Wall clock time and date at job start Fri Apr 10 2020 14:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.81405 * 103.00133 * 2 1 4 4 H 1.09000 * 110.77688 * 56.78304 * 3 2 1 5 5 C 1.55151 * 110.71693 * 293.54340 * 3 2 1 6 6 C 1.54917 * 101.58025 * 206.13542 * 5 3 2 7 7 N 1.47421 * 104.83002 * 37.01304 * 6 5 3 8 8 S 1.65599 * 125.64600 * 155.91319 * 7 6 5 9 9 O 1.42109 * 104.27451 * 206.03813 * 8 7 6 10 10 O 1.42094 * 104.27731 * 333.89486 * 8 7 6 11 11 C 1.81401 * 104.45229 * 89.96955 * 8 7 6 12 12 C 1.52999 * 109.47142 * 179.97438 * 11 8 7 13 13 C 1.50697 * 109.47454 * 179.97438 * 12 11 8 14 14 H 1.08005 * 119.99399 * 0.02562 * 13 12 11 15 15 C 1.37873 * 120.00443 * 179.97438 * 13 12 11 16 16 N 1.31518 * 120.00194 * 179.97438 * 15 13 12 17 17 Si 1.86801 * 120.00038 * 0.02562 * 15 13 12 18 18 H 1.48499 * 109.47084 * 89.99210 * 17 15 13 19 19 H 1.48496 * 109.47272 * 209.99707 * 17 15 13 20 20 H 1.48505 * 109.46798 * 329.99660 * 17 15 13 21 21 C 1.47021 * 108.70450 * 335.86832 * 7 6 5 22 22 H 1.08997 * 109.47157 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47283 * 300.00906 * 1 2 3 24 24 H 1.09006 * 109.46489 * 60.00091 * 1 2 3 25 25 H 1.08998 * 111.00631 * 88.06379 * 5 3 2 26 26 H 1.09004 * 111.00792 * 324.20778 * 5 3 2 27 27 H 1.09002 * 110.36419 * 155.85111 * 6 5 3 28 28 H 1.09001 * 110.36569 * 278.17123 * 6 5 3 29 29 H 1.08994 * 109.46876 * 299.99797 * 11 8 7 30 30 H 1.09002 * 109.47226 * 60.00091 * 11 8 7 31 31 H 1.09002 * 109.47257 * 300.00052 * 12 11 8 32 32 H 1.08995 * 109.47310 * 59.99480 * 12 11 8 33 33 H 0.96994 * 119.99999 * 180.02562 * 16 15 13 34 34 H 1.08996 * 109.88310 * 120.48076 * 21 7 6 35 35 H 1.09000 * 109.88323 * 241.64470 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7651 2.2699 0.8526 5 6 1.7807 2.4327 -1.3304 6 6 2.7637 3.6266 -1.4222 7 7 4.0379 3.1078 -0.8926 8 16 5.5428 3.7034 -1.2434 9 8 6.4116 2.5953 -1.0517 10 8 5.3926 4.3039 -2.5224 11 6 5.8356 4.9683 0.0234 12 6 7.2118 5.6001 -0.1952 13 6 7.4549 6.6514 0.8568 14 1 6.7031 6.8489 1.6066 15 6 8.6374 7.3603 0.8627 16 7 8.8493 8.2782 1.7805 17 14 9.9380 7.0182 -0.4338 18 1 9.7069 7.8946 -1.6101 19 1 11.2838 7.2922 0.1309 20 1 9.8571 5.5958 -0.8527 21 6 3.7514 1.9748 -0.0006 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3632 0.5139 -0.8901 25 1 0.7492 2.7798 -1.2704 26 1 1.9139 1.7515 -2.1709 27 1 2.8836 3.9403 -2.4592 28 1 2.4094 4.4575 -0.8121 29 1 5.0669 5.7378 -0.0470 30 1 5.8001 4.5086 1.0111 31 1 7.9804 4.8303 -0.1245 32 1 7.2479 6.0597 -1.1828 33 1 9.6810 8.7772 1.7844 34 1 4.2470 1.0772 -0.3704 35 1 4.0951 2.2014 1.0087 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451731724.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:04:32 Heat of formation + Delta-G solvation = -74.188099 kcal Electronic energy + Delta-G solvation = -17942.712983 eV Core-core repulsion = 15001.096759 eV Total energy + Delta-G solvation = -2941.616224 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 279.075 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.54731 -36.77392 -35.60689 -33.96691 -31.50075 -31.31501 -29.38255 -29.05921 -25.98938 -22.89125 -21.74842 -21.14272 -18.78683 -17.85969 -17.02157 -16.95479 -16.13930 -15.61684 -15.21949 -14.41892 -14.24888 -14.17417 -14.02734 -13.62660 -13.45321 -13.20663 -12.80311 -12.78367 -12.37739 -11.92129 -11.83852 -11.73592 -11.55263 -11.45832 -11.27494 -11.22251 -11.20591 -10.46247 -10.18152 -10.17317 -9.76498 -9.44940 -8.91264 -8.67707 -7.99857 -6.18029 -4.19548 0.53539 1.31792 2.20382 2.89568 3.25842 3.33280 3.37533 3.97437 4.13337 4.22037 4.34742 4.53427 4.71320 4.78038 4.80435 5.00655 5.06860 5.13713 5.30882 5.31986 5.39276 5.48621 5.50172 5.58034 5.62096 5.81454 5.97701 6.25715 6.29847 6.79343 6.91846 7.52966 8.34881 8.82737 9.41520 10.94338 Molecular weight = 279.07amu Principal moments of inertia in cm(-1) A = 0.038381 B = 0.003994 C = 0.003905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.353416 B = 7009.384799 C = 7168.992903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 S -0.242 6.242 3 C -0.070 4.070 4 H 0.103 0.897 5 C -0.123 4.123 6 C 0.117 3.883 7 N -1.016 6.016 8 S 2.604 3.396 9 O -0.958 6.958 10 O -0.959 6.959 11 C -0.581 4.581 12 C -0.007 4.007 13 C -0.520 4.520 14 H 0.078 0.922 15 C 0.072 3.928 16 N -0.896 5.896 17 Si 0.870 3.130 18 H -0.271 1.271 19 H -0.282 1.282 20 H -0.262 1.262 21 C 0.144 3.856 22 H 0.100 0.900 23 H 0.077 0.923 24 H 0.077 0.923 25 H 0.083 0.917 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.070 0.930 29 H 0.125 0.875 30 H 0.125 0.875 31 H 0.033 0.967 32 H 0.028 0.972 33 H 0.267 0.733 34 H 0.081 0.919 35 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.117 -13.543 -3.934 22.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.292 4.292 2 S -0.015 6.015 3 C -0.200 4.200 4 H 0.121 0.879 5 C -0.164 4.164 6 C -0.010 4.010 7 N -0.853 5.853 8 S 2.703 3.297 9 O -0.949 6.949 10 O -0.950 6.950 11 C -0.714 4.714 12 C -0.047 4.047 13 C -0.559 4.559 14 H 0.096 0.904 15 C -0.131 4.131 16 N -0.533 5.533 17 Si 0.696 3.304 18 H -0.196 1.196 19 H -0.207 1.207 20 H -0.186 1.186 21 C 0.018 3.982 22 H 0.119 0.881 23 H 0.096 0.904 24 H 0.096 0.904 25 H 0.102 0.898 26 H 0.108 0.892 27 H 0.107 0.893 28 H 0.088 0.912 29 H 0.144 0.856 30 H 0.144 0.856 31 H 0.051 0.949 32 H 0.046 0.954 33 H 0.077 0.923 34 H 0.100 0.900 35 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -16.702 -14.600 -4.606 22.656 hybrid contribution -0.409 1.361 0.120 1.426 sum -17.111 -13.239 -4.486 22.094 Atomic orbital electron populations 1.23389 0.94287 1.06484 1.05025 1.87003 1.07177 1.09436 1.97873 1.24281 0.99567 0.94415 1.01772 0.87872 1.23168 0.99295 0.97558 0.96379 1.22014 0.82614 0.95990 1.00344 1.58873 1.22370 1.43450 1.60644 1.05371 0.71500 0.76112 0.76713 1.93553 1.63525 1.50550 1.87265 1.93540 1.84583 1.79234 1.37644 1.30334 1.09315 1.15393 1.16379 1.19420 0.88476 0.97556 0.99224 1.20838 1.03815 1.18222 1.13009 0.90428 1.24986 0.98027 0.94468 0.95618 1.69879 1.25930 1.23468 1.34063 0.86920 0.81393 0.79880 0.82244 1.19645 1.20712 1.18590 1.21346 0.92440 0.89985 0.94472 0.88095 0.90436 0.90359 0.89800 0.89228 0.89272 0.91189 0.85649 0.85633 0.94885 0.95354 0.92349 0.90041 0.90365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.71 10.63 101.05 1.07 0.36 16 2 S -0.24 -2.25 21.66 -107.50 -2.33 -4.57 16 3 C -0.07 -0.63 3.47 -24.90 -0.09 -0.71 16 4 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 5 C -0.12 -1.00 6.42 -24.58 -0.16 -1.16 16 6 C 0.12 1.20 7.07 -2.53 -0.02 1.19 16 7 N -1.02 -13.34 3.62 -111.42 -0.40 -13.75 16 8 S 2.60 44.90 5.65 -107.50 -0.61 44.30 16 9 O -0.96 -19.16 17.60 -57.54 -1.01 -20.18 16 10 O -0.96 -18.74 17.28 -57.54 -0.99 -19.74 16 11 C -0.58 -10.62 6.12 37.16 0.23 -10.39 16 12 C -0.01 -0.17 4.05 -27.88 -0.11 -0.29 16 13 C -0.52 -14.52 9.66 -34.44 -0.33 -14.85 16 14 H 0.08 2.27 7.99 -52.48 -0.42 1.85 16 15 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 16 N -0.90 -27.05 13.96 55.43 0.77 -26.28 16 17 Si 0.87 21.49 27.47 -169.99 -4.67 16.82 16 18 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 19 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.26 -6.26 6.54 56.52 0.37 -5.89 16 21 C 0.14 1.67 6.51 -3.06 -0.02 1.65 16 22 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 24 H 0.08 0.39 8.14 -51.92 -0.42 -0.03 16 25 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.09 0.78 8.04 -51.93 -0.42 0.36 16 27 H 0.09 0.95 7.67 -51.93 -0.40 0.55 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.13 2.07 8.14 -51.93 -0.42 1.65 16 30 H 0.13 2.09 8.14 -51.92 -0.42 1.67 16 31 H 0.03 0.78 7.20 -51.93 -0.37 0.41 16 32 H 0.03 0.66 7.57 -51.93 -0.39 0.27 16 33 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 34 H 0.08 1.04 7.78 -51.93 -0.40 0.64 16 35 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 315.22 15.07 4.75 4.75 Total: -1.00 -34.36 315.22 -9.39 -43.75 By element: Atomic # 1 Polarization: 2.51 SS G_CDS: -5.38 Total: -2.87 kcal Atomic # 6 Polarization: -22.71 SS G_CDS: 0.48 Total: -22.24 kcal Atomic # 7 Polarization: -40.40 SS G_CDS: 0.37 Total: -40.03 kcal Atomic # 8 Polarization: -37.91 SS G_CDS: -2.01 Total: -39.91 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.67 Total: 16.82 kcal Atomic # 16 Polarization: 42.66 SS G_CDS: -2.94 Total: 39.72 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -34.36 -9.39 -43.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451731724.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.440 kcal (2) G-P(sol) polarization free energy of solvation -34.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds