Wall clock time and date at job start Fri Apr 10 2020 14:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 C 1.81402 * 102.99934 * 2 1 4 4 H 1.09008 * 110.88420 * 308.88223 * 3 2 1 5 5 C 1.55154 * 111.03832 * 72.78472 * 3 2 1 6 6 C 1.54325 * 102.94303 * 153.58997 * 5 3 2 7 7 N 1.47290 * 107.30599 * 337.81911 * 6 5 3 8 8 S 1.65600 * 125.79191 * 178.92104 * 7 6 5 9 9 O 1.42100 * 104.27608 * 26.07547 * 8 7 6 10 10 O 1.42107 * 104.27253 * 153.92822 * 8 7 6 11 11 C 1.81391 * 104.45184 * 270.00009 * 8 7 6 12 12 C 1.52997 * 109.47209 * 180.02562 * 11 8 7 13 13 C 1.50700 * 109.47471 * 180.02562 * 12 11 8 14 14 H 1.08006 * 119.99596 * 359.97438 * 13 12 11 15 15 C 1.37874 * 120.00403 * 179.97438 * 13 12 11 16 16 N 1.31518 * 119.99851 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00197 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.47094 * 90.00241 * 17 15 13 19 19 H 1.48495 * 109.47138 * 210.00284 * 17 15 13 20 20 H 1.48495 * 109.47010 * 330.00185 * 17 15 13 21 21 C 1.47425 * 108.55742 * 358.92448 * 7 6 5 22 22 H 1.09007 * 109.47453 * 300.00264 * 1 2 3 23 23 H 1.09001 * 109.47440 * 59.99953 * 1 2 3 24 24 H 1.08998 * 109.47234 * 180.02562 * 1 2 3 25 25 H 1.09002 * 110.72290 * 271.95684 * 5 3 2 26 26 H 1.08997 * 110.72022 * 35.22455 * 5 3 2 27 27 H 1.09004 * 109.88239 * 97.22707 * 6 5 3 28 28 H 1.08995 * 109.88239 * 218.23629 * 6 5 3 29 29 H 1.08998 * 109.47228 * 300.00401 * 11 8 7 30 30 H 1.09003 * 109.47110 * 60.00464 * 11 8 7 31 31 H 1.09005 * 109.46802 * 300.00055 * 12 11 8 32 32 H 1.08991 * 109.47516 * 59.99858 * 12 11 8 33 33 H 0.97001 * 119.99865 * 180.02562 * 16 15 13 34 34 H 1.09002 * 110.36696 * 265.26054 * 21 7 6 35 35 H 1.08995 * 110.36608 * 143.04891 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.6865 2.2900 -0.7928 5 6 1.9297 2.4067 1.3832 6 6 2.9095 3.5982 1.4275 7 7 3.9979 3.3059 0.4791 8 16 5.2844 4.2942 0.1469 9 8 5.4391 5.0756 1.3236 10 8 6.3071 3.4057 -0.2823 11 6 4.7178 5.3264 -1.2329 12 6 5.8321 6.2937 -1.6373 13 6 5.3611 7.1518 -2.7832 14 1 4.3666 7.0200 -3.1832 15 6 6.1998 8.1049 -3.3208 16 7 7.4110 8.2650 -2.8340 17 14 5.6162 9.1680 -4.7417 18 1 4.9703 10.3947 -4.2093 19 1 6.7776 9.5467 -5.5861 20 1 4.6369 8.4078 -5.5590 21 6 3.7506 1.9845 -0.1261 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 0.8978 2.7536 1.4375 26 1 2.1432 1.7017 2.1866 27 1 2.3952 4.5122 1.1305 28 1 3.3120 3.7099 2.4342 29 1 4.4629 4.6912 -2.0811 30 1 3.8384 5.8927 -0.9258 31 1 6.0873 6.9290 -0.7891 32 1 6.7111 5.7273 -1.9445 33 1 8.0009 8.9358 -3.2120 34 1 4.2899 1.2103 0.4197 35 1 4.0484 1.9858 -1.1746 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451731725.