Wall clock time and date at job start Fri Apr 10 2020 14:04:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 C 1.81402 * 102.99934 * 2 1 4 4 H 1.09008 * 110.88420 * 308.88223 * 3 2 1 5 5 C 1.55154 * 111.03832 * 72.78472 * 3 2 1 6 6 C 1.54325 * 102.94303 * 153.58997 * 5 3 2 7 7 N 1.47290 * 107.30599 * 337.81911 * 6 5 3 8 8 S 1.65600 * 125.79191 * 178.92104 * 7 6 5 9 9 O 1.42100 * 104.27608 * 26.07547 * 8 7 6 10 10 O 1.42107 * 104.27253 * 153.92822 * 8 7 6 11 11 C 1.81391 * 104.45184 * 270.00009 * 8 7 6 12 12 C 1.52997 * 109.47209 * 180.02562 * 11 8 7 13 13 C 1.50700 * 109.47471 * 180.02562 * 12 11 8 14 14 H 1.08006 * 119.99596 * 359.97438 * 13 12 11 15 15 C 1.37874 * 120.00403 * 179.97438 * 13 12 11 16 16 N 1.31518 * 119.99851 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00197 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.47094 * 90.00241 * 17 15 13 19 19 H 1.48495 * 109.47138 * 210.00284 * 17 15 13 20 20 H 1.48495 * 109.47010 * 330.00185 * 17 15 13 21 21 C 1.47425 * 108.55742 * 358.92448 * 7 6 5 22 22 H 1.09007 * 109.47453 * 300.00264 * 1 2 3 23 23 H 1.09001 * 109.47440 * 59.99953 * 1 2 3 24 24 H 1.08998 * 109.47234 * 180.02562 * 1 2 3 25 25 H 1.09002 * 110.72290 * 271.95684 * 5 3 2 26 26 H 1.08997 * 110.72022 * 35.22455 * 5 3 2 27 27 H 1.09004 * 109.88239 * 97.22707 * 6 5 3 28 28 H 1.08995 * 109.88239 * 218.23629 * 6 5 3 29 29 H 1.08998 * 109.47228 * 300.00401 * 11 8 7 30 30 H 1.09003 * 109.47110 * 60.00464 * 11 8 7 31 31 H 1.09005 * 109.46802 * 300.00055 * 12 11 8 32 32 H 1.08991 * 109.47516 * 59.99858 * 12 11 8 33 33 H 0.97001 * 119.99865 * 180.02562 * 16 15 13 34 34 H 1.09002 * 110.36696 * 265.26054 * 21 7 6 35 35 H 1.08995 * 110.36608 * 143.04891 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.6865 2.2900 -0.7928 5 6 1.9297 2.4067 1.3832 6 6 2.9095 3.5982 1.4275 7 7 3.9979 3.3059 0.4791 8 16 5.2844 4.2942 0.1469 9 8 5.4391 5.0756 1.3236 10 8 6.3071 3.4057 -0.2823 11 6 4.7178 5.3264 -1.2329 12 6 5.8321 6.2937 -1.6373 13 6 5.3611 7.1518 -2.7832 14 1 4.3666 7.0200 -3.1832 15 6 6.1998 8.1049 -3.3208 16 7 7.4110 8.2650 -2.8340 17 14 5.6162 9.1680 -4.7417 18 1 4.9703 10.3947 -4.2093 19 1 6.7776 9.5467 -5.5861 20 1 4.6369 8.4078 -5.5590 21 6 3.7506 1.9845 -0.1261 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 0.8978 2.7536 1.4375 26 1 2.1432 1.7017 2.1866 27 1 2.3952 4.5122 1.1305 28 1 3.3120 3.7099 2.4342 29 1 4.4629 4.6912 -2.0811 30 1 3.8384 5.8927 -0.9258 31 1 6.0873 6.9290 -0.7891 32 1 6.7111 5.7273 -1.9445 33 1 8.0009 8.9358 -3.2120 34 1 4.2899 1.2103 0.4197 35 1 4.0484 1.9858 -1.1746 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451731725.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:04:39 Heat of formation + Delta-G solvation = -78.451066 kcal Electronic energy + Delta-G solvation = -17912.991632 eV Core-core repulsion = 14971.190552 eV Total energy + Delta-G solvation = -2941.801080 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 279.075 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -38.47454 -36.63961 -35.47162 -33.91150 -31.22081 -31.17615 -29.29981 -29.08901 -25.62524 -22.89121 -21.66885 -21.46524 -18.70719 -17.68332 -17.00888 -16.58159 -15.98419 -15.48043 -15.13575 -14.58547 -14.28267 -14.10698 -13.73605 -13.63764 -13.37571 -13.30770 -12.81357 -12.52934 -12.20936 -11.78097 -11.70852 -11.60970 -11.42881 -11.33458 -11.23259 -11.09618 -10.98521 -10.44838 -10.40100 -10.18245 -9.80025 -9.37148 -8.81885 -8.52070 -7.98297 -6.14097 -4.19930 0.65306 1.33986 2.22478 3.02982 3.24751 3.31046 3.33728 4.02501 4.22871 4.32379 4.39390 4.59445 4.74414 4.80086 4.82144 5.04100 5.10203 5.21042 5.32057 5.35251 5.45345 5.57509 5.62440 5.65050 5.73007 5.84633 6.06540 6.36457 6.45787 7.27612 7.33639 7.78601 8.15376 8.83320 9.44915 10.96930 Molecular weight = 279.07amu Principal moments of inertia in cm(-1) A = 0.025444 B = 0.004159 C = 0.003833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.201929 B = 6731.169933 C = 7303.617040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.240 6.240 3 C -0.076 4.076 4 H 0.103 0.897 5 C -0.121 4.121 6 C 0.122 3.878 7 N -1.018 6.018 8 S 2.605 3.395 9 O -0.959 6.959 10 O -0.959 6.959 11 C -0.588 4.588 12 C 0.027 3.973 13 C -0.521 4.521 14 H 0.061 0.939 15 C 0.058 3.942 16 N -0.890 5.890 17 Si 0.900 3.100 18 H -0.279 1.279 19 H -0.284 1.284 20 H -0.273 1.273 21 C 0.148 3.852 22 H 0.077 0.923 23 H 0.077 0.923 24 H 0.101 0.899 25 H 0.081 0.919 26 H 0.089 0.911 27 H 0.068 0.932 28 H 0.076 0.924 29 H 0.119 0.881 30 H 0.119 0.881 31 H 0.034 0.966 32 H 0.034 0.966 33 H 0.265 0.735 34 H 0.078 0.922 35 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.983 -14.053 6.771 21.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S -0.013 6.013 3 C -0.206 4.206 4 H 0.122 0.878 5 C -0.162 4.162 6 C -0.005 4.005 7 N -0.855 5.855 8 S 2.705 3.295 9 O -0.950 6.950 10 O -0.949 6.949 11 C -0.721 4.721 12 C -0.012 4.012 13 C -0.560 4.560 14 H 0.079 0.921 15 C -0.145 4.145 16 N -0.528 5.528 17 Si 0.728 3.272 18 H -0.205 1.205 19 H -0.210 1.210 20 H -0.198 1.198 21 C 0.021 3.979 22 H 0.096 0.904 23 H 0.096 0.904 24 H 0.119 0.881 25 H 0.100 0.900 26 H 0.107 0.893 27 H 0.087 0.913 28 H 0.094 0.906 29 H 0.137 0.863 30 H 0.137 0.863 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.075 0.925 34 H 0.096 0.904 35 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -13.241 -14.842 7.221 21.161 hybrid contribution -1.681 1.845 -1.279 2.805 sum -14.923 -12.997 5.942 20.662 Atomic orbital electron populations 1.23389 0.94182 1.06479 1.05079 1.86891 1.07250 1.09346 1.97848 1.24473 1.00517 0.94282 1.01319 0.87835 1.23021 0.99696 0.97500 0.95934 1.21697 0.87372 0.97654 0.93730 1.59064 1.42310 1.29710 1.54385 1.05395 0.72851 0.74302 0.76969 1.93539 1.84432 1.71152 1.45847 1.93550 1.53676 1.63570 1.84132 1.30487 1.11844 1.13383 1.16429 1.18977 0.90767 0.92896 0.98530 1.20991 1.00406 1.18348 1.16272 0.92070 1.25071 0.94852 0.97232 0.97318 1.69956 1.06988 1.34121 1.41733 0.86461 0.78346 0.80528 0.81896 1.20458 1.20963 1.19773 1.21581 0.91812 0.85116 0.99344 0.90375 0.90391 0.88079 0.89996 0.89272 0.91338 0.90581 0.86264 0.86276 0.94810 0.94773 0.92493 0.90428 0.89596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.74 10.76 101.05 1.09 0.35 16 2 S -0.24 -2.22 21.82 -107.50 -2.35 -4.57 16 3 C -0.08 -0.71 3.54 -24.58 -0.09 -0.79 16 4 H 0.10 0.89 8.14 -51.92 -0.42 0.47 16 5 C -0.12 -1.01 6.43 -24.90 -0.16 -1.17 16 6 C 0.12 1.34 6.92 -2.92 -0.02 1.32 16 7 N -1.02 -14.01 3.63 -111.22 -0.40 -14.42 16 8 S 2.61 47.50 5.65 -107.50 -0.61 46.90 16 9 O -0.96 -20.03 17.61 -57.54 -1.01 -21.04 16 10 O -0.96 -20.19 17.61 -57.54 -1.01 -21.20 16 11 C -0.59 -11.24 6.12 37.16 0.23 -11.01 16 12 C 0.03 0.70 4.98 -27.88 -0.14 0.56 16 13 C -0.52 -14.38 9.11 -34.44 -0.31 -14.69 16 14 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 16 N -0.89 -26.46 13.29 55.43 0.74 -25.72 16 17 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 21 C 0.15 1.78 6.36 -2.53 -0.02 1.77 16 22 H 0.08 0.40 8.14 -51.92 -0.42 -0.02 16 23 H 0.08 0.43 8.14 -51.92 -0.42 0.01 16 24 H 0.10 0.51 8.14 -51.92 -0.42 0.09 16 25 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.09 0.72 8.03 -51.93 -0.42 0.31 16 27 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.12 2.05 8.14 -51.93 -0.42 1.63 16 30 H 0.12 2.04 8.14 -51.92 -0.42 1.61 16 31 H 0.03 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 34 H 0.08 0.95 8.03 -51.93 -0.42 0.53 16 35 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 LS Contribution 319.96 15.07 4.82 4.82 Total: -1.00 -34.31 319.96 -9.81 -44.12 By element: Atomic # 1 Polarization: 2.57 SS G_CDS: -5.45 Total: -2.88 kcal Atomic # 6 Polarization: -22.61 SS G_CDS: 0.48 Total: -22.13 kcal Atomic # 7 Polarization: -40.47 SS G_CDS: 0.33 Total: -40.14 kcal Atomic # 8 Polarization: -40.22 SS G_CDS: -2.03 Total: -42.24 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: 45.28 SS G_CDS: -2.95 Total: 42.33 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -34.31 -9.81 -44.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451731725.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.328 kcal (2) G-P(sol) polarization free energy of solvation -34.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds