Wall clock time and date at job start Fri Apr 10 2020 14:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46511 * 1 3 3 C 1.37089 * 119.99979 * 2 1 4 4 H 1.08003 * 120.00236 * 171.98633 * 3 2 1 5 5 C 1.38958 * 120.00010 * 351.97782 * 3 2 1 6 6 N 1.31413 * 120.00025 * 5.52592 * 5 3 2 7 7 Si 1.86800 * 120.00006 * 185.52439 * 5 3 2 8 8 H 1.48506 * 109.46982 * 0.02562 * 7 5 3 9 9 H 1.48491 * 109.47206 * 120.00130 * 7 5 3 10 10 H 1.48503 * 109.47023 * 240.00473 * 7 5 3 11 11 C 1.34778 * 119.99737 * 179.97438 * 2 1 3 12 12 O 1.21294 * 119.99709 * 184.80969 * 11 2 1 13 13 C 1.50699 * 119.99998 * 4.81427 * 11 2 1 14 14 H 1.08995 * 110.27180 * 319.39885 * 13 11 2 15 15 C 1.54349 * 110.30383 * 81.47480 * 13 11 2 16 16 C 1.54347 * 102.39579 * 92.66336 * 15 13 11 17 17 C 1.51368 * 105.17107 * 26.35059 * 16 15 13 18 18 C 1.38241 * 109.75577 * 342.81532 * 17 16 15 19 19 C 1.38464 * 119.85770 * 179.97438 * 18 17 16 20 20 C 1.38150 * 120.24559 * 359.97438 * 19 18 17 21 21 C 1.38197 * 119.94647 * 0.02562 * 20 19 18 22 22 C 1.38255 * 119.92069 * 0.02562 * 21 20 19 23 23 Cl 1.73602 * 119.90624 * 180.02562 * 22 21 20 24 24 H 1.09001 * 109.46529 * 183.25586 * 1 2 3 25 25 H 1.08993 * 109.46622 * 303.25405 * 1 2 3 26 26 H 1.08997 * 109.47118 * 63.25597 * 1 2 3 27 27 H 0.96998 * 119.99609 * 179.97438 * 6 5 3 28 28 H 1.08997 * 110.82572 * 210.88982 * 15 13 11 29 29 H 1.09002 * 110.81956 * 334.44399 * 15 13 11 30 30 H 1.09002 * 110.30479 * 145.27602 * 16 15 13 31 31 H 1.08998 * 110.30524 * 267.42962 * 16 15 13 32 32 H 1.08004 * 119.87455 * 180.02562 * 19 18 17 33 33 H 1.08001 * 120.02819 * 180.02562 * 20 19 18 34 34 H 1.07998 * 120.03562 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1506 1.1872 0.0000 4 1 3.2227 1.1918 0.1304 5 6 1.4660 2.3847 -0.1679 6 7 0.1528 2.3895 -0.2179 7 14 2.4123 3.9878 -0.3227 8 1 3.8691 3.7130 -0.2359 9 1 2.1054 4.6195 -1.6310 10 1 2.0149 4.9052 0.7754 11 6 2.1389 -1.1672 0.0005 12 8 3.3487 -1.1690 0.0886 13 6 1.3894 -2.4700 -0.1084 14 1 0.4821 -2.4353 0.4946 15 6 1.0415 -2.7661 -1.5828 16 6 2.2392 -3.6260 -2.0395 17 6 2.7563 -4.2862 -0.7794 18 6 2.2679 -3.6220 0.3303 19 6 2.6122 -4.0549 1.5997 20 6 3.4413 -5.1480 1.7611 21 6 3.9301 -5.8128 0.6525 22 6 3.5887 -5.3819 -0.6161 23 17 4.2025 -6.2176 -2.0085 24 1 -0.3632 -1.0260 0.0584 25 1 -0.3632 0.5635 0.8594 26 1 -0.3633 0.4624 -0.9177 27 1 -0.3250 3.2255 -0.3347 28 1 0.1107 -3.3284 -1.6559 29 1 0.9846 -1.8434 -2.1602 30 1 1.9121 -4.3805 -2.7549 31 1 3.0113 -2.9954 -2.4802 32 1 2.2304 -3.5364 2.4668 33 1 3.7073 -5.4829 2.7528 34 1 4.5787 -6.6673 0.7770 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611413882.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:01:05 Heat of formation + Delta-G solvation = -3.271577 kcal Electronic energy + Delta-G solvation = -19500.861102 eV Core-core repulsion = 16424.832391 eV Total energy + Delta-G solvation = -3076.028711 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.077 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -40.30353 -38.13849 -36.35148 -35.23258 -34.56979 -31.64373 -30.90510 -28.91397 -27.65915 -26.15169 -24.32109 -22.52522 -21.50454 -20.83153 -18.73223 -16.95346 -16.42254 -16.24134 -15.44705 -15.02749 -14.85417 -14.21523 -13.90916 -13.76042 -13.40527 -13.00261 -12.95318 -12.31924 -11.88059 -11.69791 -11.57158 -11.41533 -11.28178 -11.02810 -11.00526 -10.86397 -10.76273 -10.74511 -10.52303 -10.33553 -10.07462 -9.04508 -8.65246 -8.41079 -8.14191 -7.86592 -6.25888 -3.82458 1.39197 1.48706 2.30217 3.13063 3.23888 3.31329 3.79538 3.83427 4.12415 4.55078 4.76442 4.92220 5.06601 5.12363 5.31692 5.35397 5.47441 5.56085 5.64049 5.79244 5.94136 6.00461 6.11472 6.14346 6.24335 6.36528 6.42476 6.46096 6.56831 6.79457 7.00849 7.07631 7.38900 7.55056 8.06248 8.47715 9.18145 9.43415 9.97289 10.68468 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.029471 B = 0.004613 C = 0.004556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.856604 B = 6067.851944 C = 6144.135188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.112 3.888 2 N -0.447 5.447 3 C -0.298 4.298 4 H 0.104 0.896 5 C 0.026 3.974 6 N -0.889 5.889 7 Si 0.929 3.071 8 H -0.268 1.268 9 H -0.280 1.280 10 H -0.281 1.281 11 C 0.450 3.550 12 O -0.586 6.586 13 C -0.068 4.068 14 H 0.095 0.905 15 C -0.106 4.106 16 C -0.077 4.077 17 C -0.076 4.076 18 C -0.041 4.041 19 C -0.093 4.093 20 C -0.112 4.112 21 C -0.118 4.118 22 C -0.024 4.024 23 Cl -0.085 7.085 24 H 0.024 0.976 25 H 0.066 0.934 26 H 0.072 0.928 27 H 0.265 0.735 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.087 0.913 32 H 0.124 0.876 33 H 0.130 0.870 34 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.448 -13.474 -0.342 13.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.166 5.166 3 C -0.426 4.426 4 H 0.122 0.878 5 C -0.175 4.175 6 N -0.531 5.531 7 Si 0.756 3.244 8 H -0.193 1.193 9 H -0.206 1.206 10 H -0.207 1.207 11 C 0.237 3.763 12 O -0.471 6.471 13 C -0.089 4.089 14 H 0.113 0.887 15 C -0.144 4.144 16 C -0.114 4.114 17 C -0.076 4.076 18 C -0.041 4.041 19 C -0.111 4.111 20 C -0.131 4.131 21 C -0.137 4.137 22 C -0.050 4.050 23 Cl -0.056 7.056 24 H 0.042 0.958 25 H 0.085 0.915 26 H 0.091 0.909 27 H 0.075 0.925 28 H 0.095 0.905 29 H 0.103 0.897 30 H 0.094 0.906 31 H 0.105 0.895 32 H 0.142 0.858 33 H 0.148 0.852 34 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 0.041 -13.350 -0.448 13.358 hybrid contribution 0.307 0.868 -0.080 0.924 sum 0.347 -12.483 -0.528 12.499 Atomic orbital electron populations 1.21859 0.80341 0.96301 1.04584 1.43694 1.05996 1.04668 1.62215 1.19848 0.93864 0.82279 1.46571 0.87849 1.25309 0.95791 0.99649 0.96753 1.70162 1.05932 1.27121 1.49839 0.85804 0.79782 0.80994 0.77827 1.19269 1.20638 1.20746 1.19485 0.87770 0.83878 0.85177 1.90534 1.14016 1.86747 1.55829 1.20794 0.97928 0.92487 0.97710 0.88661 1.22253 0.97497 1.00439 0.94162 1.21037 0.97962 0.98090 0.94271 1.20361 0.96349 0.93698 0.97237 1.20136 0.97003 0.94436 0.92554 1.20709 0.97712 0.96184 0.96533 1.20888 0.97967 0.95994 0.98207 1.20824 1.01353 1.01100 0.90414 1.20403 1.00658 0.96002 0.87951 1.98332 1.86751 1.77703 1.42796 0.95796 0.91514 0.90934 0.92457 0.90524 0.89665 0.90618 0.89511 0.85823 0.85236 0.85258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.48 8.73 59.85 0.52 3.00 16 2 N -0.45 -11.28 3.03 -122.19 -0.37 -11.65 16 3 C -0.30 -8.23 9.55 -14.93 -0.14 -8.38 16 4 H 0.10 3.03 7.19 -52.48 -0.38 2.65 16 5 C 0.03 0.69 5.46 -17.46 -0.10 0.59 16 6 N -0.89 -22.96 9.47 55.50 0.53 -22.44 16 7 Si 0.93 20.72 29.56 -169.99 -5.02 15.69 16 8 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 9 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 10 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 11 C 0.45 10.77 6.71 -10.99 -0.07 10.69 16 12 O -0.59 -16.25 15.80 5.55 0.09 -16.16 16 13 C -0.07 -1.25 2.29 -91.89 -0.21 -1.46 16 14 H 0.10 1.59 6.41 -51.93 -0.33 1.25 16 15 C -0.11 -1.67 6.46 -25.32 -0.16 -1.83 16 16 C -0.08 -1.21 6.46 -26.85 -0.17 -1.38 16 17 C -0.08 -1.27 6.05 -104.17 -0.63 -1.90 16 18 C -0.04 -0.72 4.80 -104.21 -0.50 -1.22 16 19 C -0.09 -1.48 10.04 -39.53 -0.40 -1.88 16 20 C -0.11 -1.52 10.04 -39.63 -0.40 -1.92 16 21 C -0.12 -1.62 9.82 -39.59 -0.39 -2.01 16 22 C -0.02 -0.36 6.32 -39.45 -0.25 -0.61 16 23 Cl -0.08 -1.15 28.71 -51.86 -1.49 -2.64 16 24 H 0.02 0.43 5.30 -51.93 -0.28 0.15 16 25 H 0.07 1.57 7.19 -51.93 -0.37 1.19 16 26 H 0.07 1.68 6.92 -51.93 -0.36 1.32 16 27 H 0.26 6.50 8.31 -40.82 -0.34 6.16 16 28 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 29 H 0.08 1.44 7.89 -51.93 -0.41 1.03 16 30 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 32 H 0.12 1.81 8.06 -52.48 -0.42 1.39 16 33 H 0.13 1.35 8.06 -52.49 -0.42 0.92 16 34 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 LS Contribution 298.44 15.07 4.50 4.50 Total: -1.00 -30.42 298.44 -8.47 -38.89 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -3.80 Total: 2.11 kcal Atomic # 6 Polarization: -5.40 SS G_CDS: -2.90 Total: -8.30 kcal Atomic # 7 Polarization: -34.24 SS G_CDS: 0.16 Total: -34.09 kcal Atomic # 8 Polarization: -16.25 SS G_CDS: 0.09 Total: -16.16 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 17 Polarization: -1.15 SS G_CDS: -1.49 Total: -2.64 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -30.42 -8.47 -38.89 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611413882.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.621 kcal (2) G-P(sol) polarization free energy of solvation -30.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds