Wall clock time and date at job start Fri Apr 10 2020 14:04:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 C 1.81395 * 103.00240 * 2 1 4 4 C 1.52999 * 109.47395 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.47167 * 180.02562 * 4 3 2 6 6 S 1.65602 * 119.99699 * 165.27707 * 5 4 3 7 7 O 1.42108 * 104.27382 * 180.79762 * 6 5 4 8 8 O 1.42093 * 104.27799 * 308.65309 * 6 5 4 9 9 C 1.81394 * 104.45036 * 64.72636 * 6 5 4 10 10 C 1.52998 * 109.47299 * 173.87111 * 9 6 5 11 11 C 1.50699 * 115.54907 * 65.26885 * 10 9 6 12 12 H 1.07999 * 120.00357 * 268.54409 * 11 10 9 13 13 C 1.37880 * 119.99986 * 88.55068 * 11 10 9 14 14 N 1.31511 * 120.00224 * 174.70141 * 13 11 10 15 15 Si 1.86801 * 120.00053 * 354.69864 * 13 11 10 16 16 H 1.48499 * 109.47053 * 92.55135 * 15 13 11 17 17 H 1.48496 * 109.47263 * 212.55623 * 15 13 11 18 18 H 1.48498 * 109.46965 * 332.55652 * 15 13 11 19 19 C 1.53004 * 117.50138 * 279.60087 * 10 9 6 20 20 C 1.53000 * 117.50175 * 210.93986 * 10 9 6 21 21 H 1.09001 * 109.47310 * 59.99706 * 1 2 3 22 22 H 1.09007 * 109.47494 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47321 * 300.00122 * 1 2 3 24 24 H 1.09008 * 109.47217 * 60.00041 * 3 2 1 25 25 H 1.09007 * 109.47034 * 300.00267 * 3 2 1 26 26 H 1.09001 * 109.46558 * 60.00260 * 4 3 2 27 27 H 1.08992 * 109.46928 * 300.00265 * 4 3 2 28 28 H 0.97002 * 120.00318 * 345.00345 * 5 4 3 29 29 H 1.08996 * 109.47300 * 293.87248 * 9 6 5 30 30 H 1.08999 * 109.47414 * 53.87300 * 9 6 5 31 31 H 0.96997 * 120.00232 * 180.02562 * 14 13 11 32 32 H 1.09003 * 117.49542 * 0.02562 * 19 10 9 33 33 H 1.09000 * 117.49964 * 145.01302 * 19 10 9 34 34 H 1.08997 * 117.50053 * 214.97519 * 20 10 9 35 35 H 1.08998 * 117.49690 * 359.97438 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2221 1.7674 0.0000 4 6 3.7423 1.9399 0.0006 5 7 4.0719 3.3673 0.0013 6 16 5.6095 3.8619 0.3665 7 8 5.5496 5.2795 0.2877 8 8 5.9058 3.2082 1.5929 9 6 6.6310 3.1923 -0.9747 10 6 8.0631 3.7117 -0.8331 11 6 8.8040 3.2485 0.3947 12 1 8.7725 3.8382 1.2990 13 6 9.5223 2.0720 0.3636 14 7 10.2529 1.7200 1.3989 15 14 9.4577 0.9780 -1.1492 16 1 10.5740 1.3304 -2.0629 17 1 9.5844 -0.4433 -0.7380 18 1 8.1633 1.1773 -1.8492 19 6 8.3564 5.1236 -1.3445 20 6 8.8739 3.9069 -2.1158 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8900 24 1 1.8031 2.2371 0.8900 25 1 1.8031 2.2371 -0.8900 26 1 4.1615 1.4702 -0.8892 27 1 4.1608 1.4703 0.8908 28 1 3.3904 4.0225 -0.2161 29 1 6.6324 2.1036 -0.9215 30 1 6.2231 3.5086 -1.9347 31 1 10.7585 0.8925 1.3768 32 1 7.5289 5.6826 -1.7815 33 1 9.0854 5.7173 -0.7931 34 1 9.9433 3.7007 -2.0716 35 1 8.3872 3.6648 -3.0606 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590739902.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:04:00 Heat of formation + Delta-G solvation = -76.447014 kcal Electronic energy + Delta-G solvation = -18230.251594 eV Core-core repulsion = 15288.537416 eV Total energy + Delta-G solvation = -2941.714178 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 279.075 amu Computer time = 4.12 seconds Orbital eigenvalues (eV) -38.84433 -38.03877 -37.03174 -36.74406 -34.28952 -30.96902 -30.08947 -29.68636 -27.60433 -24.10702 -23.34315 -21.41274 -20.32972 -18.69604 -18.50755 -17.44289 -17.10084 -16.90684 -16.86164 -16.17522 -15.86540 -15.49620 -14.82280 -14.68591 -14.56850 -14.32926 -13.96851 -13.60020 -13.53913 -13.22844 -13.10190 -12.97525 -12.86886 -12.66651 -12.38715 -12.36210 -12.03966 -11.77054 -11.68482 -10.98298 -10.96198 -10.72643 -10.62899 -10.12738 -8.71524 -8.31823 -6.45089 -0.62778 0.64264 1.36108 1.38055 1.50902 1.63351 2.05676 2.36187 2.85631 3.00844 3.15806 3.38313 3.65712 3.79549 3.91144 4.16075 4.32355 4.36656 4.36916 4.37539 4.40519 4.47843 4.63111 4.69709 4.86811 4.91037 4.94087 5.04506 5.22333 5.46281 5.62501 6.12074 6.20035 6.66673 7.27787 8.84551 Molecular weight = 279.07amu Principal moments of inertia in cm(-1) A = 0.019655 B = 0.005635 C = 0.004973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.223887 B = 4968.116848 C = 5629.241735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 S -0.308 6.308 3 C -0.081 4.081 4 C 0.121 3.879 5 N -1.109 6.109 6 S 2.622 3.378 7 O -0.989 6.989 8 O -0.995 6.995 9 C -0.572 4.572 10 C -0.035 4.035 11 C -0.514 4.514 12 H 0.028 0.972 13 C 0.026 3.974 14 N -0.942 5.942 15 Si 0.932 3.068 16 H -0.262 1.262 17 H -0.296 1.296 18 H -0.213 1.213 19 C -0.173 4.173 20 C -0.168 4.168 21 H 0.092 0.908 22 H 0.112 0.888 23 H 0.086 0.914 24 H 0.096 0.904 25 H 0.115 0.885 26 H 0.090 0.910 27 H 0.067 0.933 28 H 0.427 0.573 29 H 0.131 0.869 30 H 0.161 0.839 31 H 0.268 0.732 32 H 0.114 0.886 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.268 -1.453 -10.837 23.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.275 4.275 2 S -0.084 6.084 3 C -0.231 4.231 4 C -0.006 4.006 5 N -0.871 5.871 6 S 2.718 3.282 7 O -0.979 6.979 8 O -0.985 6.985 9 C -0.705 4.705 10 C -0.037 4.037 11 C -0.551 4.551 12 H 0.046 0.954 13 C -0.173 4.173 14 N -0.580 5.580 15 Si 0.755 3.245 16 H -0.187 1.187 17 H -0.223 1.223 18 H -0.135 1.135 19 C -0.210 4.210 20 C -0.207 4.207 21 H 0.111 0.889 22 H 0.130 0.870 23 H 0.105 0.895 24 H 0.114 0.886 25 H 0.134 0.866 26 H 0.108 0.892 27 H 0.086 0.914 28 H 0.263 0.737 29 H 0.149 0.851 30 H 0.179 0.821 31 H 0.077 0.923 32 H 0.133 0.867 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -19.142 -2.056 -9.913 21.654 hybrid contribution -0.333 0.307 -0.304 0.546 sum -19.476 -1.750 -10.217 22.062 Atomic orbital electron populations 1.23450 0.90230 1.07668 1.06176 1.87299 1.11589 1.11292 1.98268 1.23479 0.97606 0.94588 1.07400 1.21083 0.95535 0.80531 1.03475 1.55418 1.28621 1.14088 1.88991 1.04387 0.73746 0.73535 0.76486 1.93481 1.86207 1.30165 1.88080 1.93527 1.84131 1.77361 1.43480 1.30158 1.08664 1.12739 1.18892 1.18782 0.90925 0.98829 0.95175 1.20468 1.30932 1.07547 0.96177 0.95372 1.25958 0.93165 0.98678 0.99535 1.70066 1.30028 1.24600 1.33330 0.85986 0.82175 0.76696 0.79685 1.18736 1.22261 1.13514 1.23110 1.03730 0.90439 1.03695 1.23093 0.99681 1.02684 0.95212 0.88869 0.86991 0.89513 0.88564 0.86623 0.89228 0.91427 0.73670 0.85050 0.82091 0.92282 0.86746 0.90268 0.90317 0.86266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.12 10.76 113.37 1.22 0.10 16 2 S -0.31 -5.85 22.38 -56.49 -1.26 -7.11 16 3 C -0.08 -1.35 6.08 71.98 0.44 -0.91 16 4 C 0.12 2.76 6.13 86.38 0.53 3.29 16 5 N -1.11 -27.20 5.89 -187.50 -1.10 -28.30 16 6 S 2.62 97.89 5.19 -56.49 -0.29 97.60 16 7 O -0.99 -40.11 18.08 -127.65 -2.31 -42.42 16 8 O -1.00 -48.55 17.18 -127.65 -2.19 -50.75 16 9 C -0.57 -19.99 5.54 71.98 0.40 -19.59 16 10 C -0.03 -1.52 0.79 -52.93 -0.04 -1.56 16 11 C -0.51 -29.59 8.77 25.60 0.22 -29.37 16 12 H 0.03 1.88 8.06 -2.91 -0.02 1.85 16 13 C 0.03 1.49 5.47 84.66 0.46 1.96 16 14 N -0.94 -60.06 13.96 21.45 0.30 -59.76 16 15 Si 0.93 42.20 24.96 68.60 1.71 43.91 16 16 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 17 H -0.30 -13.59 7.11 99.48 0.71 -12.89 16 18 H -0.21 -8.08 5.68 99.48 0.57 -7.52 16 19 C -0.17 -6.66 9.96 30.62 0.30 -6.35 16 20 C -0.17 -6.26 7.67 30.62 0.23 -6.02 16 21 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 22 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 23 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 24 H 0.10 1.49 8.14 -2.39 -0.02 1.48 16 25 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.07 1.91 7.70 -2.39 -0.02 1.89 16 28 H 0.43 7.71 8.62 -96.74 -0.83 6.87 16 29 H 0.13 4.49 6.53 -2.39 -0.02 4.48 16 30 H 0.16 3.88 8.09 -2.39 -0.02 3.86 16 31 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 32 H 0.11 3.66 8.14 -2.39 -0.02 3.64 16 33 H 0.08 3.26 8.14 -2.39 -0.02 3.25 16 34 H 0.08 3.16 7.34 -2.39 -0.02 3.14 16 35 H 0.12 3.43 8.14 -2.39 -0.02 3.42 16 Total: -1.00 -80.56 316.63 -1.27 -81.83 By element: Atomic # 1 Polarization: 23.35 SS G_CDS: 0.11 Total: 23.46 kcal Atomic # 6 Polarization: -62.23 SS G_CDS: 3.77 Total: -58.46 kcal Atomic # 7 Polarization: -87.26 SS G_CDS: -0.80 Total: -88.06 kcal Atomic # 8 Polarization: -88.66 SS G_CDS: -4.50 Total: -93.16 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 1.71 Total: 43.91 kcal Atomic # 16 Polarization: 92.04 SS G_CDS: -1.56 Total: 90.48 kcal Total: -80.56 -1.27 -81.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590739902.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.383 kcal (2) G-P(sol) polarization free energy of solvation -80.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.12 seconds