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:04:38 Heat of formation + Delta-G solvation = -102.773314 kcal Electronic energy + Delta-G solvation = -17914.046324 eV Core-core repulsion = 14971.190552 eV Total energy + Delta-G solvation = -2942.855772 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 279.075 amu Computer time = 2.17 seconds Orbital eigenvalues (eV) -39.38350 -38.23786 -37.07348 -35.91369 -33.14718 -32.13579 -30.12062 -29.59244 -27.61367 -24.10517 -23.18705 -22.43829 -20.01466 -19.19544 -18.39187 -17.89079 -17.16934 -16.98482 -16.56400 -16.30699 -15.26123 -15.08204 -14.87867 -14.50079 -14.44998 -14.22462 -14.07042 -13.75370 -13.65342 -13.28376 -13.20976 -12.94175 -12.90970 -12.80957 -12.59664 -12.27709 -12.18832 -12.14608 -11.96153 -11.76501 -11.20109 -10.81409 -10.65760 -10.01123 -8.66586 -8.27049 -6.41532 -0.81667 0.66250 1.40596 1.42583 1.53694 1.62220 1.75894 2.37410 2.80725 3.00073 3.06520 3.37314 3.60192 3.94759 3.99311 4.08725 4.25428 4.31409 4.41463 4.43632 4.46714 4.71736 4.74150 4.77295 4.88728 4.98170 5.00644 5.18473 5.22655 5.25513 5.35933 5.66814 6.04308 6.72027 7.28872 8.85284 Molecular weight = 279.07amu Principal moments of inertia in cm(-1) A = 0.025444 B = 0.004159 C = 0.003833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.201929 B = 6731.169933 C = 7303.617040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 S -0.284 6.284 3 C -0.064 4.064 4 H 0.117 0.883 5 C -0.109 4.109 6 C 0.108 3.892 7 N -1.012 6.012 8 S 2.631 3.369 9 O -0.989 6.989 10 O -0.993 6.993 11 C -0.583 4.583 12 C 0.019 3.981 13 C -0.539 4.539 14 H 0.076 0.924 15 C -0.004 4.004 16 N -0.935 5.935 17 Si 0.975 3.025 18 H -0.270 1.270 19 H -0.283 1.283 20 H -0.257 1.257 21 C 0.137 3.863 22 H 0.092 0.908 23 H 0.086 0.914 24 H 0.110 0.890 25 H 0.113 0.887 26 H 0.091 0.909 27 H 0.085 0.915 28 H 0.071 0.929 29 H 0.141 0.859 30 H 0.143 0.857 31 H 0.007 0.993 32 H 0.006 0.994 33 H 0.268 0.732 34 H 0.071 0.929 35 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.181 -14.414 6.207 24.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.279 4.279 2 S -0.057 6.057 3 C -0.194 4.194 4 H 0.135 0.865 5 C -0.149 4.149 6 C -0.017 4.017 7 N -0.852 5.852 8 S 2.730 3.270 9 O -0.980 6.980 10 O -0.983 6.983 11 C -0.716 4.716 12 C -0.020 4.020 13 C -0.578 4.578 14 H 0.095 0.905 15 C -0.203 4.203 16 N -0.574 5.574 17 Si 0.799 3.201 18 H -0.195 1.195 19 H -0.209 1.209 20 H -0.181 1.181 21 C 0.011 3.989 22 H 0.110 0.890 23 H 0.105 0.895 24 H 0.129 0.871 25 H 0.131 0.869 26 H 0.109 0.891 27 H 0.103 0.897 28 H 0.090 0.910 29 H 0.159 0.841 30 H 0.162 0.838 31 H 0.026 0.974 32 H 0.024 0.976 33 H 0.076 0.924 34 H 0.089 0.911 35 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -16.450 -15.205 6.658 23.369 hybrid contribution -0.735 1.855 -1.042 2.251 sum -17.185 -13.349 5.616 22.474 Atomic orbital electron populations 1.23458 0.90688 1.07515 1.06203 1.87101 1.11088 1.09563 1.97978 1.24361 0.98193 0.94430 1.02404 0.86506 1.23023 1.00481 0.96139 0.95283 1.22060 0.87056 0.99817 0.92807 1.58589 1.42157 1.29550 1.54886 1.04260 0.72992 0.73796 0.75936 1.93492 1.85331 1.72278 1.46878 1.93499 1.55993 1.64341 1.84490 1.30357 1.10317 1.12926 1.17987 1.18840 0.92154 0.93590 0.97401 1.21504 1.01087 1.18538 1.16698 0.90549 1.26135 0.94863 0.98871 1.00387 1.70106 1.08531 1.35165 1.43597 0.85291 0.78031 0.78640 0.78159 1.19507 1.20871 1.18120 1.21793 0.94281 0.83713 0.99163 0.88950 0.89522 0.87107 0.86903 0.89080 0.89666 0.91023 0.84119 0.83841 0.97446 0.97556 0.92360 0.91093 0.89542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.96 10.76 113.37 1.22 0.26 16 2 S -0.28 -4.66 21.82 -56.49 -1.23 -5.90 16 3 C -0.06 -1.03 3.54 31.98 0.11 -0.91 16 4 H 0.12 1.59 8.14 -2.38 -0.02 1.57 16 5 C -0.11 -1.46 6.43 31.78 0.20 -1.26 16 6 C 0.11 2.14 6.92 86.68 0.60 2.74 16 7 N -1.01 -26.73 3.63 -505.79 -1.84 -28.56 16 8 S 2.63 96.72 5.65 -56.49 -0.32 96.40 16 9 O -0.99 -41.99 17.61 -127.65 -2.25 -44.24 16 10 O -0.99 -42.94 17.61 -127.65 -2.25 -45.19 16 11 C -0.58 -22.02 6.12 71.98 0.44 -21.58 16 12 C 0.02 1.00 4.98 29.85 0.15 1.15 16 13 C -0.54 -29.83 9.11 25.60 0.23 -29.59 16 14 H 0.08 3.88 7.74 -2.91 -0.02 3.85 16 15 C 0.00 -0.23 5.46 84.65 0.46 0.23 16 16 N -0.93 -56.97 13.29 21.45 0.28 -56.68 16 17 Si 0.98 43.06 29.54 68.60 2.03 45.08 16 18 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 19 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 20 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 21 C 0.14 3.13 6.36 86.85 0.55 3.68 16 22 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 23 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 24 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 25 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.09 1.23 8.03 -2.39 -0.02 1.21 16 27 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 28 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.14 4.66 8.14 -2.39 -0.02 4.64 16 30 H 0.14 4.66 8.14 -2.39 -0.02 4.64 16 31 H 0.01 0.41 8.14 -2.38 -0.02 0.39 16 32 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 33 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 34 H 0.07 1.72 8.03 -2.39 -0.02 1.70 16 35 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -75.76 319.96 -0.54 -76.30 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: 1.06 Total: 8.06 kcal Atomic # 6 Polarization: -49.26 SS G_CDS: 3.97 Total: -45.29 kcal Atomic # 7 Polarization: -83.69 SS G_CDS: -1.55 Total: -85.24 kcal Atomic # 8 Polarization: -84.93 SS G_CDS: -4.50 Total: -89.42 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.08 kcal Atomic # 16 Polarization: 92.06 SS G_CDS: -1.55 Total: 90.50 kcal Total: -75.76 -0.54 -76.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451731725.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.469 kcal (2) G-P(sol) polarization free energy of solvation -75.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.18 seconds