Wall clock time and date at job start Fri Apr 10 2020 14:02:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30640 * 1 3 3 Si 1.86803 * 119.99850 * 2 1 4 4 H 1.48510 * 109.47148 * 239.99922 * 3 2 1 5 5 H 1.48499 * 109.47211 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47203 * 120.00234 * 3 2 1 7 7 C 1.40121 * 120.00103 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99946 * 179.97438 * 7 2 1 9 9 C 1.46202 * 120.00108 * 359.97438 * 7 2 1 10 10 O 1.21726 * 119.99425 * 359.97438 * 9 7 2 11 11 N 1.34771 * 120.00170 * 179.97438 * 9 7 2 12 12 C 1.39071 * 119.99977 * 185.27935 * 11 9 7 13 13 C 1.39272 * 119.93249 * 213.94198 * 12 11 9 14 14 C 1.37614 * 120.06806 * 180.25894 * 13 12 11 15 15 C 1.39839 * 119.92694 * 359.44512 * 14 13 12 16 16 C 1.47460 * 120.06259 * 180.29959 * 15 14 13 17 17 O 1.21510 * 120.00249 * 0.02562 * 16 15 14 18 18 O 1.34752 * 119.99938 * 180.02562 * 16 15 14 19 19 C 1.45195 * 117.00253 * 180.02562 * 18 16 15 20 20 C 1.53000 * 109.47573 * 179.97438 * 19 18 16 21 21 O 1.42907 * 109.46924 * 64.99650 * 20 19 18 22 22 C 1.39831 * 119.86816 * 0.27906 * 15 14 13 23 23 C 1.37607 * 119.93139 * 0.02562 * 22 15 14 24 24 H 0.96998 * 119.99977 * 0.02562 * 1 2 3 25 25 H 0.97001 * 120.00147 * 5.27717 * 11 9 7 26 26 H 1.08001 * 119.96621 * 0.02562 * 13 12 11 27 27 H 1.07993 * 120.03176 * 179.71858 * 14 13 12 28 28 H 1.09004 * 109.46827 * 299.99847 * 19 18 16 29 29 H 1.09002 * 109.47351 * 59.99670 * 19 18 16 30 30 H 1.08997 * 109.47541 * 184.99767 * 20 19 18 31 31 H 1.08998 * 109.46987 * 304.99984 * 20 19 18 32 32 H 0.96696 * 113.99862 * 180.02562 * 21 20 19 33 33 H 1.08004 * 120.03444 * 180.02562 * 22 15 14 34 34 H 1.08003 * 119.96737 * 180.02562 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 3.0942 1.6965 -1.2126 5 1 1.2754 2.7465 -0.0006 6 1 3.0942 1.6965 1.2125 7 6 2.0070 -1.2135 -0.0005 8 1 3.0870 -1.2134 -0.0010 9 6 1.2761 -2.4796 -0.0005 10 8 0.0588 -2.4796 0.0004 11 7 1.9499 -3.6468 -0.0016 12 6 1.2589 -4.8486 -0.1124 13 6 1.7258 -5.9821 0.5485 14 6 1.0472 -7.1741 0.4364 15 6 -0.1187 -7.2435 -0.3326 16 6 -0.8519 -8.5175 -0.4493 17 8 -0.4434 -9.5083 0.1234 18 8 -1.9750 -8.5831 -1.1911 19 6 -2.6450 -9.8693 -1.2606 20 6 -3.8908 -9.7487 -2.1405 21 8 -3.4991 -9.4533 -3.4828 22 6 -0.5881 -6.1022 -0.9902 23 6 0.0984 -4.9148 -0.8794 24 1 -0.4850 0.8400 -0.0004 25 1 2.9169 -3.6486 0.0749 26 1 2.6234 -5.9266 1.1464 27 1 1.4122 -8.0538 0.9454 28 1 -1.9680 -10.6090 -1.6882 29 1 -2.9375 -10.1813 -0.2580 30 1 -4.4417 -10.6890 -2.1214 31 1 -4.5261 -8.9476 -1.7628 32 1 -4.2399 -9.3623 -4.0976 33 1 -1.4885 -6.1527 -1.5845 34 1 -0.2639 -4.0328 -1.3868 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000025388669.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:02:25 Heat of formation + Delta-G solvation = -175.504111 kcal Electronic energy + Delta-G solvation = -20514.925193 eV Core-core repulsion = 16990.718755 eV Total energy + Delta-G solvation = -3524.206439 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.64376 -40.71687 -38.80267 -38.06732 -37.02796 -35.42317 -34.57132 -32.05787 -31.57614 -30.57231 -28.42716 -25.38193 -23.78860 -23.56146 -22.42769 -21.42830 -19.57577 -19.06912 -18.63330 -18.25578 -17.76384 -17.52344 -17.18059 -16.20761 -15.81493 -15.59374 -15.41201 -15.10892 -14.81595 -14.56927 -14.35191 -14.15068 -13.84346 -13.50220 -13.34296 -13.12278 -12.76646 -12.73367 -12.48699 -12.18909 -12.07565 -11.77475 -11.61533 -11.16285 -10.98583 -10.89623 -10.12799 -9.84970 -8.95485 -8.38810 -6.97023 -0.28186 0.44474 1.39966 1.41613 1.51135 1.56374 1.63654 2.20435 2.35751 2.77877 2.87974 3.28998 3.53912 3.69347 3.89933 3.95477 3.99766 4.13084 4.35911 4.42049 4.44339 4.60381 4.65517 4.69430 5.01961 5.15253 5.24476 5.32859 5.36175 5.38721 5.66851 5.77117 6.12450 6.24228 6.68837 6.76135 6.90247 7.25564 8.29504 8.53991 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.030643 B = 0.003312 C = 0.003054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.535856 B = 8450.871834 C = 9166.846262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.030 3.970 3 Si 1.001 2.999 4 H -0.254 1.254 5 H -0.275 1.275 6 H -0.253 1.253 7 C -0.562 4.562 8 H 0.096 0.904 9 C 0.527 3.473 10 O -0.602 6.602 11 N -0.687 5.687 12 C 0.208 3.792 13 C -0.175 4.175 14 C -0.022 4.022 15 C -0.187 4.187 16 C 0.522 3.478 17 O -0.539 6.539 18 O -0.354 6.354 19 C 0.054 3.946 20 C 0.079 3.921 21 O -0.595 6.595 22 C -0.031 4.031 23 C -0.169 4.169 24 H 0.279 0.721 25 H 0.413 0.587 26 H 0.161 0.839 27 H 0.155 0.845 28 H 0.071 0.929 29 H 0.098 0.902 30 H 0.105 0.895 31 H 0.065 0.935 32 H 0.401 0.599 33 H 0.141 0.859 34 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.397 -14.669 -2.838 15.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.187 4.187 3 Si 0.820 3.180 4 H -0.178 1.178 5 H -0.200 1.200 6 H -0.177 1.177 7 C -0.597 4.597 8 H 0.114 0.886 9 C 0.334 3.666 10 O -0.487 6.487 11 N -0.330 5.330 12 C 0.108 3.892 13 C -0.196 4.196 14 C -0.041 4.041 15 C -0.190 4.190 16 C 0.370 3.630 17 O -0.431 6.431 18 O -0.271 6.271 19 C -0.020 4.020 20 C 0.002 3.998 21 O -0.404 6.404 22 C -0.050 4.050 23 C -0.191 4.191 24 H 0.089 0.911 25 H 0.250 0.750 26 H 0.178 0.822 27 H 0.173 0.827 28 H 0.089 0.911 29 H 0.116 0.884 30 H 0.122 0.878 31 H 0.083 0.917 32 H 0.252 0.748 33 H 0.159 0.841 34 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -2.734 -14.795 -2.438 15.242 hybrid contribution -0.094 0.712 -0.195 0.744 sum -2.829 -14.083 -2.633 14.604 Atomic orbital electron populations 1.70128 1.09547 1.29566 1.34665 1.27000 0.95556 1.05011 0.91115 0.85009 0.78179 0.74422 0.80397 1.17772 1.19992 1.17697 1.21404 0.95178 0.89385 1.53770 0.88583 1.18773 0.87233 0.83693 0.76882 1.90617 1.15543 1.87008 1.55520 1.43794 1.10710 1.03839 1.74634 1.18515 0.92623 0.86969 0.91064 1.21075 1.04326 0.91275 1.02899 1.21133 0.91265 0.97978 0.93713 1.19018 0.99884 0.91284 1.08796 1.21098 0.78660 0.88374 0.74866 1.90767 1.68110 1.37952 1.46286 1.86620 1.37629 1.38088 1.64737 1.23492 0.94584 0.82430 1.01447 1.22345 0.93386 1.02284 0.81771 1.86515 1.39338 1.94630 1.19941 1.21251 0.98072 0.90371 0.95328 1.21129 0.98027 0.98145 1.01771 0.91132 0.75026 0.82158 0.82749 0.91084 0.88361 0.87751 0.91665 0.74840 0.84104 0.87248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -47.14 11.82 21.85 0.26 -46.88 16 2 C 0.03 1.58 5.50 85.33 0.47 2.05 16 3 Si 1.00 38.49 29.56 68.60 2.03 40.51 16 4 H -0.25 -9.19 7.11 99.48 0.71 -8.48 16 5 H -0.28 -10.31 7.11 99.48 0.71 -9.60 16 6 H -0.25 -9.13 7.11 99.48 0.71 -8.43 16 7 C -0.56 -29.80 9.54 24.80 0.24 -29.57 16 8 H 0.10 4.46 7.85 -2.91 -0.02 4.44 16 9 C 0.53 28.87 7.46 86.31 0.64 29.52 16 10 O -0.60 -37.98 12.69 -4.43 -0.06 -38.04 16 11 N -0.69 -29.58 5.30 -307.51 -1.63 -31.21 16 12 C 0.21 8.41 6.27 38.49 0.24 8.65 16 13 C -0.17 -5.56 9.94 22.37 0.22 -5.33 16 14 C -0.02 -0.68 9.58 22.51 0.22 -0.46 16 15 C -0.19 -6.32 5.88 -20.07 -0.12 -6.44 16 16 C 0.52 16.95 7.89 70.25 0.55 17.51 16 17 O -0.54 -18.50 16.13 19.80 0.32 -18.18 16 18 O -0.35 -10.41 9.43 -53.97 -0.51 -10.92 16 19 C 0.05 1.15 5.85 71.98 0.42 1.57 16 20 C 0.08 1.18 7.44 71.98 0.54 1.72 16 21 O -0.59 -11.05 13.63 -145.57 -1.98 -13.03 16 22 C -0.03 -1.14 9.60 22.51 0.22 -0.92 16 23 C -0.17 -7.28 8.62 22.37 0.19 -7.09 16 24 H 0.28 14.70 8.29 -92.71 -0.77 13.94 16 25 H 0.41 14.53 8.79 -92.71 -0.82 13.71 16 26 H 0.16 4.00 8.06 -2.91 -0.02 3.97 16 27 H 0.15 4.04 7.64 -2.91 -0.02 4.02 16 28 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 29 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.40 3.32 9.12 -74.06 -0.68 2.64 16 33 H 0.14 4.72 7.60 -2.91 -0.02 4.70 16 34 H 0.11 5.51 6.41 -2.91 -0.02 5.49 16 Total: -1.00 -77.08 309.78 1.93 -75.15 By element: Atomic # 1 Polarization: 31.72 SS G_CDS: -0.33 Total: 31.39 kcal Atomic # 6 Polarization: 7.36 SS G_CDS: 3.83 Total: 11.20 kcal Atomic # 7 Polarization: -76.72 SS G_CDS: -1.37 Total: -78.09 kcal Atomic # 8 Polarization: -77.93 SS G_CDS: -2.23 Total: -80.16 kcal Atomic # 14 Polarization: 38.49 SS G_CDS: 2.03 Total: 40.51 kcal Total: -77.08 1.93 -75.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000025388669.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.355 kcal (2) G-P(sol) polarization free energy of solvation -77.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds