Wall clock time and date at job start Fri Apr 10 2020 14:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31438 * 1 3 3 Si 1.86793 * 120.00165 * 2 1 4 4 H 1.48502 * 109.46842 * 269.99607 * 3 2 1 5 5 H 1.48498 * 109.47197 * 29.99113 * 3 2 1 6 6 H 1.48502 * 109.47285 * 149.99786 * 3 2 1 7 7 C 1.38757 * 119.99981 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99724 * 0.02562 * 7 2 1 9 9 O 1.34915 * 120.00368 * 179.97438 * 7 2 1 10 10 C 1.34310 * 117.00241 * 180.02562 * 9 7 2 11 11 O 1.21212 * 120.00080 * 0.02562 * 10 9 7 12 12 C 1.50706 * 119.99701 * 180.02562 * 10 9 7 13 13 H 1.09000 * 109.47161 * 60.00139 * 12 10 9 14 14 C 1.52997 * 109.47103 * 300.00105 * 12 10 9 15 15 O 1.42904 * 109.47002 * 305.00121 * 14 12 10 16 16 N 1.46500 * 109.46949 * 180.02562 * 12 10 9 17 17 C 1.34775 * 120.00366 * 205.00138 * 16 12 10 18 18 O 1.21551 * 119.99652 * 359.97438 * 17 16 12 19 19 C 1.47842 * 120.00198 * 179.97438 * 17 16 12 20 20 C 1.39574 * 120.14766 * 359.72268 * 19 17 16 21 21 C 1.37958 * 119.85605 * 179.78882 * 20 19 17 22 22 C 1.38361 * 120.14245 * 0.48798 * 21 20 19 23 23 C 1.38353 * 120.29122 * 359.74255 * 22 21 20 24 24 C 1.37956 * 120.14986 * 0.02562 * 23 22 21 25 25 H 0.96996 * 119.99942 * 0.02562 * 1 2 3 26 26 H 1.08993 * 109.47132 * 64.99894 * 14 12 10 27 27 H 1.09001 * 109.46992 * 185.00649 * 14 12 10 28 28 H 0.96702 * 114.00233 * 180.02562 * 15 14 12 29 29 H 0.97001 * 119.99882 * 24.99945 * 16 12 10 30 30 H 1.08004 * 120.06889 * 359.97438 * 20 19 17 31 31 H 1.08002 * 119.92656 * 180.22669 * 21 20 19 32 32 H 1.08002 * 119.85311 * 179.72141 * 22 21 20 33 33 H 1.08007 * 119.92679 * 180.02562 * 23 22 21 34 34 H 1.08001 * 120.07709 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6177 0.0000 4 1 2.4960 2.0462 -1.4001 5 1 1.4458 2.6527 0.6998 6 1 3.5459 1.4401 0.7001 7 6 2.0082 -1.2017 0.0005 8 1 1.4681 -2.1370 0.0005 9 8 3.3573 -1.2018 0.0000 10 6 3.9670 -2.3985 0.0000 11 8 3.3069 -3.4151 0.0001 12 6 5.4720 -2.4773 0.0001 13 1 5.8617 -1.9832 0.8901 14 6 6.0191 -1.7838 -1.2491 15 8 5.4185 -2.3556 -2.4130 16 7 5.8874 -3.8822 -0.0005 17 6 7.0928 -4.2288 0.4927 18 8 7.8356 -3.3756 0.9375 19 6 7.5117 -5.6466 0.4926 20 6 6.6590 -6.6295 -0.0122 21 6 7.0577 -7.9502 -0.0134 22 6 8.2959 -8.3025 0.4937 23 6 9.1441 -7.3338 0.9999 24 6 8.7595 -6.0089 1.0026 25 1 -0.4850 0.8400 -0.0004 26 1 5.7860 -0.7199 -1.2055 27 1 7.0999 -1.9175 -1.2951 28 1 5.7197 -1.9635 -3.2440 29 1 5.2948 -4.5630 -0.3558 30 1 5.6902 -6.3563 -0.4038 31 1 6.4002 -8.7112 -0.4070 32 1 8.6015 -9.3384 0.4946 33 1 10.1095 -7.6153 1.3939 34 1 9.4224 -5.2537 1.3984 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000917502299.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:00:45 Heat of formation + Delta-G solvation = -130.306311 kcal Electronic energy + Delta-G solvation = -21228.301960 eV Core-core repulsion = 17706.055445 eV Total energy + Delta-G solvation = -3522.246515 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.43222 -39.35976 -38.27851 -36.72351 -35.57039 -34.14921 -32.36219 -31.69099 -31.11236 -29.31921 -25.66163 -24.42780 -23.16496 -22.58050 -20.53754 -19.92349 -18.44482 -18.05879 -17.39379 -16.57077 -16.18367 -15.99964 -15.37385 -15.23363 -14.70106 -14.65488 -14.52466 -14.07855 -13.77208 -13.58274 -13.43184 -12.87217 -12.55089 -12.44529 -12.14399 -11.85158 -11.58647 -11.27685 -11.22656 -10.53576 -10.42793 -10.11296 -9.88215 -9.73293 -9.37522 -9.20575 -9.17776 -8.94283 -8.71544 -6.40189 -4.16097 0.69519 1.17080 2.78752 2.96830 3.08338 3.23562 3.30330 3.36386 3.73497 4.02876 4.21701 4.38445 4.57803 4.65677 4.73900 4.93647 5.03884 5.17871 5.26803 5.29030 5.48990 5.55262 5.62176 5.69451 5.77807 6.11064 6.13513 6.20703 6.22853 6.47679 6.67667 7.56188 7.65895 7.76337 7.99680 8.19206 8.52749 8.96851 9.59356 10.68070 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.032400 B = 0.004043 C = 0.003862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.981542 B = 6923.603893 C = 7249.109355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.067 3.933 3 Si 0.904 3.096 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.259 1.259 7 C -0.380 4.380 8 H 0.110 0.890 9 O -0.243 6.243 10 C 0.417 3.583 11 O -0.534 6.534 12 C 0.164 3.836 13 H 0.129 0.871 14 C 0.072 3.928 15 O -0.562 6.562 16 N -0.696 5.696 17 C 0.561 3.439 18 O -0.544 6.544 19 C -0.130 4.130 20 C -0.082 4.082 21 C -0.128 4.128 22 C -0.097 4.097 23 C -0.132 4.132 24 C -0.061 4.061 25 H 0.280 0.720 26 H 0.069 0.931 27 H 0.059 0.941 28 H 0.379 0.621 29 H 0.413 0.587 30 H 0.131 0.869 31 H 0.129 0.871 32 H 0.126 0.874 33 H 0.128 0.872 34 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.483 -10.716 -1.725 20.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.137 4.137 3 Si 0.729 3.271 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.183 1.183 7 C -0.455 4.455 8 H 0.128 0.872 9 O -0.151 6.151 10 C 0.262 3.738 11 O -0.428 6.428 12 C 0.057 3.943 13 H 0.146 0.854 14 C -0.007 4.007 15 O -0.367 6.367 16 N -0.349 5.349 17 C 0.349 3.651 18 O -0.423 6.423 19 C -0.133 4.133 20 C -0.101 4.101 21 C -0.146 4.146 22 C -0.115 4.115 23 C -0.150 4.150 24 C -0.080 4.080 25 H 0.090 0.910 26 H 0.087 0.913 27 H 0.077 0.923 28 H 0.225 0.775 29 H 0.251 0.749 30 H 0.149 0.851 31 H 0.147 0.853 32 H 0.143 0.857 33 H 0.146 0.854 34 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 17.283 -10.566 -0.955 20.279 hybrid contribution 0.077 0.751 -0.592 0.959 sum 17.359 -9.815 -1.547 20.002 Atomic orbital electron populations 1.69599 1.05696 1.28469 1.47394 1.24528 0.95001 0.98648 0.95497 0.86239 0.80384 0.81521 0.78949 1.19802 1.20669 1.18319 1.20635 0.75815 0.97049 1.52008 0.87223 1.83463 1.24203 1.30610 1.76826 1.22384 0.89456 0.83177 0.78821 1.90576 1.66255 1.36251 1.49739 1.20305 0.90841 0.83317 0.99843 0.85377 1.22489 0.96309 0.97004 0.84941 1.86560 1.69861 1.64302 1.15989 1.45593 1.18169 1.08867 1.62314 1.18255 0.81206 0.88397 0.77277 1.90754 1.52999 1.51363 1.47199 1.19915 0.96514 0.92679 1.04184 1.21478 0.99027 0.92945 0.96606 1.21143 0.96835 0.96061 1.00521 1.21379 0.93964 0.99635 0.96552 1.21146 1.00237 0.92677 1.00918 1.21289 0.94652 0.96578 0.95432 0.90960 0.91252 0.92325 0.77472 0.74858 0.85114 0.85274 0.85650 0.85384 0.84607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.72 13.96 55.48 0.77 -24.94 16 2 C 0.07 1.92 5.49 -17.53 -0.10 1.82 16 3 Si 0.90 21.17 28.62 -169.99 -4.86 16.31 16 4 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 6 H -0.26 -5.92 7.11 56.52 0.40 -5.51 16 7 C -0.38 -11.24 10.10 30.92 0.31 -10.93 16 8 H 0.11 3.58 7.09 -52.49 -0.37 3.21 16 9 O -0.24 -6.38 8.50 -20.69 -0.18 -6.56 16 10 C 0.42 9.84 6.79 36.01 0.24 10.08 16 11 O -0.53 -13.88 15.07 -19.05 -0.29 -14.17 16 12 C 0.16 3.00 2.89 -69.08 -0.20 2.80 16 13 H 0.13 2.24 7.58 -51.93 -0.39 1.85 16 14 C 0.07 1.12 6.78 37.16 0.25 1.38 16 15 O -0.56 -8.97 13.09 -35.23 -0.46 -9.43 16 16 N -0.70 -11.52 4.85 -55.88 -0.27 -11.80 16 17 C 0.56 8.85 7.74 -12.33 -0.10 8.75 16 18 O -0.54 -9.70 16.01 5.32 0.09 -9.61 16 19 C -0.13 -1.70 5.87 -104.97 -0.62 -2.32 16 20 C -0.08 -0.94 9.54 -39.19 -0.37 -1.31 16 21 C -0.13 -1.19 10.03 -39.64 -0.40 -1.59 16 22 C -0.10 -0.81 10.04 -39.49 -0.40 -1.21 16 23 C -0.13 -1.18 10.03 -39.64 -0.40 -1.58 16 24 C -0.06 -0.69 9.60 -39.18 -0.38 -1.07 16 25 H 0.28 7.53 8.31 -40.82 -0.34 7.19 16 26 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 27 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 28 H 0.38 4.04 9.12 45.56 0.42 4.46 16 29 H 0.41 6.74 5.83 -40.82 -0.24 6.50 16 30 H 0.13 1.44 6.41 -52.48 -0.34 1.11 16 31 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 32 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 33 H 0.13 0.82 8.06 -52.48 -0.42 0.39 16 34 H 0.14 1.51 7.65 -52.49 -0.40 1.11 16 LS Contribution 308.75 15.07 4.65 4.65 Total: -1.00 -35.10 308.75 -5.26 -40.36 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -2.57 Total: 10.36 kcal Atomic # 6 Polarization: 6.97 SS G_CDS: -2.14 Total: 4.83 kcal Atomic # 7 Polarization: -37.24 SS G_CDS: 0.50 Total: -36.74 kcal Atomic # 8 Polarization: -38.93 SS G_CDS: -0.84 Total: -39.77 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.86 Total: 16.31 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -35.10 -5.26 -40.36 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000917502299.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.949 kcal (2) G-P(sol) polarization free energy of solvation -35.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds