Wall clock time and date at job start Fri Apr 10 2020 14:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00096 * 2 1 4 4 H 1.48500 * 109.47087 * 269.99831 * 3 2 1 5 5 H 1.48498 * 109.47300 * 29.99871 * 3 2 1 6 6 H 1.48501 * 109.46957 * 149.99732 * 3 2 1 7 7 C 1.37876 * 120.00037 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99462 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00231 * 180.02562 * 7 2 1 10 10 N 1.46504 * 109.47036 * 180.02562 * 9 7 2 11 11 C 1.34781 * 119.99724 * 180.02562 * 10 9 7 12 12 O 1.21277 * 119.99936 * 359.97438 * 11 10 9 13 13 C 1.50701 * 119.99844 * 180.02562 * 11 10 9 14 14 O 1.42899 * 109.47130 * 179.97438 * 13 11 10 15 15 C 1.35694 * 117.00093 * 179.97438 * 14 13 11 16 16 C 1.39021 * 119.90499 * 0.27444 * 15 14 13 17 17 C 1.37679 * 120.09068 * 180.28089 * 16 15 14 18 18 C 1.39794 * 119.90398 * 359.43972 * 17 16 15 19 19 C 1.47473 * 120.08904 * 180.29757 * 18 17 16 20 20 O 1.21498 * 120.00032 * 0.02562 * 19 18 17 21 21 O 1.34752 * 119.99783 * 180.02562 * 19 18 17 22 22 C 1.39784 * 119.81736 * 0.28441 * 18 17 16 23 23 C 1.37681 * 119.90771 * 359.97438 * 22 18 17 24 24 H 0.97005 * 119.99606 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47024 * 60.00112 * 9 7 2 26 26 H 1.09000 * 109.46964 * 299.99795 * 9 7 2 27 27 H 0.96996 * 120.00047 * 359.97438 * 10 9 7 28 28 H 1.09000 * 109.46919 * 59.99470 * 13 11 10 29 29 H 1.09000 * 109.46708 * 299.99382 * 13 11 10 30 30 H 1.07998 * 119.95278 * 359.97438 * 16 15 14 31 31 H 1.08002 * 120.04953 * 179.72504 * 17 16 15 32 32 H 0.96703 * 116.99904 * 180.02562 * 21 19 18 33 33 H 1.08005 * 120.04680 * 180.02562 * 22 18 17 34 34 H 1.08000 * 119.95490 * 180.02562 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4644 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 3.9998 -2.5754 0.0010 11 6 5.3249 -2.8216 0.0020 12 8 6.1130 -1.8998 0.0025 13 6 5.8272 -4.2425 0.0013 14 8 7.2562 -4.2425 0.0019 15 6 7.8722 -5.4516 0.0020 16 6 7.1131 -6.6162 -0.0044 17 6 7.7341 -7.8450 0.0014 18 6 9.1300 -7.9204 0.0020 19 6 9.7995 -9.2344 0.0016 20 8 9.1377 -10.2534 0.0003 21 8 11.1451 -9.3050 0.0026 22 6 9.8895 -6.7469 0.0025 23 6 9.2605 -5.5221 0.0021 24 1 -0.4850 0.8401 -0.0004 25 1 3.8745 -0.6801 0.8911 26 1 3.8751 -0.6805 -0.8889 27 1 3.3694 -3.3126 0.0010 28 1 5.4645 -4.7556 -0.8894 29 1 5.4631 -4.7569 0.8906 30 1 6.0347 -6.5570 -0.0090 31 1 7.1437 -8.7493 0.0010 32 1 11.5384 -10.1884 0.0019 33 1 10.9682 -6.8008 0.0025 34 1 9.8465 -4.6149 0.0021 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019281057.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:02:36 Heat of formation + Delta-G solvation = -165.165363 kcal Electronic energy + Delta-G solvation = -19974.502294 eV Core-core repulsion = 16450.744177 eV Total energy + Delta-G solvation = -3523.758117 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.70733 -41.06355 -40.18007 -38.22324 -37.05482 -36.20892 -34.45977 -32.34626 -31.82001 -30.74677 -28.66753 -25.35753 -24.45071 -23.50981 -22.16727 -21.64657 -19.61281 -19.29688 -18.99322 -18.21933 -17.90841 -17.48965 -16.93757 -16.63654 -16.62809 -15.95849 -15.83629 -15.48306 -15.01786 -14.75865 -14.52500 -14.34987 -14.26319 -13.73424 -13.52692 -13.46917 -13.08756 -12.72416 -12.59346 -12.15373 -11.99791 -11.93687 -11.73518 -11.66430 -10.93604 -10.92056 -10.17161 -10.03076 -9.45117 -8.40111 -6.47267 -0.33379 0.26823 1.33148 1.35947 1.47592 1.49362 1.54584 1.55444 2.11139 2.28015 2.69950 2.72636 2.95501 3.55494 3.77608 3.79230 4.02725 4.10043 4.10596 4.18712 4.40013 4.51530 4.76350 4.94359 5.00664 5.07485 5.16865 5.24076 5.25920 5.41399 5.52880 5.59161 6.04843 6.19548 6.53367 6.74121 6.98761 7.13372 7.30594 8.74229 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.053591 B = 0.002590 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.351878 B =10806.643469 C =11308.547198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.027 3.973 3 Si 0.935 3.065 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.546 4.546 8 H 0.064 0.936 9 C 0.231 3.769 10 N -0.696 5.696 11 C 0.501 3.499 12 O -0.585 6.585 13 C 0.046 3.954 14 O -0.309 6.309 15 C 0.158 3.842 16 C -0.221 4.221 17 C -0.014 4.014 18 C -0.190 4.190 19 C 0.538 3.462 20 O -0.554 6.554 21 O -0.505 6.505 22 C -0.010 4.010 23 C -0.175 4.175 24 H 0.272 0.728 25 H 0.015 0.985 26 H 0.014 0.986 27 H 0.414 0.586 28 H 0.130 0.870 29 H 0.130 0.870 30 H 0.164 0.836 31 H 0.148 0.852 32 H 0.433 0.567 33 H 0.166 0.834 34 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.807 -18.039 -0.009 26.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.174 4.174 3 Si 0.759 3.241 4 H -0.190 1.190 5 H -0.200 1.200 6 H -0.184 1.184 7 C -0.584 4.584 8 H 0.082 0.918 9 C 0.108 3.892 10 N -0.348 5.348 11 C 0.287 3.713 12 O -0.465 6.465 13 C -0.032 4.032 14 O -0.221 6.221 15 C 0.111 3.889 16 C -0.239 4.239 17 C -0.032 4.032 18 C -0.191 4.191 19 C 0.385 3.615 20 O -0.447 6.447 21 O -0.319 6.319 22 C -0.028 4.028 23 C -0.193 4.193 24 H 0.082 0.918 25 H 0.033 0.967 26 H 0.032 0.968 27 H 0.251 0.749 28 H 0.148 0.852 29 H 0.148 0.852 30 H 0.182 0.818 31 H 0.165 0.835 32 H 0.295 0.705 33 H 0.184 0.816 34 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 19.929 -16.945 -0.007 26.159 hybrid contribution -0.365 -0.038 -0.010 0.367 sum 19.564 -16.982 -0.017 25.907 Atomic orbital electron populations 1.69975 1.07651 1.28608 1.50606 1.25578 0.95520 1.02624 0.93667 0.85892 0.79284 0.79505 0.79428 1.19049 1.19975 1.18425 1.21268 0.89759 0.94716 1.52630 0.91785 1.19148 0.93468 0.80612 0.95980 1.45834 1.05959 1.10207 1.72776 1.20764 0.82588 0.91456 0.76475 1.90690 1.56379 1.47930 1.51497 1.22700 0.79300 0.93837 1.07331 1.86115 1.20828 1.27638 1.87478 1.19706 0.93127 0.83992 0.92053 1.21479 1.02003 0.90834 1.09608 1.21193 0.92724 0.98367 0.90936 1.19099 0.93987 0.90764 1.15292 1.20777 0.80750 0.89058 0.70940 1.90883 1.66886 1.38182 1.48722 1.84518 1.20782 1.41460 1.85147 1.21412 1.01432 0.89284 0.90670 1.20668 0.91244 0.99763 1.07651 0.91848 0.96714 0.96819 0.74889 0.85206 0.85221 0.81842 0.83460 0.70507 0.81639 0.83528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.27 13.96 21.45 0.30 -53.97 16 2 C 0.03 1.47 5.47 84.65 0.46 1.93 16 3 Si 0.94 43.03 27.47 68.60 1.88 44.91 16 4 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 5 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 6 H -0.26 -11.85 6.54 99.48 0.65 -11.20 16 7 C -0.55 -28.89 9.83 25.60 0.25 -28.63 16 8 H 0.06 3.52 7.84 -2.91 -0.02 3.50 16 9 C 0.23 10.82 4.50 85.63 0.38 11.21 16 10 N -0.70 -25.26 5.55 -466.78 -2.59 -27.85 16 11 C 0.50 17.26 7.91 87.66 0.69 17.96 16 12 O -0.58 -26.16 16.50 16.02 0.26 -25.89 16 13 C 0.05 1.00 5.21 71.24 0.37 1.37 16 14 O -0.31 -8.02 9.66 -71.10 -0.69 -8.71 16 15 C 0.16 3.23 6.70 22.64 0.15 3.39 16 16 C -0.22 -3.58 9.01 22.33 0.20 -3.38 16 17 C -0.01 -0.23 9.59 22.51 0.22 -0.02 16 18 C -0.19 -3.26 5.87 -20.09 -0.12 -3.38 16 19 C 0.54 9.33 8.26 70.26 0.58 9.91 16 20 O -0.55 -12.93 17.12 19.84 0.34 -12.59 16 21 O -0.51 -5.34 12.67 -56.62 -0.72 -6.06 16 22 C -0.01 -0.15 9.61 22.51 0.22 0.07 16 23 C -0.17 -3.17 9.97 22.32 0.22 -2.95 16 24 H 0.27 14.85 8.31 -92.70 -0.77 14.08 16 25 H 0.01 0.74 7.20 -2.39 -0.02 0.72 16 26 H 0.01 0.68 7.57 -2.39 -0.02 0.66 16 27 H 0.41 12.30 8.32 -92.71 -0.77 11.53 16 28 H 0.13 1.96 7.64 -2.39 -0.02 1.94 16 29 H 0.13 1.96 7.66 -2.39 -0.02 1.94 16 30 H 0.16 1.80 6.28 -2.91 -0.02 1.78 16 31 H 0.15 2.24 7.64 -2.91 -0.02 2.22 16 32 H 0.43 0.78 9.11 -74.05 -0.67 0.10 16 33 H 0.17 1.71 7.60 -2.91 -0.02 1.68 16 34 H 0.15 2.47 8.06 -2.91 -0.02 2.45 16 Total: -1.00 -76.04 308.84 2.09 -73.94 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -0.33 Total: 8.75 kcal Atomic # 6 Polarization: 3.83 SS G_CDS: 3.63 Total: 7.46 kcal Atomic # 7 Polarization: -79.53 SS G_CDS: -2.29 Total: -81.82 kcal Atomic # 8 Polarization: -52.45 SS G_CDS: -0.80 Total: -53.25 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 1.88 Total: 44.91 kcal Total: -76.04 2.09 -73.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019281057.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.221 kcal (2) G-P(sol) polarization free energy of solvation -76.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds