Wall clock time and date at job start Fri Apr 10 2020 14:01:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00043 * 2 1 4 4 H 1.48495 * 109.46971 * 269.99653 * 3 2 1 5 5 H 1.48507 * 109.46948 * 30.00004 * 3 2 1 6 6 H 1.48500 * 109.46860 * 149.99584 * 3 2 1 7 7 C 1.38707 * 119.99809 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99980 * 0.02562 * 7 2 1 9 9 O 1.34808 * 119.99753 * 180.02562 * 7 2 1 10 10 C 1.35505 * 117.00005 * 185.05319 * 9 7 2 11 11 C 1.38833 * 120.16554 * 354.39310 * 10 9 7 12 12 C 1.38019 * 120.07810 * 179.97438 * 11 10 9 13 13 C 1.38589 * 120.41482 * 359.97438 * 12 11 10 14 14 C 1.37796 * 120.33448 * 359.97438 * 13 12 11 15 15 C 1.39734 * 119.91208 * 0.02562 * 14 13 12 16 16 C 1.47399 * 120.20356 * 179.97438 * 15 14 13 17 17 O 1.21508 * 119.99678 * 180.02562 * 16 15 14 18 18 O 1.34758 * 119.99862 * 0.02562 * 16 15 14 19 19 C 1.45202 * 116.99794 * 179.97438 * 18 16 15 20 20 C 1.52999 * 109.46923 * 179.97438 * 19 18 16 21 21 C 1.50698 * 109.46993 * 180.02562 * 20 19 18 22 22 N 1.34770 * 120.00233 * 180.02562 * 21 20 19 23 23 O 1.21285 * 120.00043 * 359.97438 * 21 20 19 24 24 H 0.97001 * 120.00089 * 0.02562 * 1 2 3 25 25 H 1.08000 * 119.96316 * 359.95475 * 11 10 9 26 26 H 1.08000 * 119.79245 * 180.02562 * 12 11 10 27 27 H 1.08005 * 119.83090 * 180.02562 * 13 12 11 28 28 H 1.08002 * 120.04765 * 179.74218 * 14 13 12 29 29 H 1.09007 * 109.47009 * 299.99988 * 19 18 16 30 30 H 1.08997 * 109.47259 * 59.99654 * 19 18 16 31 31 H 1.08994 * 109.47038 * 299.99948 * 20 19 18 32 32 H 1.09005 * 109.47262 * 60.00064 * 20 19 18 33 33 H 0.96998 * 120.00377 * 359.97438 * 22 21 20 34 34 H 0.97001 * 120.00677 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0086 -1.2013 0.0005 8 1 1.4686 -2.1366 0.0005 9 8 3.3567 -1.2012 0.0011 10 6 3.9720 -2.4039 -0.1048 11 6 3.2243 -3.5737 -0.0905 12 6 3.8528 -4.7977 -0.1990 13 6 5.2312 -4.8700 -0.3232 14 6 5.9898 -3.7198 -0.3404 15 6 5.3678 -2.4733 -0.2315 16 6 6.1731 -1.2388 -0.2486 17 8 5.6284 -0.1568 -0.1532 18 8 7.5133 -1.3102 -0.3699 19 6 8.2420 -0.0543 -0.3799 20 6 9.7393 -0.3347 -0.5235 21 6 10.4957 0.9686 -0.5332 22 7 11.8382 0.9677 -0.6516 23 8 9.8963 2.0184 -0.4354 24 1 -0.4850 0.8400 -0.0004 25 1 2.1497 -3.5258 0.0059 26 1 3.2666 -5.7047 -0.1878 27 1 5.7132 -5.8329 -0.4079 28 1 7.0640 -3.7818 -0.4332 29 1 7.9041 0.5552 -1.2180 30 1 8.0604 0.4786 0.5534 31 1 10.0768 -0.9441 0.3148 32 1 9.9212 -0.8678 -1.4567 33 1 12.3176 0.1282 -0.7303 34 1 12.3252 1.8066 -0.6575 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000759557953.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:01:29 Heat of formation + Delta-G solvation = -127.213492 kcal Electronic energy + Delta-G solvation = -21013.260587 eV Core-core repulsion = 17491.148187 eV Total energy + Delta-G solvation = -3522.112400 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.14267 -39.65825 -38.78248 -36.62474 -35.83956 -34.00336 -32.52289 -31.97113 -30.60675 -29.26317 -25.55031 -24.85980 -23.13994 -21.49841 -20.64259 -20.40075 -18.05347 -17.92277 -17.41790 -17.18424 -16.48335 -16.46208 -15.77329 -15.17235 -14.76982 -14.34755 -14.02564 -13.93615 -13.80656 -13.72534 -13.23419 -12.79191 -12.42480 -12.19284 -11.85241 -11.65044 -11.41722 -11.28422 -10.85127 -10.74902 -10.33162 -10.24506 -10.09197 -10.01285 -9.84784 -9.39499 -8.94031 -8.45847 -7.56007 -6.53150 -4.18520 1.44130 2.16247 2.33970 2.75066 3.26187 3.30502 3.36835 3.54538 3.63284 4.31146 4.42564 4.49162 4.66164 4.83431 4.84527 5.03234 5.26375 5.40372 5.44554 5.62615 5.68114 5.77395 5.97844 6.01446 6.35295 6.42983 6.52459 6.79621 6.83084 6.95532 7.05860 7.11159 7.43573 7.63499 7.88184 7.93684 8.49572 8.81412 9.42285 10.51427 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.015340 B = 0.005323 C = 0.003964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.871211 B = 5259.269539 C = 7061.214775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.074 3.926 3 Si 0.898 3.102 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.239 1.239 7 C -0.397 4.397 8 H 0.111 0.889 9 O -0.166 6.166 10 C 0.203 3.797 11 C -0.228 4.228 12 C -0.043 4.043 13 C -0.226 4.226 14 C -0.018 4.018 15 C -0.215 4.215 16 C 0.506 3.494 17 O -0.489 6.489 18 O -0.367 6.367 19 C 0.082 3.918 20 C -0.141 4.141 21 C 0.521 3.479 22 N -0.856 5.856 23 O -0.537 6.537 24 H 0.283 0.717 25 H 0.141 0.859 26 H 0.116 0.884 27 H 0.115 0.885 28 H 0.126 0.874 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.106 0.894 32 H 0.107 0.893 33 H 0.402 0.598 34 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.120 -6.021 -1.395 21.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.133 4.133 3 Si 0.723 3.277 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.162 1.162 7 C -0.472 4.472 8 H 0.128 0.872 9 O -0.065 6.065 10 C 0.145 3.855 11 C -0.247 4.247 12 C -0.062 4.062 13 C -0.245 4.245 14 C -0.036 4.036 15 C -0.218 4.218 16 C 0.352 3.648 17 O -0.376 6.376 18 O -0.286 6.286 19 C 0.007 3.993 20 C -0.181 4.181 21 C 0.306 3.694 22 N -0.421 5.421 23 O -0.413 6.413 24 H 0.093 0.907 25 H 0.158 0.842 26 H 0.134 0.866 27 H 0.133 0.867 28 H 0.144 0.856 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.125 0.875 32 H 0.125 0.875 33 H 0.231 0.769 34 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 19.244 -4.673 -1.259 19.844 hybrid contribution 0.595 0.625 -0.078 0.867 sum 19.839 -4.048 -1.337 20.292 Atomic orbital electron populations 1.69629 1.05808 1.29130 1.45426 1.24506 0.94985 0.99337 0.94440 0.86229 0.81303 0.80415 0.79782 1.19758 1.20985 1.16196 1.20949 0.76873 0.96905 1.52436 0.87190 1.83755 1.22432 1.25103 1.75246 1.18988 0.89881 0.85998 0.90631 1.21237 1.01374 0.91411 1.10691 1.21034 0.94466 0.96793 0.93898 1.20607 0.93943 0.97512 1.12454 1.20950 0.99130 0.90580 0.92973 1.18043 0.89811 0.91013 1.22949 1.21039 0.79762 0.89970 0.74066 1.90936 1.71681 1.29939 1.45086 1.86420 1.21361 1.35356 1.85421 1.22474 0.88579 0.84207 1.04055 1.21484 0.94664 0.95943 1.06002 1.20421 0.82699 0.91127 0.75165 1.43823 1.07613 1.12738 1.77877 1.90823 1.68219 1.33750 1.48504 0.90663 0.84173 0.86618 0.86729 0.85562 0.90597 0.90611 0.87535 0.87519 0.76920 0.76684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.95 13.96 55.48 0.77 -24.17 16 2 C 0.07 2.11 5.49 -17.51 -0.10 2.01 16 3 Si 0.90 23.27 28.62 -169.99 -4.86 18.40 16 4 H -0.27 -7.04 7.11 56.52 0.40 -6.64 16 5 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.24 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.40 -11.27 9.95 30.91 0.31 -10.96 16 8 H 0.11 3.08 5.44 -52.49 -0.29 2.80 16 9 O -0.17 -4.54 6.67 -20.99 -0.14 -4.68 16 10 C 0.20 4.78 6.66 -38.58 -0.26 4.52 16 11 C -0.23 -4.73 9.16 -39.44 -0.36 -5.10 16 12 C -0.04 -0.73 10.03 -39.53 -0.40 -1.12 16 13 C -0.23 -3.49 10.02 -39.61 -0.40 -3.88 16 14 C -0.02 -0.30 9.61 -39.18 -0.38 -0.68 16 15 C -0.22 -4.49 5.89 -104.82 -0.62 -5.10 16 16 C 0.51 10.76 7.89 34.46 0.27 11.04 16 17 O -0.49 -12.39 14.96 -26.59 -0.40 -12.79 16 18 O -0.37 -6.16 9.47 -40.65 -0.38 -6.55 16 19 C 0.08 1.22 4.77 37.16 0.18 1.40 16 20 C -0.14 -1.32 6.08 -27.88 -0.17 -1.49 16 21 C 0.52 5.45 8.10 -10.99 -0.09 5.37 16 22 N -0.86 -4.91 8.87 31.22 0.28 -4.63 16 23 O -0.54 -8.48 16.82 5.55 0.09 -8.39 16 24 H 0.28 7.56 8.31 -40.82 -0.34 7.22 16 25 H 0.14 2.99 5.64 -52.49 -0.30 2.70 16 26 H 0.12 1.57 8.06 -52.49 -0.42 1.14 16 27 H 0.11 1.39 8.06 -52.48 -0.42 0.97 16 28 H 0.13 1.72 7.61 -52.49 -0.40 1.32 16 29 H 0.08 1.24 8.10 -51.93 -0.42 0.82 16 30 H 0.08 1.24 8.09 -51.93 -0.42 0.82 16 31 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.40 0.94 8.83 -40.82 -0.36 0.58 16 34 H 0.40 2.02 8.93 -40.82 -0.36 1.65 16 LS Contribution 307.68 15.07 4.64 4.64 Total: -1.00 -35.44 307.68 -5.38 -40.82 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -3.37 Total: 1.35 kcal Atomic # 6 Polarization: -2.00 SS G_CDS: -2.00 Total: -4.00 kcal Atomic # 7 Polarization: -29.85 SS G_CDS: 1.05 Total: -28.80 kcal Atomic # 8 Polarization: -31.58 SS G_CDS: -0.83 Total: -32.41 kcal Atomic # 14 Polarization: 23.27 SS G_CDS: -4.86 Total: 18.40 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -35.44 -5.38 -40.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759557953.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.395 kcal (2) G-P(sol) polarization free energy of solvation -35.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds