Wall clock time and date at job start Fri Apr 10 2020 14:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 C 1.81395 * 103.00240 * 2 1 4 4 C 1.52999 * 109.47395 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.47167 * 180.02562 * 4 3 2 6 6 S 1.65602 * 119.99699 * 165.27707 * 5 4 3 7 7 O 1.42108 * 104.27382 * 180.79762 * 6 5 4 8 8 O 1.42093 * 104.27799 * 308.65309 * 6 5 4 9 9 C 1.81394 * 104.45036 * 64.72636 * 6 5 4 10 10 C 1.52998 * 109.47299 * 173.87111 * 9 6 5 11 11 C 1.50699 * 115.54907 * 65.26885 * 10 9 6 12 12 H 1.07999 * 120.00357 * 268.54409 * 11 10 9 13 13 C 1.37880 * 119.99986 * 88.55068 * 11 10 9 14 14 N 1.31511 * 120.00224 * 174.70141 * 13 11 10 15 15 Si 1.86801 * 120.00053 * 354.69864 * 13 11 10 16 16 H 1.48499 * 109.47053 * 92.55135 * 15 13 11 17 17 H 1.48496 * 109.47263 * 212.55623 * 15 13 11 18 18 H 1.48498 * 109.46965 * 332.55652 * 15 13 11 19 19 C 1.53004 * 117.50138 * 279.60087 * 10 9 6 20 20 C 1.53000 * 117.50175 * 210.93986 * 10 9 6 21 21 H 1.09001 * 109.47310 * 59.99706 * 1 2 3 22 22 H 1.09007 * 109.47494 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47321 * 300.00122 * 1 2 3 24 24 H 1.09008 * 109.47217 * 60.00041 * 3 2 1 25 25 H 1.09007 * 109.47034 * 300.00267 * 3 2 1 26 26 H 1.09001 * 109.46558 * 60.00260 * 4 3 2 27 27 H 1.08992 * 109.46928 * 300.00265 * 4 3 2 28 28 H 0.97002 * 120.00318 * 345.00345 * 5 4 3 29 29 H 1.08996 * 109.47300 * 293.87248 * 9 6 5 30 30 H 1.08999 * 109.47414 * 53.87300 * 9 6 5 31 31 H 0.96997 * 120.00232 * 180.02562 * 14 13 11 32 32 H 1.09003 * 117.49542 * 0.02562 * 19 10 9 33 33 H 1.09000 * 117.49964 * 145.01302 * 19 10 9 34 34 H 1.08997 * 117.50053 * 214.97519 * 20 10 9 35 35 H 1.08998 * 117.49690 * 359.97438 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2221 1.7674 0.0000 4 6 3.7423 1.9399 0.0006 5 7 4.0719 3.3673 0.0013 6 16 5.6095 3.8619 0.3665 7 8 5.5496 5.2795 0.2877 8 8 5.9058 3.2082 1.5929 9 6 6.6310 3.1923 -0.9747 10 6 8.0631 3.7117 -0.8331 11 6 8.8040 3.2485 0.3947 12 1 8.7725 3.8382 1.2990 13 6 9.5223 2.0720 0.3636 14 7 10.2529 1.7200 1.3989 15 14 9.4577 0.9780 -1.1492 16 1 10.5740 1.3304 -2.0629 17 1 9.5844 -0.4433 -0.7380 18 1 8.1633 1.1773 -1.8492 19 6 8.3564 5.1236 -1.3445 20 6 8.8739 3.9069 -2.1158 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8900 24 1 1.8031 2.2371 0.8900 25 1 1.8031 2.2371 -0.8900 26 1 4.1615 1.4702 -0.8892 27 1 4.1608 1.4703 0.8908 28 1 3.3904 4.0225 -0.2161 29 1 6.6324 2.1036 -0.9215 30 1 6.2231 3.5086 -1.9347 31 1 10.7585 0.8925 1.3768 32 1 7.5289 5.6826 -1.7815 33 1 9.0854 5.7173 -0.7931 34 1 9.9433 3.7007 -2.0716 35 1 8.3872 3.6648 -3.0606 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590739902.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:04:08 Heat of formation + Delta-G solvation = -49.232416 kcal Electronic energy + Delta-G solvation = -18229.071481 eV Core-core repulsion = 15288.537416 eV Total energy + Delta-G solvation = -2940.534065 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 279.075 amu Computer time = 4.43 seconds Orbital eigenvalues (eV) -37.14214 -36.46060 -35.87826 -35.16374 -32.16261 -30.05424 -29.13049 -28.53247 -25.52986 -23.16747 -21.72733 -19.71797 -18.76542 -17.25582 -16.71441 -16.28350 -16.04920 -15.55935 -15.15059 -15.02527 -14.39006 -14.05372 -13.86417 -13.74817 -13.01497 -12.83099 -12.66658 -12.55464 -12.35392 -12.12759 -11.44780 -11.30434 -11.23131 -11.15445 -10.94116 -10.66003 -10.38356 -10.28330 -10.12663 -9.75617 -9.39593 -9.16676 -8.66165 -8.47487 -7.94724 -6.16654 -4.24437 0.82545 1.38982 2.28366 3.23036 3.32894 3.33591 3.37996 4.33012 4.35568 4.52007 4.65684 4.80175 4.81016 4.83269 4.87807 5.06878 5.15082 5.29250 5.37539 5.54800 5.61871 5.70246 5.89194 5.98230 6.02870 6.18258 6.42101 6.64355 6.86866 7.05393 7.07947 7.59331 8.36856 8.88613 9.44410 10.94804 Molecular weight = 279.07amu Principal moments of inertia in cm(-1) A = 0.019655 B = 0.005635 C = 0.004973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.223887 B = 4968.116848 C = 5629.241735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.248 6.248 3 C -0.095 4.095 4 C 0.130 3.870 5 N -1.131 6.131 6 S 2.615 3.385 7 O -0.967 6.967 8 O -0.937 6.937 9 C -0.576 4.576 10 C 0.001 3.999 11 C -0.510 4.510 12 H 0.087 0.913 13 C 0.089 3.911 14 N -0.882 5.882 15 Si 0.873 3.127 16 H -0.275 1.275 17 H -0.290 1.290 18 H -0.257 1.257 19 C -0.177 4.177 20 C -0.185 4.185 21 H 0.076 0.924 22 H 0.102 0.898 23 H 0.077 0.923 24 H 0.091 0.909 25 H 0.088 0.912 26 H 0.073 0.927 27 H 0.093 0.907 28 H 0.410 0.590 29 H 0.126 0.874 30 H 0.107 0.893 31 H 0.267 0.733 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.630 -1.234 -7.013 19.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S -0.024 6.024 3 C -0.245 4.245 4 C 0.002 3.998 5 N -0.889 5.889 6 S 2.710 3.290 7 O -0.957 6.957 8 O -0.926 6.926 9 C -0.708 4.708 10 C -0.002 4.002 11 C -0.547 4.547 12 H 0.105 0.895 13 C -0.116 4.116 14 N -0.517 5.517 15 Si 0.701 3.299 16 H -0.201 1.201 17 H -0.216 1.216 18 H -0.181 1.181 19 C -0.214 4.214 20 C -0.223 4.223 21 H 0.095 0.905 22 H 0.121 0.879 23 H 0.096 0.904 24 H 0.109 0.891 25 H 0.106 0.894 26 H 0.091 0.909 27 H 0.111 0.889 28 H 0.243 0.757 29 H 0.145 0.855 30 H 0.126 0.874 31 H 0.077 0.923 32 H 0.100 0.900 33 H 0.114 0.886 34 H 0.111 0.889 35 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -16.468 -1.886 -6.084 17.657 hybrid contribution -1.101 0.161 -1.587 1.938 sum -17.569 -1.724 -7.671 19.248 Atomic orbital electron populations 1.23393 0.94123 1.06627 1.04955 1.87079 1.07223 1.09978 1.98088 1.23580 0.99835 0.95259 1.05787 1.20908 0.93266 0.81798 1.03787 1.56069 1.30357 1.13006 1.89438 1.04990 0.72701 0.74357 0.76961 1.93524 1.85475 1.28874 1.87838 1.93587 1.82633 1.76477 1.39928 1.30297 1.11291 1.12565 1.16661 1.18855 0.89022 0.96427 0.95881 1.20339 1.30461 1.08171 0.95755 0.89509 1.24946 0.93748 0.96959 0.95906 1.69890 1.27972 1.23647 1.30178 0.86934 0.79729 0.79674 0.83607 1.20129 1.21606 1.18094 1.23026 1.03118 0.91017 1.04240 1.22986 1.00413 1.04035 0.94904 0.90491 0.87928 0.90370 0.89053 0.89366 0.90916 0.88881 0.75718 0.85536 0.87406 0.92254 0.90020 0.88611 0.88890 0.90666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.82 10.76 101.05 1.09 0.27 16 2 S -0.25 -2.58 22.38 -107.50 -2.41 -4.99 16 3 C -0.09 -0.92 6.08 37.16 0.23 -0.69 16 4 C 0.13 1.62 6.13 -4.04 -0.02 1.60 16 5 N -1.13 -15.22 5.89 -10.62 -0.06 -15.28 16 6 S 2.61 49.93 5.19 -107.50 -0.56 49.37 16 7 O -0.97 -20.08 18.08 -57.54 -1.04 -21.12 16 8 O -0.94 -21.99 17.18 -57.54 -0.99 -22.98 16 9 C -0.58 -11.05 5.54 37.16 0.21 -10.84 16 10 C 0.00 0.02 0.79 -155.66 -0.12 -0.10 16 11 C -0.51 -14.21 8.77 -34.44 -0.30 -14.51 16 12 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 13 C 0.09 2.54 5.47 -17.82 -0.10 2.44 16 14 N -0.88 -26.71 13.96 55.43 0.77 -25.93 16 15 Si 0.87 20.96 24.96 -169.99 -4.24 16.71 16 16 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 17 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 18 H -0.26 -5.62 5.68 56.52 0.32 -5.30 16 19 C -0.18 -3.62 9.96 -26.69 -0.27 -3.88 16 20 C -0.18 -3.80 7.67 -26.69 -0.20 -4.01 16 21 H 0.08 0.43 8.14 -51.92 -0.42 0.01 16 22 H 0.10 0.59 8.14 -51.92 -0.42 0.17 16 23 H 0.08 0.47 8.14 -51.92 -0.42 0.04 16 24 H 0.09 0.82 8.14 -51.92 -0.42 0.40 16 25 H 0.09 0.69 8.14 -51.92 -0.42 0.26 16 26 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.09 1.32 7.70 -51.93 -0.40 0.92 16 28 H 0.41 4.36 8.62 -34.47 -0.30 4.06 16 29 H 0.13 2.39 6.53 -51.93 -0.34 2.06 16 30 H 0.11 1.65 8.09 -51.92 -0.42 1.23 16 31 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 32 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 33 H 0.10 1.98 8.14 -51.93 -0.42 1.56 16 34 H 0.09 2.00 7.34 -51.93 -0.38 1.62 16 35 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 316.63 15.07 4.77 4.77 Total: -1.00 -34.41 316.63 -8.53 -42.95 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -5.28 Total: 6.23 kcal Atomic # 6 Polarization: -30.23 SS G_CDS: 0.50 Total: -29.73 kcal Atomic # 7 Polarization: -41.93 SS G_CDS: 0.71 Total: -41.22 kcal Atomic # 8 Polarization: -42.07 SS G_CDS: -2.03 Total: -44.10 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.24 Total: 16.71 kcal Atomic # 16 Polarization: 47.35 SS G_CDS: -2.96 Total: 44.38 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -34.41 -8.53 -42.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590739902.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.285 kcal (2) G-P(sol) polarization free energy of solvation -34.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.43 seconds