 9.30734 9.75319 10.71128 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.021157 B = 0.005248 C = 0.004871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.151378 B = 5334.235515 C = 5746.500165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.464 5.464 3 C -0.314 4.314 4 H 0.108 0.892 5 C 0.058 3.942 6 N -0.866 5.866 7 Si 0.881 3.119 8 H -0.274 1.274 9 H -0.289 1.289 10 H -0.269 1.269 11 C 0.482 3.518 12 O -0.546 6.546 13 C -0.166 4.166 14 H 0.116 0.884 15 C -0.154 4.154 16 C -0.092 4.092 17 H 0.116 0.884 18 C -0.026 4.026 19 C -0.030 4.030 20 C -0.118 4.118 21 C -0.112 4.112 22 C -0.046 4.046 23 Cl -0.092 7.092 24 C -0.105 4.105 25 H 0.038 0.962 26 H 0.061 0.939 27 H 0.077 0.923 28 H 0.274 0.726 29 H 0.102 0.898 30 H 0.102 0.898 31 H 0.119 0.881 32 H 0.123 0.877 33 H 0.123 0.877 34 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.658 -15.161 1.525 15.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.184 5.184 3 C -0.441 4.441 4 H 0.126 0.874 5 C -0.148 4.148 6 N -0.503 5.503 7 Si 0.708 3.292 8 H -0.200 1.200 9 H -0.216 1.216 10 H -0.194 1.194 11 C 0.271 3.729 12 O -0.428 6.428 13 C -0.188 4.188 14 H 0.134 0.866 15 C -0.192 4.192 16 C -0.110 4.110 17 H 0.133 0.867 18 C -0.026 4.026 19 C -0.049 4.049 20 C -0.136 4.136 21 C -0.130 4.130 22 C -0.072 4.072 23 Cl -0.063 7.063 24 C -0.124 4.124 25 H 0.056 0.944 26 H 0.079 0.921 27 H 0.096 0.904 28 H 0.084 0.916 29 H 0.120 0.880 30 H 0.120 0.880 31 H 0.137 0.863 32 H 0.141 0.859 33 H 0.141 0.859 34 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 0.018 -14.954 1.380 15.018 hybrid contribution -0.885 0.286 -1.117 1.453 sum -0.867 -14.669 0.263 14.696 Atomic orbital electron populations 1.22004 0.83459 1.02869 0.99966 1.43691 1.03976 1.05696 1.65086 1.19099 1.06674 0.84141 1.34142 0.87408 1.25305 0.97708 0.94784 0.96967 1.69736 1.43108 0.97764 1.39680 0.87015 0.81375 0.77968 0.82821 1.20041 1.21596 1.19440 1.19286 0.87640 0.83580 0.82429 1.90605 1.13166 1.85858 1.53133 1.22460 1.01249 0.91843 1.03233 0.86596 1.23092 1.02345 1.02089 0.91637 1.20981 0.90463 0.97480 1.02112 0.86651 1.18700 0.92606 0.97183 0.94135 1.20815 0.93924 0.92713 0.97399 1.20881 0.94003 1.00153 0.98603 1.20851 0.99860 0.98727 0.93611 1.20612 0.91746 1.03254 0.91574 1.98323 1.73667 1.84511 1.49847 1.20573 0.91494 1.01698 0.98663 0.94383 0.92061 0.90435 0.91567 0.87998 0.87961 0.86280 0.85858 0.85931 0.85951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.17 7.55 59.85 0.45 1.62 16 2 N -0.46 -10.93 2.69 -122.19 -0.33 -11.26 16 3 C -0.31 -8.75 9.46 -14.93 -0.14 -8.89 16 4 H 0.11 3.39 7.80 -52.49 -0.41 2.98 16 5 C 0.06 1.59 5.19 -17.47 -0.09 1.50 16 6 N -0.87 -24.98 13.96 55.50 0.77 -24.21 16 7 Si 0.88 20.52 24.22 -169.99 -4.12 16.40 16 8 H -0.27 -5.83 6.69 56.52 0.38 -5.45 16 9 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 10 H -0.27 -6.34 7.03 56.52 0.40 -5.94 16 11 C 0.48 10.62 7.26 -10.99 -0.08 10.54 16 12 O -0.55 -13.50 11.49 5.55 0.06 -13.44 16 13 C -0.17 -2.69 4.82 -91.77 -0.44 -3.13 16 14 H 0.12 1.64 7.36 -51.93 -0.38 1.26 16 15 C -0.15 -1.99 9.58 -26.70 -0.26 -2.25 16 16 C -0.09 -1.31 6.04 -91.74 -0.55 -1.86 16 17 H 0.12 1.33 8.14 -51.93 -0.42 0.91 16 18 C -0.03 -0.43 4.37 -104.63 -0.46 -0.88 16 19 C -0.03 -0.52 6.16 -39.58 -0.24 -0.76 16 20 C -0.12 -1.90 10.05 -39.59 -0.40 -2.30 16 21 C -0.11 -1.74 9.83 -39.55 -0.39 -2.13 16 22 C -0.05 -0.72 6.32 -39.50 -0.25 -0.97 16 23 Cl -0.09 -1.30 28.96 -51.86 -1.50 -2.81 16 24 C -0.11 -1.69 9.52 -39.55 -0.38 -2.06 16 25 H 0.04 0.71 5.75 -51.93 -0.30 0.41 16 26 H 0.06 0.93 6.95 -51.93 -0.36 0.57 16 27 H 0.08 1.54 6.62 -51.93 -0.34 1.19 16 28 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 29 H 0.10 1.38 6.19 -51.93 -0.32 1.06 16 30 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.12 2.02 5.77 -52.49 -0.30 1.72 16 32 H 0.12 1.74 8.06 -52.49 -0.42 1.31 16 33 H 0.12 1.65 8.06 -52.48 -0.42 1.22 16 34 H 0.12 1.73 8.06 -52.49 -0.42 1.31 16 LS Contribution 293.49 15.07 4.42 4.42 Total: -1.00 -31.13 293.49 -7.61 -38.74 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -3.70 Total: 3.73 kcal Atomic # 6 Polarization: -8.36 SS G_CDS: -3.23 Total: -11.58 kcal Atomic # 7 Polarization: -35.92 SS G_CDS: 0.45 Total: -35.47 kcal Atomic # 8 Polarization: -13.50 SS G_CDS: 0.06 Total: -13.44 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -4.12 Total: 16.40 kcal Atomic # 17 Polarization: -1.30 SS G_CDS: -1.50 Total: -2.81 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -31.13 -7.61 -38.74 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334384807.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.489 kcal (2) G-P(sol) polarization free energy of solvation -31.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds