Wall clock time and date at job start Fri Apr 10 2020 14:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86801 * 119.99669 * 2 1 4 4 H 1.48505 * 109.46719 * 239.99995 * 3 2 1 5 5 H 1.48500 * 109.47137 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46867 * 120.00014 * 3 2 1 7 7 C 1.38951 * 119.99993 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99837 * 179.97438 * 7 2 1 9 9 N 1.37100 * 119.99671 * 359.97438 * 7 2 1 10 10 C 1.34779 * 119.99281 * 179.97438 * 9 7 2 11 11 O 1.21289 * 120.00402 * 0.02562 * 10 9 7 12 12 C 1.50698 * 119.99613 * 179.97438 * 10 9 7 13 13 O 1.45200 * 109.47066 * 180.02562 * 12 10 9 14 14 C 1.34716 * 117.00111 * 180.02562 * 13 12 10 15 15 O 1.21474 * 119.99827 * 0.02562 * 14 13 12 16 16 C 1.47722 * 120.00040 * 179.97438 * 14 13 12 17 17 C 1.39632 * 120.14800 * 180.02562 * 16 14 13 18 18 C 1.37951 * 119.84462 * 180.02562 * 17 16 14 19 19 C 1.38361 * 120.15096 * 0.02562 * 18 17 16 20 20 C 1.50699 * 119.84760 * 179.97438 * 19 18 17 21 21 O 1.42903 * 109.47152 * 90.00478 * 20 19 18 22 22 C 1.38377 * 120.30515 * 0.23440 * 19 18 17 23 23 C 1.37937 * 120.14653 * 359.49016 * 22 19 18 24 24 H 0.97003 * 120.00126 * 359.97438 * 1 2 3 25 25 H 0.96989 * 120.00468 * 0.02562 * 9 7 2 26 26 H 1.09004 * 109.46995 * 60.00590 * 12 10 9 27 27 H 1.08994 * 109.47503 * 300.00358 * 12 10 9 28 28 H 1.07998 * 120.07889 * 359.97438 * 17 16 14 29 29 H 1.07998 * 119.92342 * 180.02562 * 18 17 16 30 30 H 1.08997 * 109.47198 * 330.00156 * 20 19 18 31 31 H 1.09008 * 109.47393 * 209.99873 * 20 19 18 32 32 H 0.96700 * 114.00311 * 180.02562 * 21 20 19 33 33 H 1.08002 * 119.92209 * 179.71874 * 22 19 18 34 34 H 1.07999 * 120.07736 * 180.26129 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1018 1.6964 -1.2126 5 1 1.2830 2.7465 -0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2033 0.0001 9 7 1.3234 -2.3906 0.0016 10 6 1.9973 -3.5578 0.0016 11 8 3.2102 -3.5578 0.0011 12 6 1.2438 -4.8629 0.0034 13 8 2.1874 -5.9665 0.0036 14 6 1.6725 -7.2114 0.0046 15 8 0.4683 -7.3706 0.0047 16 6 2.5724 -8.3829 0.0043 17 6 2.0421 -9.6746 0.0048 18 6 2.8882 -10.7641 0.0051 19 6 4.2594 -10.5791 0.0055 20 6 5.1774 -11.7742 0.0064 21 8 5.4682 -12.1526 -1.3407 22 6 4.7917 -9.3019 0.0104 23 6 3.9572 -8.2036 0.0044 24 1 -0.4850 0.8401 0.0004 25 1 0.3535 -2.3907 0.0016 26 1 0.6162 -4.9213 -0.8860 27 1 0.6182 -4.9201 0.8940 28 1 0.9720 -9.8203 0.0058 29 1 2.4794 -11.7637 0.0050 30 1 4.6928 -12.6043 0.5204 31 1 6.1045 -11.5200 0.5204 32 1 6.0551 -12.9174 -1.4165 33 1 5.8630 -9.1646 0.0153 34 1 4.3738 -7.2072 0.0040 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731236226.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:00:25 Heat of formation + Delta-G solvation = -145.189398 kcal Electronic energy + Delta-G solvation = -20158.875271 eV Core-core repulsion = 16635.983377 eV Total energy + Delta-G solvation = -3522.891894 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.51790 -39.25736 -38.08287 -36.91008 -36.04223 -33.99678 -32.26458 -31.37460 -31.23681 -28.57816 -26.78754 -24.63327 -22.92051 -22.78121 -20.66259 -19.57454 -18.08055 -18.05077 -17.85817 -16.83630 -16.28352 -16.00306 -15.62756 -15.53955 -14.76820 -14.39433 -14.12515 -14.09665 -13.92816 -13.61690 -13.38603 -12.93036 -12.68570 -12.21636 -12.02628 -11.61529 -11.56416 -11.31698 -11.10904 -10.51217 -10.48651 -10.45989 -10.40961 -10.28264 -9.59173 -9.19950 -9.17662 -8.52086 -8.07897 -6.49360 -3.91508 0.48016 1.17202 2.49072 2.68249 3.15929 3.23204 3.27960 3.52273 3.74541 4.05048 4.12042 4.47600 4.55334 4.64939 4.78025 4.85671 4.96848 5.06740 5.15636 5.18687 5.37682 5.49999 5.60533 5.70586 5.79222 6.00754 6.07593 6.16612 6.25913 6.58791 6.61893 7.18413 7.48079 7.83041 7.96125 8.48992 9.07355 9.39736 9.89625 10.67797 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.040264 B = 0.002847 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.238919 B = 9832.759323 C =10436.066683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.025 3.975 3 Si 0.935 3.065 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.303 4.303 8 H 0.106 0.894 9 N -0.552 5.552 10 C 0.439 3.561 11 O -0.576 6.576 12 C 0.061 3.939 13 O -0.320 6.320 14 C 0.504 3.496 15 O -0.511 6.511 16 C -0.113 4.113 17 C -0.059 4.059 18 C -0.115 4.115 19 C -0.066 4.066 20 C 0.114 3.886 21 O -0.566 6.566 22 C -0.113 4.113 23 C -0.059 4.059 24 H 0.274 0.726 25 H 0.395 0.605 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.140 0.860 29 H 0.132 0.868 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.381 0.619 33 H 0.132 0.868 34 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.071 -21.998 0.984 22.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.178 4.178 3 Si 0.761 3.239 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.432 4.432 8 H 0.123 0.877 9 N -0.190 5.190 10 C 0.224 3.776 11 O -0.460 6.460 12 C -0.016 4.016 13 O -0.235 6.235 14 C 0.348 3.652 15 O -0.401 6.401 16 C -0.114 4.114 17 C -0.077 4.077 18 C -0.133 4.133 19 C -0.066 4.066 20 C 0.037 3.963 21 O -0.372 6.372 22 C -0.131 4.131 23 C -0.077 4.077 24 H 0.084 0.916 25 H 0.229 0.771 26 H 0.106 0.894 27 H 0.106 0.894 28 H 0.158 0.842 29 H 0.149 0.851 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.229 0.771 33 H 0.150 0.850 34 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 5.998 -21.313 0.862 22.158 hybrid contribution -0.129 0.440 0.152 0.483 sum 5.869 -20.873 1.014 21.706 Atomic orbital electron populations 1.69609 1.06000 1.28598 1.49579 1.25317 0.95691 0.99873 0.96876 0.85853 0.78746 0.80061 0.79192 1.19748 1.20869 1.19749 1.19676 0.93452 0.81759 1.48308 0.87657 1.41693 1.09383 1.04067 1.63809 1.19297 0.88325 0.84043 0.85976 1.90554 1.13399 1.86790 1.55291 1.22779 0.90831 0.84396 1.03636 1.86585 1.40028 1.13868 1.82989 1.21226 0.87137 0.83811 0.72989 1.90814 1.16039 1.86990 1.46258 1.19215 0.93212 0.91185 1.07802 1.21263 1.00956 0.90365 0.95109 1.20953 0.92430 0.98919 1.00959 1.19894 0.93980 0.94315 0.98424 1.21034 0.97022 0.94230 0.84054 1.86586 1.71422 1.53121 1.26051 1.21076 1.00396 0.91367 1.00254 1.21673 0.91962 1.00538 0.93560 0.91566 0.77131 0.89403 0.89413 0.84230 0.85061 0.92432 0.92316 0.77144 0.84964 0.83396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.18 13.05 55.50 0.72 -23.46 16 2 C 0.02 0.66 5.50 -17.47 -0.10 0.56 16 3 Si 0.93 20.78 29.55 -169.99 -5.02 15.75 16 4 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 5 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 6 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 7 C -0.30 -8.39 9.68 -14.93 -0.14 -8.53 16 8 H 0.11 3.03 7.16 -52.49 -0.38 2.66 16 9 N -0.55 -14.06 5.29 -10.96 -0.06 -14.12 16 10 C 0.44 10.67 7.86 -10.99 -0.09 10.59 16 11 O -0.58 -16.03 16.08 -14.11 -0.23 -16.26 16 12 C 0.06 1.19 5.95 36.00 0.21 1.41 16 13 O -0.32 -6.17 9.01 -47.21 -0.43 -6.60 16 14 C 0.50 8.62 7.90 34.61 0.27 8.90 16 15 O -0.51 -9.40 16.14 -19.25 -0.31 -9.71 16 16 C -0.11 -1.60 5.87 -104.98 -0.62 -2.22 16 17 C -0.06 -0.70 9.60 -39.17 -0.38 -1.07 16 18 C -0.11 -1.13 9.68 -39.64 -0.38 -1.51 16 19 C -0.07 -0.65 5.52 -104.53 -0.58 -1.22 16 20 C 0.11 0.78 7.16 36.01 0.26 1.04 16 21 O -0.57 -4.42 13.64 -35.23 -0.48 -4.90 16 22 C -0.11 -1.20 9.68 -39.64 -0.38 -1.59 16 23 C -0.06 -0.77 9.62 -39.17 -0.38 -1.14 16 24 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 25 H 0.40 9.54 7.90 -40.82 -0.32 9.21 16 26 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 27 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 28 H 0.14 1.55 7.65 -52.49 -0.40 1.15 16 29 H 0.13 0.96 8.06 -52.49 -0.42 0.53 16 30 H 0.06 0.29 8.08 -51.93 -0.42 -0.13 16 31 H 0.06 0.31 8.08 -51.92 -0.42 -0.11 16 32 H 0.38 1.03 9.12 45.56 0.42 1.44 16 33 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 34 H 0.15 2.00 7.61 -52.49 -0.40 1.60 16 LS Contribution 314.39 15.07 4.74 4.74 Total: -1.00 -34.21 314.39 -6.11 -40.31 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -2.75 Total: 9.04 kcal Atomic # 6 Polarization: 7.50 SS G_CDS: -2.29 Total: 5.20 kcal Atomic # 7 Polarization: -38.25 SS G_CDS: 0.67 Total: -37.58 kcal Atomic # 8 Polarization: -36.02 SS G_CDS: -1.44 Total: -37.46 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -34.21 -6.11 -40.31 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731236226.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.877 kcal (2) G-P(sol) polarization free energy of solvation -34.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds