Wall clock time and date at job start Fri Apr 10 2020 14:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35693 * 117.00117 * 2 1 4 4 C 1.39262 * 119.39326 * 180.02562 * 3 2 1 5 5 C 1.36962 * 119.65307 * 180.02562 * 4 3 2 6 6 C 1.39962 * 118.35139 * 0.25173 * 5 4 3 7 7 N 1.35755 * 133.77656 * 179.74911 * 6 5 4 8 8 C 1.30072 * 109.49188 * 179.97438 * 7 6 5 9 9 C 1.50703 * 124.98011 * 180.02562 * 8 7 6 10 10 S 1.81397 * 109.47054 * 89.97665 * 9 8 7 11 11 C 1.81402 * 102.99850 * 180.02562 * 10 9 8 12 12 C 1.50698 * 109.46952 * 180.02562 * 11 10 9 13 13 H 1.08000 * 119.99947 * 359.97438 * 12 11 10 14 14 C 1.37880 * 120.00079 * 180.02562 * 12 11 10 15 15 N 1.31512 * 119.99883 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 120.00253 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47091 * 59.99731 * 16 14 12 18 18 H 1.48499 * 109.47313 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.47341 * 299.99915 * 16 14 12 20 20 N 1.36219 * 110.04003 * 359.44636 * 8 7 6 21 21 H 0.97008 * 126.27644 * 179.97438 * 20 8 7 22 22 C 1.37769 * 107.44181 * 0.64722 * 20 8 7 23 23 N 1.32079 * 119.39032 * 359.97438 * 3 2 1 24 24 H 1.08991 * 109.46816 * 299.99858 * 1 2 3 25 25 H 1.08999 * 109.47130 * 59.99852 * 1 2 3 26 26 H 1.08998 * 109.46731 * 179.97438 * 1 2 3 27 27 H 1.07996 * 120.17168 * 359.97438 * 4 3 2 28 28 H 1.08002 * 120.81942 * 179.97438 * 5 4 3 29 29 H 1.09003 * 109.46928 * 209.97987 * 9 8 7 30 30 H 1.08998 * 109.46607 * 329.97364 * 9 8 7 31 31 H 1.08997 * 109.46860 * 299.99756 * 11 10 9 32 32 H 1.08996 * 109.47068 * 60.00042 * 11 10 9 33 33 H 0.96998 * 120.00456 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2090 0.0000 4 6 3.4365 1.2671 -0.0005 5 6 4.0638 2.4846 0.0000 6 6 3.2734 3.6397 0.0065 7 7 3.5518 4.9683 0.0131 8 6 2.4407 5.6446 0.0168 9 6 2.3448 7.1486 0.0239 10 16 2.3061 7.7600 -1.6835 11 6 2.1921 9.5579 -1.4706 12 6 2.1494 10.2221 -2.8226 13 1 2.1875 9.6226 -3.7202 14 6 2.0628 11.5951 -2.9138 15 7 2.0169 12.3251 -1.8208 16 14 2.0106 12.4185 -4.5897 17 1 0.8262 11.9335 -5.3428 18 1 1.9172 13.8903 -4.4154 19 1 3.2464 12.0863 -5.3432 20 7 1.3767 4.7943 0.0005 21 1 0.4400 5.0469 -0.0003 22 6 1.8745 3.5097 0.0006 23 7 1.3140 2.3090 -0.0005 24 1 -0.3632 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 4.0178 0.3570 -0.0005 28 1 5.1418 2.5517 0.0000 29 1 1.4335 7.4520 0.5393 30 1 3.2098 7.5653 0.5396 31 1 1.2848 9.8014 -0.9178 32 1 3.0612 9.9141 -0.9177 33 1 1.9556 13.2910 -1.8848 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413012638.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:02:04 Heat of formation + Delta-G solvation = 41.207358 kcal Electronic energy + Delta-G solvation = -17951.049707 eV Core-core repulsion = 14911.286205 eV Total energy + Delta-G solvation = -3039.763502 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.078 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.40546 -39.86955 -37.10851 -33.73790 -33.21461 -31.45758 -31.22425 -28.71568 -28.46006 -26.53406 -23.42026 -23.19623 -22.57313 -21.03793 -18.91028 -18.15793 -17.34874 -16.61015 -16.41008 -15.75390 -15.60836 -15.18707 -14.48296 -14.39921 -14.08400 -13.59320 -13.48531 -13.09262 -12.89218 -12.47848 -12.31145 -12.13546 -12.03555 -11.26532 -11.05725 -11.01594 -10.89176 -10.74852 -10.14457 -9.68881 -9.44159 -9.06594 -9.02221 -8.66661 -8.06589 -6.85059 -6.25410 -4.30230 0.67773 1.15729 2.05701 2.35171 2.94389 3.07286 3.25355 3.28689 3.32933 3.63671 3.69033 3.94392 4.25161 4.31166 4.58072 4.84382 4.89984 5.04659 5.07886 5.12065 5.13464 5.32755 5.39470 5.63386 5.67008 5.90520 5.97338 6.25618 6.88097 6.98347 7.01857 7.10482 7.64320 7.68659 7.75072 7.92713 8.71168 9.33362 10.85703 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.040335 B = 0.002964 C = 0.002908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.015282 B = 9443.019183 C = 9624.712595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.305 6.305 3 C 0.352 3.648 4 C -0.191 4.191 5 C 0.014 3.986 6 C -0.024 4.024 7 N -0.463 5.463 8 C 0.324 3.676 9 C -0.027 4.027 10 S -0.272 6.272 11 C 0.089 3.911 12 C -0.515 4.515 13 H 0.067 0.933 14 C 0.067 3.933 15 N -0.892 5.892 16 Si 0.908 3.092 17 H -0.274 1.274 18 H -0.285 1.285 19 H -0.273 1.273 20 N -0.578 5.578 21 H 0.429 0.571 22 C 0.278 3.722 23 N -0.543 5.543 24 H 0.058 0.942 25 H 0.059 0.941 26 H 0.096 0.904 27 H 0.150 0.850 28 H 0.151 0.849 29 H 0.098 0.902 30 H 0.115 0.885 31 H 0.038 0.962 32 H 0.041 0.959 33 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.485 -20.516 6.614 21.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.210 6.210 3 C 0.163 3.837 4 C -0.214 4.214 5 C -0.013 4.013 6 C -0.145 4.145 7 N -0.184 5.184 8 C 0.056 3.944 9 C -0.176 4.176 10 S -0.047 6.047 11 C -0.057 4.057 12 C -0.555 4.555 13 H 0.085 0.915 14 C -0.137 4.137 15 N -0.530 5.530 16 Si 0.734 3.266 17 H -0.199 1.199 18 H -0.210 1.210 19 H -0.198 1.198 20 N -0.193 5.193 21 H 0.269 0.731 22 C 0.041 3.959 23 N -0.273 5.273 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.114 0.886 27 H 0.168 0.832 28 H 0.169 0.831 29 H 0.116 0.884 30 H 0.133 0.867 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.388 -20.880 5.769 21.707 hybrid contribution -0.923 1.234 0.283 1.566 sum -2.311 -19.646 6.053 20.687 Atomic orbital electron populations 1.22849 0.77269 1.02885 1.02570 1.86270 1.22936 1.23949 1.87891 1.19354 0.88853 0.83327 0.92119 1.20553 0.91549 0.99212 1.10112 1.20300 1.00421 0.88168 0.92371 1.19642 0.91751 0.92865 1.10213 1.70445 1.25564 1.01495 1.20853 1.22721 0.81008 0.93178 0.97476 1.21729 1.06954 0.86573 1.02335 1.87080 1.97681 1.14549 1.05372 1.21149 1.00377 0.82702 1.01517 1.20593 1.52550 0.91328 0.90980 0.91468 1.24945 0.94514 0.96729 0.97505 1.69930 1.49150 1.06213 1.27698 0.86393 0.79026 0.77994 0.83147 1.19905 1.21005 1.19812 1.42716 1.10762 1.03242 1.62562 0.73138 1.18229 0.90800 0.85074 1.01768 1.65741 1.41066 0.96255 1.24277 0.92342 0.92242 0.88588 0.83189 0.83117 0.88401 0.86653 0.94344 0.94089 0.92331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.37 101.05 1.05 1.37 16 2 O -0.30 -3.29 10.47 -18.78 -0.20 -3.49 16 3 C 0.35 4.35 7.49 -17.06 -0.13 4.22 16 4 C -0.19 -2.03 9.96 -39.66 -0.40 -2.42 16 5 C 0.01 0.17 10.16 -39.40 -0.40 -0.23 16 6 C -0.02 -0.36 7.24 -84.64 -0.61 -0.98 16 7 N -0.46 -7.86 11.28 -8.16 -0.09 -7.96 16 8 C 0.32 5.10 7.35 -154.68 -1.14 3.97 16 9 C -0.03 -0.42 6.57 36.01 0.24 -0.19 16 10 S -0.27 -5.67 21.64 -107.50 -2.33 -7.99 16 11 C 0.09 2.21 5.70 36.00 0.21 2.41 16 12 C -0.52 -14.12 9.13 -34.44 -0.31 -14.43 16 13 H 0.07 1.85 7.71 -52.49 -0.40 1.45 16 14 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 15 N -0.89 -25.24 13.29 55.43 0.74 -24.51 16 16 Si 0.91 20.99 29.54 -169.99 -5.02 15.96 16 17 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 19 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 20 N -0.58 -8.08 6.22 -9.47 -0.06 -8.14 16 21 H 0.43 4.86 8.96 -40.82 -0.37 4.49 16 22 C 0.28 4.15 8.45 -155.60 -1.32 2.84 16 23 N -0.54 -7.55 9.22 -12.35 -0.11 -7.67 16 24 H 0.06 0.49 8.10 -51.93 -0.42 0.07 16 25 H 0.06 0.52 8.10 -51.93 -0.42 0.10 16 26 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.15 1.12 8.06 -52.49 -0.42 0.70 16 28 H 0.15 1.39 8.06 -52.49 -0.42 0.97 16 29 H 0.10 1.32 8.14 -51.92 -0.42 0.89 16 30 H 0.12 1.78 8.14 -51.92 -0.42 1.35 16 31 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 308.85 15.07 4.65 4.65 Total: -1.00 -31.47 308.85 -9.03 -40.51 By element: Atomic # 1 Polarization: 4.03 SS G_CDS: -3.71 Total: 0.33 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: -2.91 Total: -1.70 kcal Atomic # 7 Polarization: -48.74 SS G_CDS: 0.47 Total: -48.27 kcal Atomic # 8 Polarization: -3.29 SS G_CDS: -0.20 Total: -3.49 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 16 Polarization: -5.67 SS G_CDS: -2.33 Total: -7.99 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -31.47 -9.03 -40.51 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413012638.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.713 kcal (2) G-P(sol) polarization free energy of solvation -31.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds