Wall clock time and date at job start Fri Apr 10 2020 14:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39620 * 120.13908 * 226.47316 * 3 2 1 5 5 C 1.38161 * 119.82198 * 179.97438 * 4 3 2 6 6 F 1.35094 * 119.94965 * 179.97438 * 5 4 3 7 7 C 1.38600 * 120.09673 * 0.02562 * 5 4 3 8 8 C 1.38302 * 120.28023 * 359.71115 * 7 5 4 9 9 C 1.37981 * 120.17921 * 0.54618 * 8 7 5 10 10 C 1.50703 * 120.05086 * 179.75024 * 9 8 7 11 11 S 1.81401 * 109.47002 * 269.72241 * 10 9 8 12 12 C 1.81397 * 102.99785 * 179.97438 * 11 10 9 13 13 C 1.53007 * 109.47166 * 179.97438 * 12 11 10 14 14 C 1.52996 * 109.47087 * 179.97438 * 13 12 11 15 15 C 1.50705 * 109.46753 * 180.02562 * 14 13 12 16 16 H 1.07991 * 120.00366 * 0.02562 * 15 14 13 17 17 C 1.37882 * 119.99543 * 180.02562 * 15 14 13 18 18 N 1.31517 * 119.99822 * 179.97438 * 17 15 14 19 19 Si 1.86795 * 120.00174 * 359.97438 * 17 15 14 20 20 H 1.48491 * 109.47265 * 90.00062 * 19 17 15 21 21 H 1.48506 * 109.46930 * 210.00432 * 19 17 15 22 22 H 1.48497 * 109.47062 * 329.99539 * 19 17 15 23 23 H 1.08001 * 120.08864 * 359.95499 * 4 3 2 24 24 H 1.07998 * 119.85977 * 179.97438 * 7 5 4 25 25 H 1.08005 * 119.91182 * 180.29599 * 8 7 5 26 26 H 1.09002 * 109.47152 * 149.72342 * 10 9 8 27 27 H 1.09001 * 109.46980 * 29.72442 * 10 9 8 28 28 H 1.09004 * 109.47371 * 299.99984 * 12 11 10 29 29 H 1.09000 * 109.47527 * 60.00229 * 12 11 10 30 30 H 1.08991 * 109.47137 * 300.00517 * 13 12 11 31 31 H 1.09000 * 109.46480 * 60.00238 * 13 12 11 32 32 H 1.09004 * 109.47426 * 299.99978 * 14 13 12 33 33 H 1.09000 * 109.47550 * 60.00271 * 14 13 12 34 34 H 0.96990 * 120.00217 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2686 0.8325 0.8755 5 6 4.6502 0.8275 0.8703 6 9 5.3308 1.6317 1.7159 7 6 5.3390 -0.0007 -0.0019 8 6 4.6491 -0.8303 -0.8671 9 6 3.2693 -0.8307 -0.8753 10 6 2.5205 -1.7318 -1.8232 11 16 2.2196 -0.8536 -3.3817 12 6 1.3248 -2.0798 -4.3748 13 6 0.9914 -1.4826 -5.7434 14 6 0.2372 -2.5170 -6.5812 15 6 -0.0906 -1.9289 -7.9295 16 1 0.2093 -0.9186 -8.1653 17 6 -0.7735 -2.6808 -8.8619 18 7 -1.0601 -2.1674 -10.0384 19 14 -1.2917 -4.4286 -8.4543 20 1 -2.6442 -4.4137 -7.8416 21 1 -1.3204 -5.2392 -9.6982 22 1 -0.3220 -5.0222 -7.4991 23 1 2.7321 1.4784 1.5547 24 1 6.4189 -0.0012 -0.0030 25 1 5.1918 -1.4768 -1.5409 26 1 1.5678 -2.0170 -1.3771 27 1 3.1125 -2.6260 -2.0184 28 1 1.9471 -2.9651 -4.5061 29 1 0.4020 -2.3568 -3.8651 30 1 0.3690 -0.5976 -5.6117 31 1 1.9140 -1.2054 -6.2533 32 1 0.8600 -3.4019 -6.7129 33 1 -0.6854 -2.7947 -6.0715 34 1 -1.5402 -2.6964 -10.6944 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161718505.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:02:39 Heat of formation + Delta-G solvation = -27.158113 kcal Electronic energy + Delta-G solvation = -17445.938864 eV Core-core repulsion = 14383.290852 eV Total energy + Delta-G solvation = -3062.648013 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.079 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.92907 -40.60762 -37.55589 -36.41638 -34.17537 -33.73172 -32.57937 -29.96022 -28.17592 -25.27954 -25.01279 -23.04349 -21.94882 -20.24310 -18.98157 -17.84808 -17.41291 -17.20133 -16.71363 -16.48190 -16.36255 -16.29825 -15.40495 -15.06674 -14.97151 -14.88482 -14.49135 -14.29836 -14.17794 -13.96767 -13.76610 -13.44453 -13.12063 -12.91445 -12.84787 -12.68591 -12.28787 -11.84359 -11.62196 -11.57861 -11.38054 -10.98243 -10.78561 -10.18274 -9.66872 -8.70306 -8.30978 -6.36294 -0.55754 -0.08148 0.82527 1.35801 1.37616 1.49519 1.49966 1.57877 1.80683 2.35177 2.59077 2.71124 3.04234 3.20665 3.47266 3.60363 3.88195 4.00601 4.02250 4.04718 4.28339 4.38523 4.52887 4.60811 4.73928 4.82227 4.83912 4.92170 4.97932 5.09340 5.22730 5.42125 5.50406 5.62628 5.67996 6.25463 6.32503 6.71696 7.28245 8.86159 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.035411 B = 0.002879 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.535818 B = 9723.007680 C = 9993.874068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C 0.270 3.730 3 C 0.001 3.999 4 C -0.104 4.104 5 C 0.097 3.903 6 F -0.137 7.137 7 C -0.108 4.108 8 C -0.064 4.064 9 C -0.038 4.038 10 C -0.051 4.051 11 S -0.284 6.284 12 C -0.072 4.072 13 C -0.079 4.079 14 C -0.004 4.004 15 C -0.537 4.537 16 H 0.028 0.972 17 C 0.001 3.999 18 N -0.953 5.953 19 Si 0.955 3.045 20 H -0.269 1.269 21 H -0.283 1.283 22 H -0.240 1.240 23 H 0.158 0.842 24 H 0.175 0.825 25 H 0.174 0.826 26 H 0.082 0.918 27 H 0.130 0.870 28 H 0.099 0.901 29 H 0.079 0.921 30 H 0.045 0.955 31 H 0.057 0.943 32 H 0.030 0.970 33 H 0.020 0.980 34 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.573 -0.050 26.396 31.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.122 5.122 2 C -0.045 4.045 3 C -0.004 4.004 4 C -0.125 4.125 5 C 0.077 3.923 6 F -0.115 7.115 7 C -0.127 4.127 8 C -0.083 4.083 9 C -0.042 4.042 10 C -0.198 4.198 11 S -0.054 6.054 12 C -0.220 4.220 13 C -0.118 4.118 14 C -0.044 4.044 15 C -0.575 4.575 16 H 0.046 0.954 17 C -0.195 4.195 18 N -0.593 5.593 19 Si 0.778 3.222 20 H -0.194 1.194 21 H -0.209 1.209 22 H -0.163 1.163 23 H 0.175 0.825 24 H 0.192 0.808 25 H 0.191 0.809 26 H 0.101 0.899 27 H 0.149 0.851 28 H 0.118 0.882 29 H 0.098 0.902 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.048 0.952 33 H 0.038 0.962 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 15.020 0.964 25.968 30.015 hybrid contribution -0.680 -1.212 -0.089 1.393 sum 14.340 -0.248 25.879 29.588 Atomic orbital electron populations 1.81308 1.13271 1.08614 1.09023 1.25756 0.92834 0.93157 0.92787 1.15591 0.83446 1.00924 1.00432 1.21153 0.93000 0.99072 0.99259 1.17532 0.89282 0.93246 0.92262 1.91544 1.79679 1.71359 1.68929 1.21710 1.03024 0.94170 0.93773 1.21161 0.91283 0.98181 0.97719 1.19380 0.94610 0.95980 0.94209 1.22410 1.03608 1.00517 0.93241 1.87283 1.75509 1.28144 1.14422 1.23424 1.02038 0.99202 0.97344 1.21034 0.99927 0.98391 0.92465 1.19502 0.95855 0.95673 0.93327 1.21487 1.36327 1.00319 0.99389 0.95368 1.26093 0.95326 1.03647 0.94458 1.70077 1.42204 1.39662 1.07396 0.85588 0.79676 0.78602 0.78352 1.19408 1.20897 1.16261 0.82464 0.80785 0.80868 0.89902 0.85145 0.88228 0.90192 0.93664 0.92463 0.95167 0.96179 0.92428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -12.52 18.54 19.00 0.35 -12.17 16 2 C 0.27 5.98 13.80 88.33 1.22 7.20 16 3 C 0.00 0.02 5.73 -21.37 -0.12 -0.10 16 4 C -0.10 -1.28 9.73 22.59 0.22 -1.06 16 5 C 0.10 1.05 7.29 22.34 0.16 1.22 16 6 F -0.14 -1.74 17.26 44.97 0.78 -0.96 16 7 C -0.11 -0.79 10.02 22.37 0.22 -0.56 16 8 C -0.06 -0.54 9.68 22.22 0.22 -0.33 16 9 C -0.04 -0.53 5.17 -19.59 -0.10 -0.63 16 10 C -0.05 -0.85 5.67 71.24 0.40 -0.45 16 11 S -0.28 -7.40 21.72 -56.49 -1.23 -8.63 16 12 C -0.07 -2.12 5.94 71.98 0.43 -1.69 16 13 C -0.08 -3.12 5.16 30.60 0.16 -2.96 16 14 C 0.00 -0.21 4.04 29.85 0.12 -0.09 16 15 C -0.54 -31.52 9.66 25.60 0.25 -31.27 16 16 H 0.03 1.83 7.99 -2.92 -0.02 1.81 16 17 C 0.00 0.08 5.47 84.66 0.46 0.54 16 18 N -0.95 -60.66 13.96 21.45 0.30 -60.36 16 19 Si 0.96 44.03 27.47 68.60 1.88 45.91 16 20 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 21 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 22 H -0.24 -9.95 6.54 99.48 0.65 -9.30 16 23 H 0.16 1.54 8.06 -2.91 -0.02 1.51 16 24 H 0.17 0.34 8.06 -2.91 -0.02 0.32 16 25 H 0.17 0.65 8.06 -2.91 -0.02 0.63 16 26 H 0.08 1.53 7.09 -2.39 -0.02 1.52 16 27 H 0.13 1.47 8.08 -2.39 -0.02 1.45 16 28 H 0.10 2.52 8.14 -2.39 -0.02 2.51 16 29 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 30 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.03 1.32 7.20 -2.38 -0.02 1.31 16 33 H 0.02 0.90 7.57 -2.39 -0.02 0.88 16 34 H 0.27 15.77 8.31 -92.72 -0.77 15.00 16 Total: -1.00 -72.47 320.04 6.77 -65.70 By element: Atomic # 1 Polarization: -0.36 SS G_CDS: 1.05 Total: 0.69 kcal Atomic # 6 Polarization: -33.81 SS G_CDS: 3.64 Total: -30.18 kcal Atomic # 7 Polarization: -73.19 SS G_CDS: 0.65 Total: -72.53 kcal Atomic # 9 Polarization: -1.74 SS G_CDS: 0.78 Total: -0.96 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 1.88 Total: 45.91 kcal Atomic # 16 Polarization: -7.40 SS G_CDS: -1.23 Total: -8.63 kcal Total: -72.47 6.77 -65.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161718505.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.543 kcal (2) G-P(sol) polarization free energy of solvation -72.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds