Wall clock time and date at job start Fri Apr 10 2020 14:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.81405 * 103.00133 * 2 1 4 4 H 1.09000 * 110.77688 * 56.78304 * 3 2 1 5 5 C 1.55151 * 110.71693 * 293.54340 * 3 2 1 6 6 C 1.54917 * 101.58025 * 206.13542 * 5 3 2 7 7 N 1.47421 * 104.83002 * 37.01304 * 6 5 3 8 8 S 1.65599 * 125.64600 * 155.91319 * 7 6 5 9 9 O 1.42109 * 104.27451 * 206.03813 * 8 7 6 10 10 O 1.42094 * 104.27731 * 333.89486 * 8 7 6 11 11 C 1.81401 * 104.45229 * 89.96955 * 8 7 6 12 12 C 1.52999 * 109.47142 * 179.97438 * 11 8 7 13 13 C 1.50697 * 109.47454 * 179.97438 * 12 11 8 14 14 H 1.08005 * 119.99399 * 0.02562 * 13 12 11 15 15 C 1.37873 * 120.00443 * 179.97438 * 13 12 11 16 16 N 1.31518 * 120.00194 * 179.97438 * 15 13 12 17 17 Si 1.86801 * 120.00038 * 0.02562 * 15 13 12 18 18 H 1.48499 * 109.47084 * 89.99210 * 17 15 13 19 19 H 1.48496 * 109.47272 * 209.99707 * 17 15 13 20 20 H 1.48505 * 109.46798 * 329.99660 * 17 15 13 21 21 C 1.47021 * 108.70450 * 335.86832 * 7 6 5 22 22 H 1.08997 * 109.47157 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47283 * 300.00906 * 1 2 3 24 24 H 1.09006 * 109.46489 * 60.00091 * 1 2 3 25 25 H 1.08998 * 111.00631 * 88.06379 * 5 3 2 26 26 H 1.09004 * 111.00792 * 324.20778 * 5 3 2 27 27 H 1.09002 * 110.36419 * 155.85111 * 6 5 3 28 28 H 1.09001 * 110.36569 * 278.17123 * 6 5 3 29 29 H 1.08994 * 109.46876 * 299.99797 * 11 8 7 30 30 H 1.09002 * 109.47226 * 60.00091 * 11 8 7 31 31 H 1.09002 * 109.47257 * 300.00052 * 12 11 8 32 32 H 1.08995 * 109.47310 * 59.99480 * 12 11 8 33 33 H 0.96994 * 119.99999 * 180.02562 * 16 15 13 34 34 H 1.08996 * 109.88310 * 120.48076 * 21 7 6 35 35 H 1.09000 * 109.88323 * 241.64470 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7651 2.2699 0.8526 5 6 1.7807 2.4327 -1.3304 6 6 2.7637 3.6266 -1.4222 7 7 4.0379 3.1078 -0.8926 8 16 5.5428 3.7034 -1.2434 9 8 6.4116 2.5953 -1.0517 10 8 5.3926 4.3039 -2.5224 11 6 5.8356 4.9683 0.0234 12 6 7.2118 5.6001 -0.1952 13 6 7.4549 6.6514 0.8568 14 1 6.7031 6.8489 1.6066 15 6 8.6374 7.3603 0.8627 16 7 8.8493 8.2782 1.7805 17 14 9.9380 7.0182 -0.4338 18 1 9.7069 7.8946 -1.6101 19 1 11.2838 7.2922 0.1309 20 1 9.8571 5.5958 -0.8527 21 6 3.7514 1.9748 -0.0006 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3632 0.5139 -0.8901 25 1 0.7492 2.7798 -1.2704 26 1 1.9139 1.7515 -2.1709 27 1 2.8836 3.9403 -2.4592 28 1 2.4094 4.4575 -0.8121 29 1 5.0669 5.7378 -0.0470 30 1 5.8001 4.5086 1.0111 31 1 7.9804 4.8303 -0.1245 32 1 7.2479 6.0597 -1.1828 33 1 9.6810 8.7772 1.7844 34 1 4.2470 1.0772 -0.3704 35 1 4.0951 2.2014 1.0087 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451731724.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:04:30 Heat of formation + Delta-G solvation = -98.941140 kcal Electronic energy + Delta-G solvation = -17943.786355 eV Core-core repulsion = 15001.096759 eV Total energy + Delta-G solvation = -2942.689597 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 279.075 amu Computer time = 2.12 seconds Orbital eigenvalues (eV) -39.40396 -38.25705 -37.09674 -35.91381 -33.49192 -32.18423 -30.14348 -29.56265 -27.90209 -23.93780 -22.93227 -22.47653 -20.04143 -19.43212 -18.63756 -17.85254 -17.19713 -17.05146 -16.40627 -16.38148 -15.42057 -15.06506 -14.82233 -14.80026 -14.71684 -14.09325 -13.94939 -13.81874 -13.58605 -13.30920 -13.22290 -13.09016 -13.02703 -12.98556 -12.66581 -12.26354 -12.20949 -11.98945 -11.91238 -11.72786 -11.32361 -10.85578 -10.79979 -10.00286 -8.68230 -8.37868 -6.43843 -0.84073 0.66971 1.31377 1.33428 1.43507 1.61521 1.70909 2.28642 2.76310 2.95923 2.98678 3.37810 3.53056 3.87795 4.00946 4.06325 4.25293 4.32279 4.41900 4.43097 4.52366 4.54649 4.72916 4.76458 4.83140 4.97123 4.99446 5.03558 5.09242 5.16278 5.36233 5.45691 6.15146 6.62110 7.20728 8.77663 Molecular weight = 279.07amu Principal moments of inertia in cm(-1) A = 0.038381 B = 0.003994 C = 0.003905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.353416 B = 7009.384799 C = 7168.992903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 S -0.297 6.297 3 C -0.056 4.056 4 H 0.124 0.876 5 C -0.114 4.114 6 C 0.104 3.896 7 N -1.013 6.013 8 S 2.633 3.367 9 O -0.989 6.989 10 O -0.983 6.983 11 C -0.584 4.584 12 C -0.018 4.018 13 C -0.528 4.528 14 H 0.050 0.950 15 C 0.014 3.986 16 N -0.939 5.939 17 Si 0.925 3.075 18 H -0.259 1.259 19 H -0.274 1.274 20 H -0.251 1.251 21 C 0.133 3.867 22 H 0.108 0.892 23 H 0.089 0.911 24 H 0.090 0.910 25 H 0.117 0.883 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.093 0.907 29 H 0.142 0.858 30 H 0.138 0.862 31 H 0.031 0.969 32 H 0.032 0.968 33 H 0.270 0.730 34 H 0.064 0.936 35 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.952 -14.324 -4.688 25.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.277 4.277 2 S -0.071 6.071 3 C -0.187 4.187 4 H 0.142 0.858 5 C -0.154 4.154 6 C -0.021 4.021 7 N -0.852 5.852 8 S 2.732 3.268 9 O -0.979 6.979 10 O -0.973 6.973 11 C -0.716 4.716 12 C -0.057 4.057 13 C -0.567 4.567 14 H 0.068 0.932 15 C -0.185 4.185 16 N -0.579 5.579 17 Si 0.747 3.253 18 H -0.184 1.184 19 H -0.199 1.199 20 H -0.174 1.174 21 C 0.007 3.993 22 H 0.127 0.873 23 H 0.108 0.892 24 H 0.109 0.891 25 H 0.136 0.864 26 H 0.100 0.900 27 H 0.102 0.898 28 H 0.112 0.888 29 H 0.160 0.840 30 H 0.157 0.843 31 H 0.050 0.950 32 H 0.050 0.950 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -18.538 -15.375 -5.360 24.673 hybrid contribution 0.013 1.559 0.413 1.613 sum -18.525 -13.816 -4.947 23.633 Atomic orbital electron populations 1.23443 0.90526 1.07452 1.06256 1.87248 1.11342 1.10455 1.98031 1.24209 0.97378 0.94030 1.03033 0.85840 1.23172 1.00415 0.96261 0.95588 1.22378 0.81580 0.97699 1.00454 1.58479 1.22052 1.43608 1.61073 1.04177 0.71939 0.75068 0.75648 1.93511 1.65551 1.51382 1.87464 1.93504 1.85344 1.79704 1.38758 1.30311 1.06777 1.16490 1.18025 1.19383 0.91702 0.96678 0.97935 1.21162 1.03128 1.19083 1.13302 0.93177 1.25868 1.00473 0.94354 0.97766 1.70003 1.26919 1.24877 1.36116 0.86027 0.78847 0.80481 0.79911 1.18395 1.19857 1.17421 1.21556 0.94738 0.88631 0.94399 0.87296 0.89195 0.89066 0.86442 0.89979 0.89834 0.88838 0.83970 0.84330 0.95047 0.94958 0.92070 0.91739 0.89390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.92 10.63 113.37 1.21 0.28 16 2 S -0.30 -5.01 21.66 -56.49 -1.22 -6.23 16 3 C -0.06 -0.86 3.47 31.78 0.11 -0.75 16 4 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 5 C -0.11 -1.49 6.42 31.99 0.21 -1.28 16 6 C 0.10 1.87 7.07 86.86 0.61 2.48 16 7 N -1.01 -24.93 3.62 -506.42 -1.83 -26.76 16 8 S 2.63 88.35 5.65 -56.49 -0.32 88.03 16 9 O -0.99 -39.17 17.60 -127.65 -2.25 -41.42 16 10 O -0.98 -37.43 17.28 -127.65 -2.21 -39.64 16 11 C -0.58 -20.81 6.12 71.98 0.44 -20.37 16 12 C -0.02 -0.84 4.05 29.85 0.12 -0.72 16 13 C -0.53 -29.81 9.66 25.60 0.25 -29.57 16 14 H 0.05 3.01 7.99 -2.91 -0.02 2.99 16 15 C 0.01 0.81 5.47 84.65 0.46 1.28 16 16 N -0.94 -57.73 13.96 21.45 0.30 -57.43 16 17 Si 0.92 43.91 27.47 68.60 1.88 45.80 16 18 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 19 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 20 H -0.25 -11.35 6.54 99.48 0.65 -10.70 16 21 C 0.13 2.89 6.51 86.73 0.56 3.45 16 22 H 0.11 0.77 8.14 -2.39 -0.02 0.76 16 23 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 24 H 0.09 0.56 8.14 -2.39 -0.02 0.55 16 25 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.08 1.23 8.04 -2.38 -0.02 1.21 16 27 H 0.08 1.61 7.67 -2.39 -0.02 1.60 16 28 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.14 4.51 8.14 -2.39 -0.02 4.49 16 30 H 0.14 4.50 8.14 -2.39 -0.02 4.48 16 31 H 0.03 1.47 7.20 -2.39 -0.02 1.46 16 32 H 0.03 1.48 7.57 -2.39 -0.02 1.46 16 33 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 34 H 0.06 1.63 7.78 -2.39 -0.02 1.61 16 35 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -74.81 315.22 -0.67 -75.48 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: 1.00 Total: 7.35 kcal Atomic # 6 Polarization: -49.16 SS G_CDS: 3.97 Total: -45.19 kcal Atomic # 7 Polarization: -82.65 SS G_CDS: -1.53 Total: -84.19 kcal Atomic # 8 Polarization: -76.60 SS G_CDS: -4.45 Total: -81.05 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 1.88 Total: 45.80 kcal Atomic # 16 Polarization: 83.34 SS G_CDS: -1.54 Total: 81.80 kcal Total: -74.81 -0.67 -75.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451731724.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.457 kcal (2) G-P(sol) polarization free energy of solvation -74.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.12 seconds