Wall clock time and date at job start Fri Apr 10 2020 14:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31446 * 1 3 3 Si 1.86802 * 119.99987 * 2 1 4 4 H 1.48494 * 109.46940 * 269.99885 * 3 2 1 5 5 H 1.48498 * 109.47252 * 30.00114 * 3 2 1 6 6 H 1.48502 * 109.46627 * 150.00115 * 3 2 1 7 7 C 1.38748 * 119.99761 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00326 * 179.97438 * 7 2 1 9 9 O 1.34928 * 120.00053 * 359.97438 * 7 2 1 10 10 C 1.34317 * 116.99920 * 180.02562 * 9 7 2 11 11 O 1.21214 * 120.00131 * 0.02562 * 10 9 7 12 12 C 1.50694 * 120.00140 * 180.02562 * 10 9 7 13 13 N 1.46493 * 109.47566 * 179.97438 * 12 10 9 14 14 C 1.34772 * 120.00563 * 180.02562 * 13 12 10 15 15 O 1.21516 * 119.99634 * 359.97438 * 14 13 12 16 16 O 1.34639 * 120.00599 * 180.02562 * 14 13 12 17 17 C 1.45190 * 117.00170 * 179.97438 * 16 14 13 18 18 C 1.50707 * 109.47131 * 179.97438 * 17 16 14 19 19 C 1.38238 * 119.99792 * 90.00017 * 18 17 16 20 20 C 1.38235 * 119.99712 * 179.97438 * 19 18 17 21 21 C 1.38234 * 120.00220 * 359.97124 * 20 19 18 22 22 C 1.38233 * 120.00037 * 0.28719 * 21 20 19 23 23 C 1.38234 * 120.00179 * 269.97954 * 18 17 16 24 24 H 0.97006 * 119.99971 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.47069 * 59.99608 * 12 10 9 26 26 H 1.09000 * 109.47229 * 300.00136 * 12 10 9 27 27 H 0.97006 * 119.99893 * 359.97438 * 13 12 10 28 28 H 1.09005 * 109.47695 * 59.99979 * 17 16 14 29 29 H 1.09000 * 109.47342 * 299.99215 * 17 16 14 30 30 H 1.08005 * 120.00068 * 359.97438 * 19 18 17 31 31 H 1.07999 * 119.99770 * 179.97438 * 20 19 18 32 32 H 1.08002 * 119.99744 * 180.02562 * 21 20 19 33 33 H 1.07998 * 120.00395 * 179.72811 * 22 21 20 34 34 H 1.07999 * 119.99968 * 359.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3145 0.0000 0.0000 3 14 2.2485 1.6178 0.0000 4 1 2.4960 2.0464 -1.4000 5 1 1.4460 2.6527 0.7000 6 1 3.5460 1.4401 0.7000 7 6 2.0081 -1.2016 -0.0005 8 1 3.0881 -1.2017 -0.0010 9 8 1.3335 -2.3701 -0.0005 10 6 2.0650 -3.4966 -0.0005 11 8 3.2755 -3.4332 -0.0001 12 6 1.3809 -4.8393 -0.0011 13 7 2.3897 -5.9015 -0.0016 14 6 2.0076 -7.1939 -0.0027 15 8 0.8262 -7.4781 -0.0028 16 8 2.9348 -8.1701 -0.0026 17 6 2.4508 -9.5390 -0.0033 18 6 3.6229 -10.4863 -0.0037 19 6 4.1605 -10.9213 1.1932 20 6 5.2352 -11.7906 1.1928 21 6 5.7721 -12.2254 -0.0045 22 6 5.2380 -11.7862 -1.2015 23 6 4.1602 -10.9205 -1.2011 24 1 -0.4850 0.8401 0.0004 25 1 0.7583 -4.9295 -0.8913 26 1 0.7577 -4.9300 0.8886 27 1 3.3329 -5.6746 -0.0019 28 1 1.8455 -9.7101 -0.8936 29 1 1.8450 -9.7106 0.8865 30 1 3.7407 -10.5820 2.1287 31 1 5.6555 -12.1302 2.1279 32 1 6.6115 -12.9050 -0.0048 33 1 5.6601 -12.1225 -2.1369 34 1 3.7398 -10.5813 -2.1362 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000031622890.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:00:19 Heat of formation + Delta-G solvation = -132.147483 kcal Electronic energy + Delta-G solvation = -20030.685566 eV Core-core repulsion = 16508.359212 eV Total energy + Delta-G solvation = -3522.326354 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.49036 -39.46511 -39.05325 -36.70737 -35.55575 -34.14969 -32.38196 -32.24997 -31.21904 -28.41312 -26.52193 -25.07733 -22.90148 -21.90627 -21.27836 -20.30604 -18.94214 -17.86999 -17.37301 -16.66183 -16.58069 -16.18699 -15.45795 -15.35406 -15.15334 -14.93388 -14.43705 -13.97600 -13.75224 -13.62186 -13.41113 -13.14718 -12.53779 -12.44598 -12.22271 -11.66505 -11.40588 -11.39946 -11.24196 -10.68276 -10.57880 -10.54403 -10.47260 -9.93770 -9.28286 -9.22731 -9.19216 -9.09924 -8.67456 -6.50310 -4.19345 0.84318 1.09763 2.23829 2.90492 3.03143 3.14888 3.20850 3.36078 3.48296 3.85215 4.22499 4.44047 4.50911 4.61399 4.71748 4.81516 4.96576 5.03352 5.13541 5.23028 5.33957 5.63115 5.72426 5.73968 5.74024 6.10624 6.14102 6.18691 6.25994 6.38083 6.62225 6.65655 7.29621 7.55370 7.82811 8.42176 8.52505 8.97364 9.67278 10.66822 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.041997 B = 0.002597 C = 0.002514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.560176 B =10778.669327 C =11135.439870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.044 3.956 3 Si 0.947 3.053 4 H -0.272 1.272 5 H -0.277 1.277 6 H -0.266 1.266 7 C -0.385 4.385 8 H 0.099 0.901 9 O -0.203 6.203 10 C 0.389 3.611 11 O -0.554 6.554 12 C 0.155 3.845 13 N -0.693 5.693 14 C 0.652 3.348 15 O -0.576 6.576 16 O -0.364 6.364 17 C 0.129 3.871 18 C -0.097 4.097 19 C -0.093 4.093 20 C -0.125 4.125 21 C -0.111 4.111 22 C -0.125 4.125 23 C -0.093 4.093 24 H 0.272 0.728 25 H 0.103 0.897 26 H 0.103 0.897 27 H 0.418 0.582 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.126 0.874 31 H 0.125 0.875 32 H 0.123 0.877 33 H 0.125 0.875 34 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.380 -21.422 -0.005 22.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.161 4.161 3 Si 0.771 3.229 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.190 1.190 7 C -0.461 4.461 8 H 0.116 0.884 9 O -0.109 6.109 10 C 0.235 3.765 11 O -0.453 6.453 12 C 0.031 3.969 13 N -0.355 5.355 14 C 0.404 3.596 15 O -0.466 6.466 16 O -0.279 6.279 17 C 0.054 3.946 18 C -0.097 4.097 19 C -0.111 4.111 20 C -0.143 4.143 21 C -0.129 4.129 22 C -0.143 4.143 23 C -0.111 4.111 24 H 0.082 0.918 25 H 0.121 0.879 26 H 0.121 0.879 27 H 0.256 0.744 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.144 0.856 31 H 0.143 0.857 32 H 0.141 0.859 33 H 0.143 0.857 34 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 6.905 -21.408 0.001 22.494 hybrid contribution 0.742 0.847 -0.010 1.126 sum 7.646 -20.561 -0.009 21.937 Atomic orbital electron populations 1.69998 1.06049 1.28003 1.45519 1.25389 0.95871 0.98981 0.95895 0.85622 0.79018 0.79433 0.78816 1.19775 1.20232 1.19022 1.21270 0.92492 0.79417 1.52901 0.88370 1.83850 1.39106 1.13172 1.74769 1.22806 0.86680 0.87257 0.79756 1.90561 1.15458 1.87588 1.51661 1.20353 0.89161 0.81964 1.05451 1.44333 1.12320 1.01676 1.77212 1.17871 0.83240 0.81834 0.76657 1.91002 1.16386 1.82975 1.56192 1.86306 1.38535 1.15796 1.87218 1.21693 0.93549 0.75582 1.03743 1.19573 0.98032 0.98233 0.93905 1.21143 0.95756 0.96584 0.97620 1.21172 0.96648 0.98118 0.98341 1.21247 0.99557 0.99458 0.92623 1.21172 0.96623 0.98134 0.98345 1.21141 0.95730 0.96618 0.97614 0.91831 0.87929 0.87919 0.74368 0.90110 0.90104 0.85617 0.85718 0.85897 0.85717 0.85620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.67 13.67 55.48 0.76 -23.92 16 2 C 0.04 1.20 5.49 -17.53 -0.10 1.11 16 3 Si 0.95 20.79 29.55 -169.99 -5.02 15.77 16 4 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 5 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 6 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 7 C -0.38 -11.06 9.65 30.92 0.30 -10.77 16 8 H 0.10 2.82 6.86 -52.49 -0.36 2.46 16 9 O -0.20 -5.63 9.75 -20.74 -0.20 -5.83 16 10 C 0.39 9.15 7.97 36.00 0.29 9.44 16 11 O -0.55 -13.96 14.90 -19.05 -0.28 -14.25 16 12 C 0.15 2.85 6.27 -5.20 -0.03 2.82 16 13 N -0.69 -11.77 5.53 -66.47 -0.37 -12.14 16 14 C 0.65 10.77 8.75 54.05 0.47 11.24 16 15 O -0.58 -10.66 16.13 -19.28 -0.31 -10.97 16 16 O -0.36 -5.24 10.25 -40.32 -0.41 -5.65 16 17 C 0.13 1.47 5.60 36.01 0.20 1.68 16 18 C -0.10 -1.00 5.52 -104.62 -0.58 -1.57 16 19 C -0.09 -0.86 9.70 -39.58 -0.38 -1.25 16 20 C -0.12 -1.00 10.05 -39.58 -0.40 -1.40 16 21 C -0.11 -0.84 10.05 -39.58 -0.40 -1.24 16 22 C -0.12 -1.00 10.05 -39.58 -0.40 -1.40 16 23 C -0.09 -0.86 9.70 -39.58 -0.38 -1.25 16 24 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 25 H 0.10 1.78 8.14 -51.93 -0.42 1.36 16 26 H 0.10 1.79 8.14 -51.93 -0.42 1.36 16 27 H 0.42 7.04 7.55 -40.82 -0.31 6.73 16 28 H 0.08 0.87 8.08 -51.93 -0.42 0.45 16 29 H 0.08 0.87 8.08 -51.93 -0.42 0.45 16 30 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 31 H 0.12 0.74 8.06 -52.49 -0.42 0.31 16 32 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 33 H 0.12 0.74 8.06 -52.49 -0.42 0.31 16 34 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 LS Contribution 315.34 15.07 4.75 4.75 Total: -1.00 -33.29 315.34 -6.10 -39.39 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -3.60 Total: 5.44 kcal Atomic # 6 Polarization: 8.81 SS G_CDS: -1.41 Total: 7.41 kcal Atomic # 7 Polarization: -36.44 SS G_CDS: 0.39 Total: -36.05 kcal Atomic # 8 Polarization: -35.49 SS G_CDS: -1.21 Total: -36.70 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -33.29 -6.10 -39.39 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000031622890.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.760 kcal (2) G-P(sol) polarization free energy of solvation -33.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds