Wall clock time and date at job start Fri Apr 10 2020 14:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00096 * 2 1 4 4 H 1.48500 * 109.47087 * 269.99831 * 3 2 1 5 5 H 1.48498 * 109.47300 * 29.99871 * 3 2 1 6 6 H 1.48501 * 109.46957 * 149.99732 * 3 2 1 7 7 C 1.37876 * 120.00037 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99462 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00231 * 180.02562 * 7 2 1 10 10 N 1.46504 * 109.47036 * 180.02562 * 9 7 2 11 11 C 1.34781 * 119.99724 * 180.02562 * 10 9 7 12 12 O 1.21277 * 119.99936 * 359.97438 * 11 10 9 13 13 C 1.50701 * 119.99844 * 180.02562 * 11 10 9 14 14 O 1.42899 * 109.47130 * 179.97438 * 13 11 10 15 15 C 1.35694 * 117.00093 * 179.97438 * 14 13 11 16 16 C 1.39021 * 119.90499 * 0.27444 * 15 14 13 17 17 C 1.37679 * 120.09068 * 180.28089 * 16 15 14 18 18 C 1.39794 * 119.90398 * 359.43972 * 17 16 15 19 19 C 1.47473 * 120.08904 * 180.29757 * 18 17 16 20 20 O 1.21498 * 120.00032 * 0.02562 * 19 18 17 21 21 O 1.34752 * 119.99783 * 180.02562 * 19 18 17 22 22 C 1.39784 * 119.81736 * 0.28441 * 18 17 16 23 23 C 1.37681 * 119.90771 * 359.97438 * 22 18 17 24 24 H 0.97005 * 119.99606 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47024 * 60.00112 * 9 7 2 26 26 H 1.09000 * 109.46964 * 299.99795 * 9 7 2 27 27 H 0.96996 * 120.00047 * 359.97438 * 10 9 7 28 28 H 1.09000 * 109.46919 * 59.99470 * 13 11 10 29 29 H 1.09000 * 109.46708 * 299.99382 * 13 11 10 30 30 H 1.07998 * 119.95278 * 359.97438 * 16 15 14 31 31 H 1.08002 * 120.04953 * 179.72504 * 17 16 15 32 32 H 0.96703 * 116.99904 * 180.02562 * 21 19 18 33 33 H 1.08005 * 120.04680 * 180.02562 * 22 18 17 34 34 H 1.08000 * 119.95490 * 180.02562 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4644 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 3.9998 -2.5754 0.0010 11 6 5.3249 -2.8216 0.0020 12 8 6.1130 -1.8998 0.0025 13 6 5.8272 -4.2425 0.0013 14 8 7.2562 -4.2425 0.0019 15 6 7.8722 -5.4516 0.0020 16 6 7.1131 -6.6162 -0.0044 17 6 7.7341 -7.8450 0.0014 18 6 9.1300 -7.9204 0.0020 19 6 9.7995 -9.2344 0.0016 20 8 9.1377 -10.2534 0.0003 21 8 11.1451 -9.3050 0.0026 22 6 9.8895 -6.7469 0.0025 23 6 9.2605 -5.5221 0.0021 24 1 -0.4850 0.8401 -0.0004 25 1 3.8745 -0.6801 0.8911 26 1 3.8751 -0.6805 -0.8889 27 1 3.3694 -3.3126 0.0010 28 1 5.4645 -4.7556 -0.8894 29 1 5.4631 -4.7569 0.8906 30 1 6.0347 -6.5570 -0.0090 31 1 7.1437 -8.7493 0.0010 32 1 11.5384 -10.1884 0.0019 33 1 10.9682 -6.8008 0.0025 34 1 9.8465 -4.6149 0.0021 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019281057.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:02:37 Heat of formation + Delta-G solvation = -139.298984 kcal Electronic energy + Delta-G solvation = -19973.380644 eV Core-core repulsion = 16450.744177 eV Total energy + Delta-G solvation = -3522.636466 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.90973 -40.16703 -38.91041 -37.35276 -36.38138 -34.45947 -32.49628 -31.59917 -31.00261 -29.32271 -27.20009 -24.59743 -23.28350 -22.06587 -21.42962 -20.17818 -18.74742 -18.41402 -17.51887 -17.47338 -16.48667 -16.37224 -15.91331 -15.69006 -15.21845 -14.84005 -14.42462 -14.31798 -14.07807 -13.84840 -13.28594 -12.99868 -12.84818 -12.65865 -12.41751 -12.23981 -11.90261 -11.29049 -11.28516 -11.09930 -10.96984 -10.83160 -10.04239 -9.59773 -9.48969 -9.42757 -8.86654 -8.66849 -8.34047 -6.28650 -4.32109 0.40451 0.95493 2.22403 2.55575 2.70761 2.93310 3.22233 3.29471 3.36839 3.41212 3.92227 4.27009 4.35824 4.44783 4.69487 4.80605 4.87004 4.96186 5.05824 5.06863 5.10269 5.20599 5.61042 5.77025 5.88337 5.94527 6.12995 6.22488 6.66621 6.94350 6.95574 7.06473 7.26241 7.55826 7.98247 8.34693 8.61324 8.73400 9.30288 10.82999 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.053591 B = 0.002590 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.351878 B =10806.643469 C =11308.547198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.079 3.921 3 Si 0.877 3.123 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.547 4.547 8 H 0.081 0.919 9 C 0.222 3.778 10 N -0.699 5.699 11 C 0.502 3.498 12 O -0.534 6.534 13 C 0.036 3.964 14 O -0.279 6.279 15 C 0.177 3.823 16 C -0.227 4.227 17 C -0.008 4.008 18 C -0.180 4.180 19 C 0.532 3.468 20 O -0.521 6.521 21 O -0.514 6.514 22 C -0.019 4.019 23 C -0.166 4.166 24 H 0.269 0.731 25 H 0.028 0.972 26 H 0.024 0.976 27 H 0.399 0.601 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.142 0.858 31 H 0.141 0.859 32 H 0.413 0.587 33 H 0.145 0.855 34 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.432 -16.948 0.026 25.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.126 4.126 3 Si 0.703 3.297 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.185 1.185 7 C -0.585 4.585 8 H 0.099 0.901 9 C 0.100 3.900 10 N -0.349 5.349 11 C 0.285 3.715 12 O -0.411 6.411 13 C -0.043 4.043 14 O -0.190 6.190 15 C 0.129 3.871 16 C -0.245 4.245 17 C -0.026 4.026 18 C -0.182 4.182 19 C 0.378 3.622 20 O -0.411 6.411 21 O -0.326 6.326 22 C -0.037 4.037 23 C -0.185 4.185 24 H 0.079 0.921 25 H 0.046 0.954 26 H 0.041 0.959 27 H 0.233 0.767 28 H 0.113 0.887 29 H 0.113 0.887 30 H 0.160 0.840 31 H 0.159 0.841 32 H 0.272 0.728 33 H 0.163 0.837 34 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 18.530 -15.799 0.029 24.351 hybrid contribution -0.024 -0.261 -0.022 0.263 sum 18.506 -16.060 0.007 24.503 Atomic orbital electron populations 1.69874 1.06217 1.27560 1.49028 1.24790 0.94811 0.99215 0.93752 0.86817 0.80571 0.83185 0.79133 1.19768 1.20806 1.18468 1.21047 0.88287 0.95329 1.53819 0.90133 1.19563 0.95393 0.77895 0.97109 1.46063 1.04788 1.11578 1.72509 1.19856 0.83723 0.89328 0.78574 1.90716 1.55325 1.45611 1.49483 1.22731 0.79401 0.98091 1.04035 1.86176 1.20305 1.25932 1.86572 1.19520 0.92642 0.84378 0.90579 1.21296 1.00968 0.91635 1.10619 1.21031 0.92514 0.98042 0.91036 1.18886 0.93560 0.90355 1.15388 1.20788 0.80070 0.89571 0.71779 1.90892 1.66011 1.37225 1.47006 1.84563 1.22392 1.39682 1.85982 1.21244 1.00465 0.90186 0.91798 1.20479 0.91327 0.99063 1.07606 0.92143 0.95399 0.95858 0.76748 0.88671 0.88668 0.84026 0.84115 0.72816 0.83728 0.83883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.79 13.96 55.43 0.77 -25.01 16 2 C 0.08 2.16 5.47 -17.82 -0.10 2.06 16 3 Si 0.88 20.88 27.47 -169.99 -4.67 16.21 16 4 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.26 -6.16 6.54 56.52 0.37 -5.79 16 7 C -0.55 -14.43 9.83 -34.44 -0.34 -14.77 16 8 H 0.08 2.20 7.84 -52.48 -0.41 1.78 16 9 C 0.22 5.22 4.50 -5.19 -0.02 5.19 16 10 N -0.70 -13.05 5.55 -61.47 -0.34 -13.40 16 11 C 0.50 8.97 7.91 -10.98 -0.09 8.88 16 12 O -0.53 -11.99 16.50 -14.35 -0.24 -12.22 16 13 C 0.04 0.44 5.21 36.01 0.19 0.63 16 14 O -0.28 -3.86 9.66 -38.69 -0.37 -4.24 16 15 C 0.18 1.98 6.70 -39.00 -0.26 1.72 16 16 C -0.23 -2.14 9.01 -39.50 -0.36 -2.49 16 17 C -0.01 -0.07 9.59 -39.20 -0.38 -0.45 16 18 C -0.18 -1.73 5.87 -104.98 -0.62 -2.35 16 19 C 0.53 5.11 8.26 34.49 0.29 5.39 16 20 O -0.52 -6.42 17.12 -19.26 -0.33 -6.75 16 21 O -0.51 -3.35 12.67 -40.63 -0.51 -3.86 16 22 C -0.02 -0.16 9.61 -39.21 -0.38 -0.54 16 23 C -0.17 -1.64 9.97 -39.50 -0.39 -2.04 16 24 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 25 H 0.03 0.69 7.20 -51.93 -0.37 0.32 16 26 H 0.02 0.57 7.57 -51.93 -0.39 0.18 16 27 H 0.40 6.23 8.32 -40.82 -0.34 5.89 16 28 H 0.10 0.90 7.64 -51.93 -0.40 0.50 16 29 H 0.10 0.90 7.66 -51.93 -0.40 0.50 16 30 H 0.14 1.04 6.28 -52.49 -0.33 0.71 16 31 H 0.14 1.20 7.64 -52.49 -0.40 0.80 16 32 H 0.41 0.88 9.11 45.56 0.42 1.30 16 33 H 0.14 0.94 7.60 -52.48 -0.40 0.54 16 34 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 LS Contribution 308.84 15.07 4.65 4.65 Total: -1.00 -34.92 308.84 -6.11 -41.03 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: -2.62 Total: 2.35 kcal Atomic # 6 Polarization: 3.70 SS G_CDS: -2.45 Total: 1.25 kcal Atomic # 7 Polarization: -38.84 SS G_CDS: 0.43 Total: -38.41 kcal Atomic # 8 Polarization: -25.62 SS G_CDS: -1.46 Total: -27.07 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -4.67 Total: 16.21 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -34.92 -6.11 -41.03 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019281057.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.272 kcal (2) G-P(sol) polarization free energy of solvation -34.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds