Wall clock time and date at job start Fri Apr 10 2020 14:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35693 * 117.00117 * 2 1 4 4 C 1.39262 * 119.39326 * 180.02562 * 3 2 1 5 5 C 1.36962 * 119.65307 * 180.02562 * 4 3 2 6 6 C 1.39962 * 118.35139 * 0.25173 * 5 4 3 7 7 N 1.35755 * 133.77656 * 179.74911 * 6 5 4 8 8 C 1.30072 * 109.49188 * 179.97438 * 7 6 5 9 9 C 1.50703 * 124.98011 * 180.02562 * 8 7 6 10 10 S 1.81397 * 109.47054 * 89.97665 * 9 8 7 11 11 C 1.81402 * 102.99850 * 180.02562 * 10 9 8 12 12 C 1.50698 * 109.46952 * 180.02562 * 11 10 9 13 13 H 1.08000 * 119.99947 * 359.97438 * 12 11 10 14 14 C 1.37880 * 120.00079 * 180.02562 * 12 11 10 15 15 N 1.31512 * 119.99883 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 120.00253 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47091 * 59.99731 * 16 14 12 18 18 H 1.48499 * 109.47313 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.47341 * 299.99915 * 16 14 12 20 20 N 1.36219 * 110.04003 * 359.44636 * 8 7 6 21 21 H 0.97008 * 126.27644 * 179.97438 * 20 8 7 22 22 C 1.37769 * 107.44181 * 0.64722 * 20 8 7 23 23 N 1.32079 * 119.39032 * 359.97438 * 3 2 1 24 24 H 1.08991 * 109.46816 * 299.99858 * 1 2 3 25 25 H 1.08999 * 109.47130 * 59.99852 * 1 2 3 26 26 H 1.08998 * 109.46731 * 179.97438 * 1 2 3 27 27 H 1.07996 * 120.17168 * 359.97438 * 4 3 2 28 28 H 1.08002 * 120.81942 * 179.97438 * 5 4 3 29 29 H 1.09003 * 109.46928 * 209.97987 * 9 8 7 30 30 H 1.08998 * 109.46607 * 329.97364 * 9 8 7 31 31 H 1.08997 * 109.46860 * 299.99756 * 11 10 9 32 32 H 1.08996 * 109.47068 * 60.00042 * 11 10 9 33 33 H 0.96998 * 120.00456 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2090 0.0000 4 6 3.4365 1.2671 -0.0005 5 6 4.0638 2.4846 0.0000 6 6 3.2734 3.6397 0.0065 7 7 3.5518 4.9683 0.0131 8 6 2.4407 5.6446 0.0168 9 6 2.3448 7.1486 0.0239 10 16 2.3061 7.7600 -1.6835 11 6 2.1921 9.5579 -1.4706 12 6 2.1494 10.2221 -2.8226 13 1 2.1875 9.6226 -3.7202 14 6 2.0628 11.5951 -2.9138 15 7 2.0169 12.3251 -1.8208 16 14 2.0106 12.4185 -4.5897 17 1 0.8262 11.9335 -5.3428 18 1 1.9172 13.8903 -4.4154 19 1 3.2464 12.0863 -5.3432 20 7 1.3767 4.7943 0.0005 21 1 0.4400 5.0469 -0.0003 22 6 1.8745 3.5097 0.0006 23 7 1.3140 2.3090 -0.0005 24 1 -0.3632 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 4.0178 0.3570 -0.0005 28 1 5.1418 2.5517 0.0000 29 1 1.4335 7.4520 0.5393 30 1 3.2098 7.5653 0.5396 31 1 1.2848 9.8014 -0.9178 32 1 3.0612 9.9141 -0.9177 33 1 1.9556 13.2910 -1.8848 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413012638.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:02:04 Heat of formation + Delta-G solvation = 20.362628 kcal Electronic energy + Delta-G solvation = -17951.953603 eV Core-core repulsion = 14911.286205 eV Total energy + Delta-G solvation = -3040.667397 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.078 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -43.47981 -40.78941 -38.03375 -35.28754 -34.78678 -32.52351 -32.36614 -30.67314 -29.45816 -27.45155 -25.23414 -24.34642 -23.62761 -22.20587 -19.89713 -19.19995 -18.57394 -18.35907 -17.50387 -17.15532 -16.66719 -16.49948 -16.07184 -15.39214 -15.09455 -14.93730 -14.63931 -14.43642 -14.30043 -14.11961 -13.69047 -13.56608 -12.78542 -12.71875 -12.61615 -12.32679 -12.18106 -12.12044 -11.77302 -11.56744 -10.79251 -10.73419 -10.49342 -10.06619 -9.14510 -8.54447 -8.32938 -6.45644 -0.38171 0.18626 0.67733 1.29270 1.41418 1.43673 1.52074 1.81557 1.93982 2.11374 2.37470 2.67686 2.81460 3.02254 3.25885 3.50819 3.83630 3.99585 4.03636 4.41021 4.41759 4.45052 4.46763 4.63524 4.78731 4.91189 4.96059 4.97878 5.07951 5.30188 5.57186 5.88478 5.90700 6.15830 6.60165 6.60880 6.65944 7.22250 8.78410 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.040335 B = 0.002964 C = 0.002908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.015282 B = 9443.019183 C = 9624.712595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.304 6.304 3 C 0.348 3.652 4 C -0.177 4.177 5 C 0.015 3.985 6 C -0.053 4.053 7 N -0.484 5.484 8 C 0.309 3.691 9 C -0.009 4.009 10 S -0.288 6.288 11 C 0.094 3.906 12 C -0.539 4.539 13 H 0.060 0.940 14 C 0.019 3.981 15 N -0.922 5.922 16 Si 0.972 3.028 17 H -0.267 1.267 18 H -0.276 1.276 19 H -0.268 1.268 20 N -0.569 5.569 21 H 0.438 0.562 22 C 0.263 3.737 23 N -0.558 5.558 24 H 0.055 0.945 25 H 0.052 0.948 26 H 0.129 0.871 27 H 0.187 0.813 28 H 0.177 0.823 29 H 0.124 0.876 30 H 0.120 0.880 31 H 0.026 0.974 32 H 0.022 0.978 33 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.402 -22.447 6.408 23.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.210 6.210 3 C 0.159 3.841 4 C -0.200 4.200 5 C -0.012 4.012 6 C -0.174 4.174 7 N -0.206 5.206 8 C 0.041 3.959 9 C -0.158 4.158 10 S -0.062 6.062 11 C -0.054 4.054 12 C -0.578 4.578 13 H 0.078 0.922 14 C -0.182 4.182 15 N -0.561 5.561 16 Si 0.796 3.204 17 H -0.192 1.192 18 H -0.201 1.201 19 H -0.193 1.193 20 N -0.185 5.185 21 H 0.280 0.720 22 C 0.027 3.973 23 N -0.289 5.289 24 H 0.074 0.926 25 H 0.071 0.929 26 H 0.147 0.853 27 H 0.205 0.795 28 H 0.194 0.806 29 H 0.142 0.858 30 H 0.138 0.862 31 H 0.044 0.956 32 H 0.041 0.959 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.324 -22.819 5.562 23.525 hybrid contribution -0.961 1.566 0.434 1.887 sum -2.285 -21.254 5.996 22.201 Atomic orbital electron populations 1.23074 0.75916 1.04920 1.02062 1.86289 1.24277 1.22989 1.87421 1.19822 0.89815 0.83415 0.91033 1.20959 0.91053 1.00120 1.07848 1.20698 1.01637 0.87426 0.91399 1.20100 0.92635 0.93007 1.11668 1.70356 1.26445 1.02704 1.21057 1.22435 0.81492 0.92852 0.99129 1.21671 1.08609 0.86874 0.98625 1.86916 1.97742 1.11329 1.10208 1.20817 0.98786 0.85727 1.00046 1.20926 1.52904 0.92098 0.91830 0.92194 1.25823 0.93831 0.97322 1.01266 1.70024 1.49699 1.06611 1.29733 0.85389 0.79221 0.77210 0.78614 1.19198 1.20071 1.19341 1.42612 1.10954 1.02977 1.61954 0.72036 1.18402 0.90982 0.85491 1.02380 1.65757 1.41613 0.96272 1.25307 0.92648 0.92941 0.85332 0.79548 0.80595 0.85800 0.86189 0.95552 0.95945 0.92005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.37 113.37 1.18 1.68 16 2 O -0.30 -5.81 10.47 -90.12 -0.94 -6.75 16 3 C 0.35 7.87 7.49 84.90 0.64 8.50 16 4 C -0.18 -3.24 9.96 22.22 0.22 -3.02 16 5 C 0.01 0.32 10.16 22.39 0.23 0.54 16 6 C -0.05 -1.57 7.24 39.50 0.29 -1.29 16 7 N -0.48 -16.27 11.28 -179.72 -2.03 -18.29 16 8 C 0.31 9.63 7.35 137.87 1.01 10.64 16 9 C -0.01 -0.27 6.57 71.24 0.47 0.19 16 10 S -0.29 -12.12 21.64 -56.49 -1.22 -13.34 16 11 C 0.09 4.75 5.70 71.24 0.41 5.16 16 12 C -0.54 -30.08 9.13 25.60 0.23 -29.85 16 13 H 0.06 3.36 7.71 -2.91 -0.02 3.34 16 14 C 0.02 1.04 5.46 84.66 0.46 1.50 16 15 N -0.92 -52.83 13.29 21.45 0.28 -52.55 16 16 Si 0.97 43.01 29.54 68.60 2.03 45.04 16 17 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 18 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 19 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 20 N -0.57 -15.68 6.22 -183.87 -1.14 -16.83 16 21 H 0.44 9.76 8.96 -92.70 -0.83 8.93 16 22 C 0.26 7.69 8.45 133.78 1.13 8.82 16 23 N -0.56 -14.88 9.22 -305.94 -2.82 -17.70 16 24 H 0.05 0.84 8.10 -2.39 -0.02 0.82 16 25 H 0.05 0.84 8.10 -2.39 -0.02 0.82 16 26 H 0.13 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.19 1.98 8.06 -2.91 -0.02 1.96 16 28 H 0.18 2.76 8.06 -2.91 -0.02 2.74 16 29 H 0.12 3.23 8.14 -2.39 -0.02 3.21 16 30 H 0.12 3.68 8.14 -2.39 -0.02 3.66 16 31 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.02 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.27 14.54 8.31 -92.71 -0.77 13.77 16 Total: -1.00 -68.22 308.85 0.73 -67.49 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: 0.31 Total: 10.05 kcal Atomic # 6 Polarization: -3.38 SS G_CDS: 6.26 Total: 2.88 kcal Atomic # 7 Polarization: -99.66 SS G_CDS: -5.71 Total: -105.37 kcal Atomic # 8 Polarization: -5.81 SS G_CDS: -0.94 Total: -6.75 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Atomic # 16 Polarization: -12.12 SS G_CDS: -1.22 Total: -13.34 kcal Total: -68.22 0.73 -67.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413012638.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.857 kcal (2) G-P(sol) polarization free energy of solvation -68.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds