Wall clock time and date at job start Fri Apr 10 2020 14:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.81405 * 102.99907 * 2 1 4 4 H 1.09007 * 112.90235 * 43.74948 * 3 2 1 5 5 C 1.53779 * 113.61409 * 174.99887 * 3 2 1 6 6 C 1.53776 * 87.08037 * 139.98312 * 5 3 2 7 7 H 1.08999 * 113.61761 * 219.93405 * 6 5 3 8 8 N 1.46505 * 113.61544 * 89.11373 * 6 5 3 9 9 S 1.65601 * 119.99942 * 144.99908 * 8 6 5 10 10 O 1.42100 * 104.27822 * 308.93012 * 9 8 6 11 11 O 1.42103 * 104.27772 * 181.07676 * 9 8 6 12 12 C 1.81399 * 104.44938 * 65.00328 * 9 8 6 13 13 C 1.52999 * 109.46810 * 179.97438 * 12 9 8 14 14 C 1.50706 * 109.46953 * 180.02562 * 13 12 9 15 15 H 1.07999 * 119.99816 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00344 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99769 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00300 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.46691 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.46740 * 119.99592 * 18 16 14 21 21 H 1.48497 * 109.47025 * 239.99950 * 18 16 14 22 22 C 1.53775 * 113.61562 * 272.50077 * 3 2 1 23 23 H 1.09000 * 109.46910 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47595 * 299.99769 * 1 2 3 25 25 H 1.09003 * 109.47346 * 59.99853 * 1 2 3 26 26 H 1.08996 * 113.61417 * 25.43480 * 5 3 2 27 27 H 1.08997 * 113.69109 * 254.54196 * 5 3 2 28 28 H 0.97000 * 119.99809 * 325.00659 * 8 6 5 29 29 H 1.09000 * 109.47070 * 299.99993 * 12 9 8 30 30 H 1.09001 * 109.46593 * 59.99990 * 12 9 8 31 31 H 1.09000 * 109.47486 * 299.99969 * 13 12 9 32 32 H 1.09001 * 109.47362 * 60.00691 * 13 12 9 33 33 H 0.97000 * 120.00540 * 180.02562 * 17 16 14 34 34 H 1.08999 * 113.61551 * 105.47286 * 22 3 2 35 35 H 1.09000 * 113.61291 * 334.56281 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 1 1.6107 2.3441 0.6944 5 6 3.7283 2.0520 0.1228 6 6 3.5205 3.1738 -0.9083 7 1 4.3243 3.2481 -1.6407 8 7 3.1760 4.4655 -0.3088 9 16 3.7276 5.8692 -0.9928 10 8 5.1251 5.6603 -1.1430 11 8 3.2269 6.8930 -0.1440 12 6 2.9156 5.9324 -2.6138 13 6 3.3494 7.2001 -3.3523 14 6 2.6744 7.2530 -4.6987 15 1 2.0028 6.4617 -4.9974 16 6 2.9141 8.3115 -5.5490 17 7 3.7315 9.2753 -5.1850 18 14 2.0780 8.3766 -7.2182 19 1 1.2130 7.1812 -7.3854 20 1 1.2475 9.6044 -7.3081 21 1 3.1082 8.3963 -8.2874 22 6 2.3007 2.3816 -1.4076 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 4.3572 1.2383 -0.2381 27 1 4.0269 2.4133 1.1069 28 1 2.6249 4.4985 0.4887 29 1 3.1999 5.0564 -3.1969 30 1 1.8341 5.9433 -2.4781 31 1 3.0648 8.0759 -2.7690 32 1 4.4309 7.1896 -3.4879 33 1 3.8999 10.0202 -5.7830 34 1 1.4455 3.0091 -1.6587 35 1 2.5394 1.6579 -2.1870 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867674849.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:04:24 Heat of formation + Delta-G solvation = -65.264612 kcal Electronic energy + Delta-G solvation = -17759.401023 eV Core-core repulsion = 14818.171750 eV Total energy + Delta-G solvation = -2941.229273 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 279.075 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.34577 -36.60836 -35.48706 -33.91946 -32.68521 -31.19051 -29.23923 -26.02756 -25.57489 -25.22418 -21.70385 -20.08574 -19.14756 -17.75254 -16.74242 -16.41659 -16.12899 -15.44329 -15.25586 -14.73360 -14.57553 -14.47971 -13.92084 -13.50448 -13.44431 -13.17432 -12.78675 -12.54471 -12.12892 -11.78555 -11.64765 -11.58206 -11.38831 -11.13000 -11.11145 -10.98409 -10.74012 -10.41578 -10.40980 -10.11779 -9.84114 -9.52587 -9.07494 -8.52832 -7.93490 -6.14695 -4.20331 0.73014 1.45901 2.29685 3.03875 3.23737 3.31153 3.34254 4.11497 4.13986 4.24627 4.35935 4.48807 4.61491 4.74668 4.84564 4.86749 5.08656 5.20760 5.31407 5.40884 5.47084 5.55267 5.63594 5.68336 5.71848 5.74057 6.18216 6.45324 6.99596 7.27619 7.33443 7.78397 8.14938 8.83344 9.44698 10.96374 Molecular weight = 279.07amu Principal moments of inertia in cm(-1) A = 0.021100 B = 0.004207 C = 0.003683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.671769 B = 6654.089763 C = 7601.317710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 S -0.260 6.260 3 C -0.081 4.081 4 H 0.105 0.895 5 C -0.114 4.114 6 C 0.131 3.869 7 H 0.115 0.885 8 N -1.109 6.109 9 S 2.592 3.408 10 O -0.964 6.964 11 O -0.967 6.967 12 C -0.587 4.587 13 C 0.027 3.973 14 C -0.520 4.520 15 H 0.062 0.938 16 C 0.058 3.942 17 N -0.890 5.890 18 Si 0.900 3.100 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.282 1.282 22 C -0.146 4.146 23 H 0.098 0.902 24 H 0.075 0.925 25 H 0.078 0.922 26 H 0.102 0.898 27 H 0.085 0.915 28 H 0.411 0.589 29 H 0.120 0.880 30 H 0.120 0.880 31 H 0.033 0.967 32 H 0.034 0.966 33 H 0.265 0.735 34 H 0.082 0.918 35 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.037 -17.033 9.971 20.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 S -0.032 6.032 3 C -0.210 4.210 4 H 0.123 0.877 5 C -0.155 4.155 6 C 0.020 3.980 7 H 0.132 0.868 8 N -0.864 5.864 9 S 2.690 3.310 10 O -0.954 6.954 11 O -0.957 6.957 12 C -0.721 4.721 13 C -0.012 4.012 14 C -0.559 4.559 15 H 0.080 0.920 16 C -0.145 4.145 17 N -0.528 5.528 18 Si 0.727 3.273 19 H -0.197 1.197 20 H -0.208 1.208 21 H -0.208 1.208 22 C -0.188 4.188 23 H 0.116 0.884 24 H 0.094 0.906 25 H 0.097 0.903 26 H 0.120 0.880 27 H 0.104 0.896 28 H 0.244 0.756 29 H 0.138 0.862 30 H 0.139 0.861 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.074 0.926 34 H 0.101 0.899 35 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -3.561 -17.183 10.231 20.313 hybrid contribution -2.108 0.800 -0.941 2.443 sum -5.669 -16.384 9.290 19.669 Atomic orbital electron populations 1.23348 0.94362 1.06267 1.05020 1.86808 1.07367 1.11306 1.97696 1.24782 1.01192 0.93433 1.01565 0.87715 1.23157 0.93078 0.98237 1.01037 1.21542 0.97445 0.82905 0.96083 0.86762 1.55695 1.69329 1.20233 1.41111 1.05632 0.75398 0.72250 0.77741 1.93551 1.30127 1.84472 1.87271 1.93559 1.81689 1.55386 1.65066 1.30451 1.12606 1.10439 1.18567 1.18979 0.97993 0.88071 0.96177 1.21032 1.27588 1.07416 0.99887 0.91994 1.25069 0.95177 0.95456 0.98785 1.69961 1.35413 1.10505 1.36934 0.86417 0.79322 0.78081 0.83489 1.19661 1.20812 1.20768 1.23883 0.99791 0.99645 0.95498 0.88355 0.90628 0.90318 0.87980 0.89636 0.75564 0.86195 0.86145 0.94843 0.94765 0.92564 0.89933 0.87590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.84 10.76 101.05 1.09 0.25 16 2 S -0.26 -2.39 22.17 -107.50 -2.38 -4.78 16 3 C -0.08 -0.70 4.10 -25.92 -0.11 -0.80 16 4 H 0.10 0.83 8.11 -51.93 -0.42 0.41 16 5 C -0.11 -1.02 7.46 -25.92 -0.19 -1.21 16 6 C 0.13 1.35 4.40 -67.12 -0.30 1.06 16 7 H 0.11 1.21 7.76 -51.93 -0.40 0.81 16 8 N -1.11 -13.12 5.62 -4.20 -0.02 -13.14 16 9 S 2.59 43.98 5.43 -107.50 -0.58 43.40 16 10 O -0.96 -19.30 17.58 -57.54 -1.01 -20.31 16 11 O -0.97 -19.41 18.08 -57.54 -1.04 -20.45 16 12 C -0.59 -10.68 6.01 37.16 0.22 -10.46 16 13 C 0.03 0.67 4.98 -27.88 -0.14 0.53 16 14 C -0.52 -14.11 9.11 -34.44 -0.31 -14.43 16 15 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 16 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 17 N -0.89 -26.22 13.29 55.43 0.74 -25.48 16 18 Si 0.90 20.95 29.54 -169.99 -5.02 15.93 16 19 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 C -0.15 -1.31 7.47 -25.92 -0.19 -1.50 16 23 H 0.10 0.58 8.14 -51.92 -0.42 0.16 16 24 H 0.07 0.47 8.14 -51.92 -0.42 0.05 16 25 H 0.08 0.52 8.14 -51.92 -0.42 0.10 16 26 H 0.10 0.85 8.10 -51.93 -0.42 0.43 16 27 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.41 4.03 8.74 -34.47 -0.30 3.73 16 29 H 0.12 1.93 8.14 -51.92 -0.42 1.50 16 30 H 0.12 1.96 8.14 -51.92 -0.42 1.54 16 31 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 34 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.11 0.89 8.10 -51.93 -0.42 0.47 16 LS Contribution 322.90 15.07 4.87 4.87 Total: -1.00 -34.27 322.90 -9.80 -44.07 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -5.31 Total: 0.94 kcal Atomic # 6 Polarization: -25.02 SS G_CDS: -0.03 Total: -25.05 kcal Atomic # 7 Polarization: -39.34 SS G_CDS: 0.71 Total: -38.62 kcal Atomic # 8 Polarization: -38.71 SS G_CDS: -2.05 Total: -40.76 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Atomic # 16 Polarization: 41.59 SS G_CDS: -2.97 Total: 38.63 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -34.27 -9.80 -44.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867674849.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.195 kcal (2) G-P(sol) polarization free energy of solvation -34.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds