Wall clock time and date at job start Fri Apr 10 2020 14:00:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46504 * 119.99979 * 2 1 4 4 C 1.50704 * 109.46548 * 269.99524 * 3 2 1 5 5 H 1.08001 * 120.00105 * 359.97438 * 4 3 2 6 6 C 1.37879 * 119.99680 * 179.97438 * 4 3 2 7 7 N 1.31511 * 119.99757 * 0.02562 * 6 4 3 8 8 Si 1.86799 * 119.99929 * 179.97438 * 6 4 3 9 9 H 1.48498 * 109.47103 * 60.00094 * 8 6 4 10 10 H 1.48496 * 109.47119 * 180.02562 * 8 6 4 11 11 H 1.48495 * 109.47213 * 300.00356 * 8 6 4 12 12 C 1.34771 * 120.00033 * 179.97438 * 2 1 3 13 13 O 1.21703 * 120.00144 * 180.02562 * 12 2 1 14 14 C 1.46382 * 120.00142 * 0.02562 * 12 2 1 15 15 C 1.34849 * 119.99964 * 173.17823 * 14 12 2 16 16 C 1.47153 * 120.00451 * 348.85073 * 15 14 12 17 17 C 1.39871 * 120.15146 * 316.32529 * 16 15 14 18 18 C 1.37836 * 119.83820 * 179.78849 * 17 16 15 19 19 C 1.38551 * 120.15904 * 0.48428 * 18 17 16 20 20 Cl 1.73593 * 119.84438 * 179.76236 * 19 18 17 21 21 C 1.38552 * 120.31547 * 359.74718 * 19 18 17 22 22 C 1.37838 * 120.15686 * 0.02562 * 21 19 18 23 23 H 1.09003 * 109.47506 * 270.00517 * 1 2 3 24 24 H 1.08995 * 109.47085 * 30.00516 * 1 2 3 25 25 H 1.09005 * 109.47024 * 150.00323 * 1 2 3 26 26 H 1.08999 * 109.46920 * 29.99150 * 3 2 1 27 27 H 1.08996 * 109.46969 * 149.99472 * 3 2 1 28 28 H 0.97008 * 119.99722 * 179.97438 * 7 6 4 29 29 H 1.08002 * 120.00467 * 352.90835 * 14 12 2 30 30 H 1.08009 * 120.00011 * 168.85245 * 15 14 12 31 31 H 1.08002 * 120.08426 * 0.02562 * 17 16 15 32 32 H 1.08002 * 119.92350 * 180.20713 * 18 17 16 33 33 H 1.08001 * 119.92334 * 179.97438 * 21 19 18 34 34 H 1.07999 * 120.08396 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7036 -1.4209 5 1 2.0982 1.0955 -2.2417 6 6 3.1261 2.8778 -1.6729 7 7 3.5533 3.6180 -0.6733 8 14 3.4381 3.4166 -3.4341 9 1 2.1408 3.5932 -4.1349 10 1 4.1805 4.7026 -3.4342 11 1 4.2415 2.3818 -4.1333 12 6 2.1389 -1.1672 0.0005 13 8 3.3559 -1.1672 0.0010 14 6 1.4070 -2.4349 0.0005 15 6 2.0742 -3.5986 -0.1377 16 6 3.4919 -3.5917 -0.5317 17 6 3.9324 -2.7468 -1.5558 18 6 5.2626 -2.7424 -1.9167 19 6 6.1609 -3.5794 -1.2747 20 17 7.8332 -3.5716 -1.7400 21 6 5.7308 -4.4224 -0.2627 22 6 4.4043 -4.4340 0.1119 23 1 -0.3634 0.0001 1.0277 24 1 -0.3633 0.8899 -0.5139 25 1 -0.3633 -0.8901 -0.5138 26 1 1.6083 2.0284 0.5137 27 1 3.1498 1.1384 0.5139 28 1 4.0302 4.4439 -0.8506 29 1 0.3331 -2.4386 0.1156 30 1 1.5679 -4.5358 0.0409 31 1 3.2326 -2.0967 -2.0599 32 1 5.6048 -2.0882 -2.7050 33 1 6.4363 -5.0725 0.2332 34 1 4.0704 -5.0913 0.9011 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491201014.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:00:15 Heat of formation + Delta-G solvation = 12.820967 kcal Electronic energy + Delta-G solvation = -19076.216158 eV Core-core repulsion = 16000.885272 eV Total energy + Delta-G solvation = -3075.330886 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.077 amu Computer time = 4.24 seconds Orbital eigenvalues (eV) -39.65016 -38.35695 -36.29968 -34.90181 -33.42960 -32.58092 -30.79578 -29.41477 -27.76617 -25.85809 -24.11646 -22.61132 -22.28386 -20.48389 -18.09216 -17.10453 -16.60614 -16.38728 -15.47199 -15.09435 -14.70035 -14.31824 -14.12402 -13.73093 -13.29183 -13.17826 -12.96133 -12.47004 -12.28521 -12.14368 -11.85340 -11.49999 -11.29202 -11.24233 -11.06506 -10.89895 -10.59797 -10.56196 -10.17439 -9.70009 -9.54508 -9.08432 -8.60391 -8.44758 -7.76330 -7.60382 -6.05593 -4.10811 0.89023 1.67351 2.02676 2.35403 3.30203 3.35322 3.37376 3.95154 3.98595 4.04474 4.43762 4.85383 4.99593 5.12317 5.15545 5.28911 5.43259 5.54919 5.67680 5.72528 5.90995 5.96241 6.10964 6.17933 6.23252 6.33186 6.50351 6.60940 6.81177 7.06276 7.10289 7.43511 7.52116 7.90271 8.21270 8.40374 8.88045 9.08318 9.54313 11.02344 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.014052 B = 0.006061 C = 0.004544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.119278 B = 4618.792190 C = 6160.676002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.595 5.595 3 C 0.245 3.755 4 C -0.526 4.526 5 H 0.056 0.944 6 C 0.062 3.938 7 N -0.894 5.894 8 Si 0.896 3.104 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.523 3.477 13 O -0.528 6.528 14 C -0.193 4.193 15 C -0.050 4.050 16 C -0.058 4.058 17 C -0.015 4.015 18 C -0.118 4.118 19 C -0.024 4.024 20 Cl -0.086 7.086 21 C -0.129 4.129 22 C -0.095 4.095 23 H 0.044 0.956 24 H 0.074 0.926 25 H 0.059 0.941 26 H 0.031 0.969 27 H 0.044 0.956 28 H 0.264 0.736 29 H 0.131 0.869 30 H 0.132 0.868 31 H 0.126 0.874 32 H 0.129 0.871 33 H 0.126 0.874 34 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.946 -15.906 0.547 16.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.326 5.326 3 C 0.126 3.874 4 C -0.565 4.565 5 H 0.074 0.926 6 C -0.140 4.140 7 N -0.533 5.533 8 Si 0.724 3.276 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.201 1.201 12 C 0.311 3.689 13 O -0.407 6.407 14 C -0.214 4.214 15 C -0.070 4.070 16 C -0.058 4.058 17 C -0.033 4.033 18 C -0.137 4.137 19 C -0.051 4.051 20 Cl -0.057 7.057 21 C -0.148 4.148 22 C -0.114 4.114 23 H 0.063 0.937 24 H 0.092 0.908 25 H 0.077 0.923 26 H 0.049 0.951 27 H 0.062 0.938 28 H 0.074 0.926 29 H 0.148 0.852 30 H 0.150 0.850 31 H 0.144 0.856 32 H 0.147 0.853 33 H 0.144 0.856 34 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -2.069 -15.658 0.560 15.804 hybrid contribution 0.154 0.624 -0.881 1.091 sum -1.915 -15.035 -0.322 15.159 Atomic orbital electron populations 1.21679 0.81537 1.02567 1.00439 1.48158 1.06164 1.07975 1.70291 1.19289 0.92570 0.78017 0.97511 1.21353 1.36710 1.06273 0.92133 0.92584 1.24926 0.95348 0.96389 0.97345 1.69921 1.38216 1.14348 1.30787 0.86586 0.78361 0.77927 0.84727 1.20260 1.21151 1.20133 1.18304 0.87747 0.84170 0.78656 1.90851 1.13143 1.86769 1.49936 1.23389 1.00174 0.93364 1.04505 1.22236 0.92614 0.97495 0.94658 1.18936 0.93331 0.96856 0.96715 1.21112 0.95053 0.92829 0.94315 1.20866 0.92813 0.98842 1.01209 1.20969 0.84641 1.00424 0.99050 1.98340 1.17603 1.97980 1.91778 1.20726 0.96237 1.00206 0.97603 1.21027 0.92273 0.98776 0.99293 0.93744 0.90761 0.92281 0.95127 0.93751 0.92636 0.85171 0.85010 0.85583 0.85273 0.85577 0.85601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.26 10.10 59.85 0.60 1.86 16 2 N -0.59 -12.37 2.86 -184.62 -0.53 -12.90 16 3 C 0.25 6.36 5.16 -5.19 -0.03 6.33 16 4 C -0.53 -14.67 9.39 -34.44 -0.32 -14.99 16 5 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 6 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 7 N -0.89 -26.54 13.29 55.43 0.74 -25.80 16 8 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 16 9 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 C 0.52 10.51 6.64 -12.99 -0.09 10.42 16 13 O -0.53 -12.50 11.74 5.19 0.06 -12.44 16 14 C -0.19 -2.80 9.03 -37.51 -0.34 -3.14 16 15 C -0.05 -0.65 9.81 -37.17 -0.36 -1.02 16 16 C -0.06 -0.90 4.54 -105.06 -0.48 -1.37 16 17 C -0.01 -0.26 6.60 -39.12 -0.26 -0.52 16 18 C -0.12 -2.04 9.81 -39.61 -0.39 -2.43 16 19 C -0.02 -0.38 6.33 -39.35 -0.25 -0.63 16 20 Cl -0.09 -1.24 28.95 -51.86 -1.50 -2.74 16 21 C -0.13 -1.81 9.81 -39.61 -0.39 -2.20 16 22 C -0.10 -1.31 9.79 -39.12 -0.38 -1.69 16 23 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.07 1.18 8.07 -51.93 -0.42 0.76 16 25 H 0.06 0.73 6.20 -51.93 -0.32 0.40 16 26 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 27 H 0.04 1.30 7.42 -51.93 -0.39 0.92 16 28 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 29 H 0.13 1.45 6.34 -52.49 -0.33 1.11 16 30 H 0.13 1.18 8.06 -52.48 -0.42 0.76 16 31 H 0.13 2.37 7.02 -52.49 -0.37 2.00 16 32 H 0.13 2.17 8.06 -52.49 -0.42 1.75 16 33 H 0.13 1.47 8.06 -52.49 -0.42 1.04 16 34 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 LS Contribution 309.77 15.07 4.67 4.67 Total: -1.00 -32.35 309.77 -8.27 -40.61 By element: Atomic # 1 Polarization: 3.52 SS G_CDS: -3.91 Total: -0.39 kcal Atomic # 6 Polarization: -4.94 SS G_CDS: -2.78 Total: -7.72 kcal Atomic # 7 Polarization: -38.91 SS G_CDS: 0.21 Total: -38.70 kcal Atomic # 8 Polarization: -12.50 SS G_CDS: 0.06 Total: -12.44 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Atomic # 17 Polarization: -1.24 SS G_CDS: -1.50 Total: -2.74 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -32.35 -8.27 -40.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491201014.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.435 kcal (2) G-P(sol) polarization free energy of solvation -32.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.24 seconds