Wall clock time and date at job start Fri Apr 10 2020 14:04:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.81405 * 102.99907 * 2 1 4 4 H 1.09007 * 112.90235 * 43.74948 * 3 2 1 5 5 C 1.53779 * 113.61409 * 174.99887 * 3 2 1 6 6 C 1.53776 * 87.08037 * 139.98312 * 5 3 2 7 7 H 1.08999 * 113.61761 * 219.93405 * 6 5 3 8 8 N 1.46505 * 113.61544 * 89.11373 * 6 5 3 9 9 S 1.65601 * 119.99942 * 144.99908 * 8 6 5 10 10 O 1.42100 * 104.27822 * 308.93012 * 9 8 6 11 11 O 1.42103 * 104.27772 * 181.07676 * 9 8 6 12 12 C 1.81399 * 104.44938 * 65.00328 * 9 8 6 13 13 C 1.52999 * 109.46810 * 179.97438 * 12 9 8 14 14 C 1.50706 * 109.46953 * 180.02562 * 13 12 9 15 15 H 1.07999 * 119.99816 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00344 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99769 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00300 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.46691 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.46740 * 119.99592 * 18 16 14 21 21 H 1.48497 * 109.47025 * 239.99950 * 18 16 14 22 22 C 1.53775 * 113.61562 * 272.50077 * 3 2 1 23 23 H 1.09000 * 109.46910 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47595 * 299.99769 * 1 2 3 25 25 H 1.09003 * 109.47346 * 59.99853 * 1 2 3 26 26 H 1.08996 * 113.61417 * 25.43480 * 5 3 2 27 27 H 1.08997 * 113.69109 * 254.54196 * 5 3 2 28 28 H 0.97000 * 119.99809 * 325.00659 * 8 6 5 29 29 H 1.09000 * 109.47070 * 299.99993 * 12 9 8 30 30 H 1.09001 * 109.46593 * 59.99990 * 12 9 8 31 31 H 1.09000 * 109.47486 * 299.99969 * 13 12 9 32 32 H 1.09001 * 109.47362 * 60.00691 * 13 12 9 33 33 H 0.97000 * 120.00540 * 180.02562 * 17 16 14 34 34 H 1.08999 * 113.61551 * 105.47286 * 22 3 2 35 35 H 1.09000 * 113.61291 * 334.56281 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 1 1.6107 2.3441 0.6944 5 6 3.7283 2.0520 0.1228 6 6 3.5205 3.1738 -0.9083 7 1 4.3243 3.2481 -1.6407 8 7 3.1760 4.4655 -0.3088 9 16 3.7276 5.8692 -0.9928 10 8 5.1251 5.6603 -1.1430 11 8 3.2269 6.8930 -0.1440 12 6 2.9156 5.9324 -2.6138 13 6 3.3494 7.2001 -3.3523 14 6 2.6744 7.2530 -4.6987 15 1 2.0028 6.4617 -4.9974 16 6 2.9141 8.3115 -5.5490 17 7 3.7315 9.2753 -5.1850 18 14 2.0780 8.3766 -7.2182 19 1 1.2130 7.1812 -7.3854 20 1 1.2475 9.6044 -7.3081 21 1 3.1082 8.3963 -8.2874 22 6 2.3007 2.3816 -1.4076 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 4.3572 1.2383 -0.2381 27 1 4.0269 2.4133 1.1069 28 1 2.6249 4.4985 0.4887 29 1 3.1999 5.0564 -3.1969 30 1 1.8341 5.9433 -2.4781 31 1 3.0648 8.0759 -2.7690 32 1 4.4309 7.1896 -3.4879 33 1 3.8999 10.0202 -5.7830 34 1 1.4455 3.0091 -1.6587 35 1 2.5394 1.6579 -2.1870 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867674849.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:04:20 Heat of formation + Delta-G solvation = -90.005533 kcal Electronic energy + Delta-G solvation = -17760.473869 eV Core-core repulsion = 14818.171750 eV Total energy + Delta-G solvation = -2942.302120 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 279.075 amu Computer time = 6.76 seconds Orbital eigenvalues (eV) -40.13197 -38.12661 -37.00930 -35.87658 -33.68469 -33.10729 -29.76104 -27.59462 -26.65365 -26.01348 -23.57610 -20.98415 -20.33733 -19.20355 -18.40710 -17.36275 -17.19125 -17.00012 -16.51036 -16.36410 -15.54447 -15.40047 -15.05659 -14.57009 -14.45716 -14.04303 -13.93949 -13.69591 -13.50067 -13.22259 -13.18315 -13.11124 -12.94305 -12.76500 -12.27721 -12.23715 -12.10379 -11.89017 -11.71012 -11.48199 -11.10462 -10.76735 -10.64315 -10.35810 -8.62497 -8.24956 -6.38548 -0.67964 0.83488 1.42187 1.42360 1.55578 1.67930 1.82824 2.38907 2.81560 3.08964 3.26426 3.44483 3.46376 3.74711 3.91815 4.05766 4.14335 4.29592 4.36577 4.38619 4.58576 4.78259 4.80536 4.86347 4.92454 4.97358 5.04134 5.29941 5.30452 5.39958 5.70219 6.07496 6.11349 6.75753 7.31783 8.87520 Molecular weight = 279.07amu Principal moments of inertia in cm(-1) A = 0.021100 B = 0.004207 C = 0.003683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.671769 B = 6654.089763 C = 7601.317710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 S -0.297 6.297 3 C -0.073 4.073 4 H 0.114 0.886 5 C -0.111 4.111 6 C 0.116 3.884 7 H 0.112 0.888 8 N -1.089 6.089 9 S 2.622 3.378 10 O -0.996 6.996 11 O -0.999 6.999 12 C -0.585 4.585 13 C 0.018 3.982 14 C -0.536 4.536 15 H 0.077 0.923 16 C -0.004 4.004 17 N -0.935 5.935 18 Si 0.973 3.027 19 H -0.255 1.255 20 H -0.280 1.280 21 H -0.279 1.279 22 C -0.140 4.140 23 H 0.107 0.893 24 H 0.083 0.917 25 H 0.082 0.918 26 H 0.108 0.892 27 H 0.089 0.911 28 H 0.425 0.575 29 H 0.144 0.856 30 H 0.143 0.857 31 H 0.006 0.994 32 H 0.007 0.993 33 H 0.267 0.733 34 H 0.088 0.912 35 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.688 -18.898 9.677 22.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.282 4.282 2 S -0.069 6.069 3 C -0.201 4.201 4 H 0.132 0.868 5 C -0.151 4.151 6 C 0.006 3.994 7 H 0.130 0.870 8 N -0.848 5.848 9 S 2.719 3.281 10 O -0.986 6.986 11 O -0.990 6.990 12 C -0.717 4.717 13 C -0.021 4.021 14 C -0.575 4.575 15 H 0.095 0.905 16 C -0.203 4.203 17 N -0.575 5.575 18 Si 0.797 3.203 19 H -0.178 1.178 20 H -0.205 1.205 21 H -0.205 1.205 22 C -0.182 4.182 23 H 0.126 0.874 24 H 0.102 0.898 25 H 0.101 0.899 26 H 0.126 0.874 27 H 0.107 0.893 28 H 0.261 0.739 29 H 0.162 0.838 30 H 0.162 0.838 31 H 0.024 0.976 32 H 0.026 0.974 33 H 0.075 0.925 34 H 0.106 0.894 35 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -5.229 -19.060 9.943 22.124 hybrid contribution -1.595 1.296 -0.781 2.198 sum -6.824 -17.764 9.162 21.120 Atomic orbital electron populations 1.23395 0.92030 1.07137 1.05643 1.86953 1.10038 1.12139 1.97761 1.24753 1.00936 0.92942 1.01489 0.86791 1.23157 0.93704 0.97551 1.00706 1.21797 0.98484 0.82235 0.96912 0.87036 1.55109 1.69295 1.19269 1.41127 1.04425 0.74376 0.72486 0.76800 1.93510 1.32294 1.85225 1.87562 1.93508 1.82007 1.57733 1.65719 1.30339 1.14206 1.07878 1.19301 1.18842 0.96394 0.90489 0.96367 1.21553 1.27520 1.07669 1.00748 0.90506 1.26103 0.95842 0.95110 1.03197 1.70106 1.37266 1.11426 1.38670 0.85280 0.78302 0.78612 0.78147 1.17849 1.20537 1.20462 1.23877 0.98998 0.99377 0.95942 0.87427 0.89810 0.89855 0.87373 0.89286 0.73896 0.83779 0.83846 0.97595 0.97426 0.92454 0.89358 0.86945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.28 10.76 113.37 1.22 -0.06 16 2 S -0.30 -4.85 22.17 -56.49 -1.25 -6.11 16 3 C -0.07 -1.06 4.10 31.12 0.13 -0.93 16 4 H 0.11 1.46 8.11 -2.38 -0.02 1.44 16 5 C -0.11 -1.73 7.46 31.12 0.23 -1.50 16 6 C 0.12 2.14 4.40 45.52 0.20 2.34 16 7 H 0.11 2.17 7.76 -2.39 -0.02 2.15 16 8 N -1.09 -23.67 5.62 -167.19 -0.94 -24.61 16 9 S 2.62 87.72 5.43 -56.49 -0.31 87.41 16 10 O -1.00 -39.97 17.58 -127.65 -2.24 -42.22 16 11 O -1.00 -40.11 18.08 -127.65 -2.31 -42.42 16 12 C -0.58 -20.73 6.01 71.98 0.43 -20.30 16 13 C 0.02 0.92 4.98 29.85 0.15 1.06 16 14 C -0.54 -29.04 9.11 25.60 0.23 -28.80 16 15 H 0.08 3.82 7.74 -2.91 -0.02 3.80 16 16 C 0.00 -0.24 5.46 84.65 0.46 0.23 16 17 N -0.93 -56.38 13.29 21.45 0.28 -56.10 16 18 Si 0.97 42.67 29.54 68.60 2.03 44.70 16 19 H -0.25 -10.37 7.11 99.48 0.71 -9.66 16 20 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 21 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 22 C -0.14 -2.12 7.47 31.12 0.23 -1.89 16 23 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 24 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 25 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.11 1.60 8.10 -2.39 -0.02 1.58 16 27 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.42 7.32 8.74 -96.74 -0.85 6.48 16 29 H 0.14 4.36 8.14 -2.39 -0.02 4.34 16 30 H 0.14 4.39 8.14 -2.39 -0.02 4.37 16 31 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 32 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 33 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 34 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.11 1.60 8.10 -2.39 -0.02 1.58 16 Total: -1.00 -74.43 322.90 -1.22 -75.65 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: 0.23 Total: 13.55 kcal Atomic # 6 Polarization: -53.14 SS G_CDS: 3.29 Total: -49.85 kcal Atomic # 7 Polarization: -80.05 SS G_CDS: -0.65 Total: -80.71 kcal Atomic # 8 Polarization: -80.09 SS G_CDS: -4.55 Total: -84.64 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Atomic # 16 Polarization: 82.86 SS G_CDS: -1.56 Total: 81.31 kcal Total: -74.43 -1.22 -75.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867674849.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.359 kcal (2) G-P(sol) polarization free energy of solvation -74.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.76 seconds