Wall clock time and date at job start Fri Apr 10 2020 14:01:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 119.99721 * 2 1 4 4 H 1.48499 * 109.47292 * 240.00254 * 3 2 1 5 5 H 1.48504 * 109.47000 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47083 * 120.00186 * 3 2 1 7 7 C 1.37874 * 120.00363 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00214 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99809 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47070 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47396 * 179.97438 * 10 9 7 12 12 O 1.45199 * 109.47669 * 180.02562 * 11 10 9 13 13 C 1.34705 * 117.00434 * 180.02562 * 12 11 10 14 14 O 1.21470 * 119.99965 * 359.97438 * 13 12 11 15 15 C 1.47726 * 120.00320 * 179.97438 * 13 12 11 16 16 C 1.39631 * 120.15220 * 179.97438 * 15 13 12 17 17 C 1.37942 * 119.84621 * 180.02562 * 16 15 13 18 18 C 1.38367 * 120.15190 * 0.02562 * 17 16 15 19 19 N 1.48020 * 119.84785 * 179.97438 * 18 17 16 20 20 O 1.21803 * 119.99894 * 359.97438 * 19 18 17 21 21 O 1.21799 * 119.99903 * 179.72403 * 19 18 17 22 22 C 1.38365 * 120.30270 * 0.24919 * 18 17 16 23 23 C 1.37945 * 120.15113 * 359.49762 * 22 18 17 24 24 H 0.96989 * 120.00245 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.46699 * 59.99985 * 9 7 2 26 26 H 1.09000 * 109.46834 * 299.99507 * 9 7 2 27 27 H 1.09001 * 109.47494 * 59.99559 * 10 9 7 28 28 H 1.09007 * 109.47139 * 300.00206 * 10 9 7 29 29 H 1.08996 * 109.47132 * 59.99866 * 11 10 9 30 30 H 1.09007 * 109.47201 * 300.00237 * 11 10 9 31 31 H 1.08000 * 120.07510 * 359.97438 * 16 15 13 32 32 H 1.07998 * 119.92143 * 179.97438 * 17 16 15 33 33 H 1.07999 * 119.92169 * 179.74829 * 22 18 17 34 34 H 1.07997 * 120.07773 * 180.23196 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 6 2.2454 -3.6620 -0.0027 11 6 1.4806 -4.9871 -0.0033 12 8 2.4241 -6.0907 -0.0037 13 6 1.9093 -7.3355 -0.0047 14 8 0.7051 -7.4947 -0.0048 15 6 2.8092 -8.5070 -0.0057 16 6 2.2790 -9.7987 -0.0062 17 6 3.1251 -10.8882 -0.0066 18 6 4.4963 -10.7032 -0.0060 19 7 5.3981 -11.8770 -0.0059 20 8 4.9325 -13.0026 -0.0059 21 8 6.6055 -11.7173 -0.0104 22 6 5.0285 -9.4260 0.0003 23 6 4.1940 -8.3276 -0.0045 24 1 -0.4850 0.8399 0.0004 25 1 0.6248 -2.5563 -0.8920 26 1 0.6242 -2.5575 0.8881 27 1 2.8722 -3.6051 0.8872 28 1 2.8721 -3.6035 -0.8927 29 1 0.8536 -5.0443 -0.8930 30 1 0.8541 -5.0454 0.8869 31 1 1.2088 -9.9445 -0.0055 32 1 2.7163 -11.8878 -0.0066 33 1 6.0997 -9.2887 0.0049 34 1 4.6106 -7.3312 -0.0034 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000747661437.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:01:09 Heat of formation + Delta-G solvation = -76.612289 kcal Electronic energy + Delta-G solvation = -19894.860664 eV Core-core repulsion = 16374.942496 eV Total energy + Delta-G solvation = -3519.918167 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.59296 -40.87988 -39.34457 -36.96756 -36.75802 -34.15526 -32.83515 -32.04907 -31.72193 -27.96668 -26.91443 -24.23922 -23.65668 -23.02911 -21.29829 -20.49815 -19.84367 -19.06971 -18.22984 -17.93085 -17.22397 -16.60931 -16.29551 -15.60883 -15.49916 -14.54583 -14.46143 -14.43663 -14.31314 -13.58042 -13.22629 -12.35018 -12.30839 -12.17068 -12.01956 -11.91817 -11.61846 -11.51652 -11.04676 -10.96554 -10.79127 -10.64897 -10.59461 -10.21222 -10.00717 -9.86783 -9.63085 -9.27481 -8.46312 -6.11166 -4.14886 -0.88531 0.37337 0.63571 0.91905 2.01070 2.37512 2.91511 3.27025 3.31934 3.33940 3.78661 3.90164 4.11312 4.25339 4.34697 4.43681 4.72524 5.07700 5.12775 5.14821 5.24811 5.38836 5.40125 5.44325 5.64269 5.82331 5.95574 6.17725 6.38212 6.60908 6.83450 7.21308 7.48337 7.50401 7.59701 7.86101 8.26223 8.90969 9.49936 11.00164 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.040159 B = 0.002505 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.067175 B =11174.104904 C =11845.421197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.524 4.524 8 H 0.057 0.943 9 C 0.024 3.976 10 C -0.109 4.109 11 C 0.068 3.932 12 O -0.349 6.349 13 C 0.499 3.501 14 O -0.493 6.493 15 C -0.066 4.066 16 C -0.058 4.058 17 C -0.066 4.066 18 C -0.021 4.021 19 N 0.024 4.976 20 O -0.155 6.155 21 O -0.152 6.152 22 C -0.066 4.066 23 C -0.061 4.061 24 H 0.263 0.737 25 H 0.020 0.980 26 H 0.020 0.980 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.163 0.837 32 H 0.163 0.837 33 H 0.163 0.837 34 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.497 -20.945 -0.004 22.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.724 3.276 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.562 4.562 8 H 0.075 0.925 9 C -0.013 4.013 10 C -0.147 4.147 11 C -0.004 4.004 12 O -0.265 6.265 13 C 0.342 3.658 14 O -0.381 6.381 15 C -0.067 4.067 16 C -0.077 4.077 17 C -0.084 4.084 18 C -0.103 4.103 19 N 0.545 4.455 20 O -0.371 6.371 21 O -0.369 6.369 22 C -0.085 4.085 23 C -0.079 4.079 24 H 0.073 0.927 25 H 0.038 0.962 26 H 0.038 0.962 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.181 0.819 32 H 0.180 0.820 33 H 0.181 0.819 34 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 6.523 -20.239 0.001 21.264 hybrid contribution 0.466 0.674 0.000 0.820 sum 6.989 -19.564 0.001 20.775 Atomic orbital electron populations 1.69945 1.06104 1.27006 1.50235 1.25029 0.94892 0.99414 0.95081 0.86593 0.79537 0.82808 0.78698 1.20144 1.21220 1.20150 1.21109 0.93077 0.90621 1.51435 0.92451 1.19051 0.93797 0.90659 0.97755 1.21800 1.00050 0.90712 1.02136 1.23668 0.91106 0.83012 1.02612 1.86532 1.42684 1.14537 1.82751 1.20847 0.86901 0.84078 0.73983 1.90876 1.15755 1.86958 1.44551 1.19766 0.93593 0.92314 1.01025 1.21359 1.01833 0.89278 0.95182 1.21015 0.89855 1.01814 0.95760 1.21440 0.90619 0.86141 1.12150 1.43641 1.01690 1.02423 0.97731 1.94558 1.80177 1.09353 1.53039 1.94565 0.96849 1.92631 1.52902 1.21110 1.02932 0.89062 0.95364 1.21659 0.91468 1.00266 0.94550 0.92748 0.96186 0.96174 0.91979 0.91972 0.91045 0.91051 0.81937 0.81958 0.81932 0.81538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.13 13.29 55.43 0.74 -25.39 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.52 -14.23 9.11 -34.44 -0.31 -14.54 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 10 C -0.11 -2.08 5.53 -26.74 -0.15 -2.22 16 11 C 0.07 1.12 5.47 37.15 0.20 1.33 16 12 O -0.35 -4.92 9.47 -40.50 -0.38 -5.30 16 13 C 0.50 6.42 7.90 34.61 0.27 6.70 16 14 O -0.49 -7.57 16.14 -19.24 -0.31 -7.88 16 15 C -0.07 -0.61 5.87 -104.98 -0.62 -1.23 16 16 C -0.06 -0.44 9.60 -39.17 -0.38 -0.82 16 17 C -0.07 -0.47 9.54 -39.64 -0.38 -0.84 16 18 C -0.02 -0.18 6.86 -79.85 -0.55 -0.72 16 19 N 0.02 0.25 4.45 34.01 0.15 0.41 16 20 O -0.15 -1.72 18.43 -29.46 -0.54 -2.26 16 21 O -0.15 -1.71 18.43 -29.46 -0.54 -2.25 16 22 C -0.07 -0.47 9.54 -39.64 -0.38 -0.85 16 23 C -0.06 -0.46 9.62 -39.17 -0.38 -0.84 16 24 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 25 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 28 H 0.06 1.15 8.14 -51.92 -0.42 0.72 16 29 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 30 H 0.07 1.18 8.14 -51.92 -0.42 0.75 16 31 H 0.16 1.10 7.65 -52.49 -0.40 0.69 16 32 H 0.16 0.86 7.60 -52.49 -0.40 0.46 16 33 H 0.16 0.91 7.60 -52.49 -0.40 0.51 16 34 H 0.17 1.09 7.61 -52.49 -0.40 0.69 16 LS Contribution 315.89 15.07 4.76 4.76 Total: -1.00 -30.94 315.89 -7.72 -38.66 By element: Atomic # 1 Polarization: -0.95 SS G_CDS: -3.68 Total: -4.63 kcal Atomic # 6 Polarization: -9.20 SS G_CDS: -2.89 Total: -12.09 kcal Atomic # 7 Polarization: -25.88 SS G_CDS: 0.89 Total: -24.99 kcal Atomic # 8 Polarization: -15.91 SS G_CDS: -1.78 Total: -17.69 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.94 -7.72 -38.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747661437.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.947 kcal (2) G-P(sol) polarization free energy of solvation -30.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds