Wall clock time and date at job start Fri Apr 10 2020 14:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31438 * 1 3 3 Si 1.86793 * 120.00165 * 2 1 4 4 H 1.48502 * 109.46842 * 269.99607 * 3 2 1 5 5 H 1.48498 * 109.47197 * 29.99113 * 3 2 1 6 6 H 1.48502 * 109.47285 * 149.99786 * 3 2 1 7 7 C 1.38757 * 119.99981 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99724 * 0.02562 * 7 2 1 9 9 O 1.34915 * 120.00368 * 179.97438 * 7 2 1 10 10 C 1.34310 * 117.00241 * 180.02562 * 9 7 2 11 11 O 1.21212 * 120.00080 * 0.02562 * 10 9 7 12 12 C 1.50706 * 119.99701 * 180.02562 * 10 9 7 13 13 H 1.09000 * 109.47161 * 60.00139 * 12 10 9 14 14 C 1.52997 * 109.47103 * 300.00105 * 12 10 9 15 15 O 1.42904 * 109.47002 * 305.00121 * 14 12 10 16 16 N 1.46500 * 109.46949 * 180.02562 * 12 10 9 17 17 C 1.34775 * 120.00366 * 205.00138 * 16 12 10 18 18 O 1.21551 * 119.99652 * 359.97438 * 17 16 12 19 19 C 1.47842 * 120.00198 * 179.97438 * 17 16 12 20 20 C 1.39574 * 120.14766 * 359.72268 * 19 17 16 21 21 C 1.37958 * 119.85605 * 179.78882 * 20 19 17 22 22 C 1.38361 * 120.14245 * 0.48798 * 21 20 19 23 23 C 1.38353 * 120.29122 * 359.74255 * 22 21 20 24 24 C 1.37956 * 120.14986 * 0.02562 * 23 22 21 25 25 H 0.96996 * 119.99942 * 0.02562 * 1 2 3 26 26 H 1.08993 * 109.47132 * 64.99894 * 14 12 10 27 27 H 1.09001 * 109.46992 * 185.00649 * 14 12 10 28 28 H 0.96702 * 114.00233 * 180.02562 * 15 14 12 29 29 H 0.97001 * 119.99882 * 24.99945 * 16 12 10 30 30 H 1.08004 * 120.06889 * 359.97438 * 20 19 17 31 31 H 1.08002 * 119.92656 * 180.22669 * 21 20 19 32 32 H 1.08002 * 119.85311 * 179.72141 * 22 21 20 33 33 H 1.08007 * 119.92679 * 180.02562 * 23 22 21 34 34 H 1.08001 * 120.07709 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6177 0.0000 4 1 2.4960 2.0462 -1.4001 5 1 1.4458 2.6527 0.6998 6 1 3.5459 1.4401 0.7001 7 6 2.0082 -1.2017 0.0005 8 1 1.4681 -2.1370 0.0005 9 8 3.3573 -1.2018 0.0000 10 6 3.9670 -2.3985 0.0000 11 8 3.3069 -3.4151 0.0001 12 6 5.4720 -2.4773 0.0001 13 1 5.8617 -1.9832 0.8901 14 6 6.0191 -1.7838 -1.2491 15 8 5.4185 -2.3556 -2.4130 16 7 5.8874 -3.8822 -0.0005 17 6 7.0928 -4.2288 0.4927 18 8 7.8356 -3.3756 0.9375 19 6 7.5117 -5.6466 0.4926 20 6 6.6590 -6.6295 -0.0122 21 6 7.0577 -7.9502 -0.0134 22 6 8.2959 -8.3025 0.4937 23 6 9.1441 -7.3338 0.9999 24 6 8.7595 -6.0089 1.0026 25 1 -0.4850 0.8400 -0.0004 26 1 5.7860 -0.7199 -1.2055 27 1 7.0999 -1.9175 -1.2951 28 1 5.7197 -1.9635 -3.2440 29 1 5.2948 -4.5630 -0.3558 30 1 5.6902 -6.3563 -0.4038 31 1 6.4002 -8.7112 -0.4070 32 1 8.6015 -9.3384 0.4946 33 1 10.1095 -7.6153 1.3939 34 1 9.4224 -5.2537 1.3984 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000917502299.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:00:45 Heat of formation + Delta-G solvation = -157.386827 kcal Electronic energy + Delta-G solvation = -21229.476259 eV Core-core repulsion = 17706.055445 eV Total energy + Delta-G solvation = -3523.420814 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.83042 -40.94537 -39.35334 -38.08332 -37.45036 -35.57971 -34.54397 -32.69482 -31.89456 -30.59972 -27.71103 -25.60714 -24.46876 -23.43908 -21.91629 -21.39105 -20.25254 -19.69121 -18.63297 -18.18550 -17.54944 -17.19397 -16.93035 -16.55948 -16.24170 -16.06442 -15.50806 -15.48409 -15.10581 -14.72903 -14.54173 -14.40421 -14.21655 -13.93782 -13.52441 -13.22867 -12.93581 -12.62429 -12.42462 -12.30982 -12.03260 -11.89511 -11.43457 -11.25315 -10.95552 -10.85717 -10.44961 -9.96671 -9.93622 -8.57224 -6.44749 -0.18457 0.40468 1.20195 1.32086 1.45099 1.53229 1.63381 1.76901 2.25939 2.36126 2.86983 2.89143 3.16896 3.53635 3.85819 3.89681 4.00906 4.03450 4.21895 4.27306 4.41815 4.46104 4.49078 4.53811 4.83415 5.04618 5.07282 5.34148 5.42247 5.43640 5.49532 5.84516 5.94115 6.29003 6.41783 6.77152 6.81017 6.93417 7.46691 8.55415 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.032400 B = 0.004043 C = 0.003862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.981542 B = 6923.603893 C = 7249.109355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.019 3.981 3 Si 0.981 3.019 4 H -0.256 1.256 5 H -0.266 1.266 6 H -0.248 1.248 7 C -0.408 4.408 8 H 0.058 0.942 9 O -0.246 6.246 10 C 0.419 3.581 11 O -0.563 6.563 12 C 0.167 3.833 13 H 0.139 0.861 14 C 0.078 3.922 15 O -0.585 6.585 16 N -0.698 5.698 17 C 0.562 3.438 18 O -0.569 6.569 19 C -0.156 4.156 20 C -0.094 4.094 21 C -0.130 4.130 22 C -0.086 4.086 23 C -0.127 4.127 24 C -0.072 4.072 25 H 0.290 0.710 26 H 0.079 0.921 27 H 0.081 0.919 28 H 0.401 0.599 29 H 0.412 0.588 30 H 0.125 0.875 31 H 0.152 0.848 32 H 0.161 0.839 33 H 0.159 0.841 34 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.147 -10.941 -1.977 23.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.182 4.182 3 Si 0.800 3.200 4 H -0.180 1.180 5 H -0.190 1.190 6 H -0.172 1.172 7 C -0.484 4.484 8 H 0.076 0.924 9 O -0.154 6.154 10 C 0.265 3.735 11 O -0.459 6.459 12 C 0.061 3.939 13 H 0.156 0.844 14 C -0.001 4.001 15 O -0.394 6.394 16 N -0.352 5.352 17 C 0.352 3.648 18 O -0.449 6.449 19 C -0.159 4.159 20 C -0.113 4.113 21 C -0.148 4.148 22 C -0.104 4.104 23 C -0.145 4.145 24 C -0.091 4.091 25 H 0.100 0.900 26 H 0.097 0.903 27 H 0.099 0.901 28 H 0.252 0.748 29 H 0.251 0.749 30 H 0.143 0.857 31 H 0.170 0.830 32 H 0.179 0.821 33 H 0.176 0.824 34 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 19.950 -10.818 -1.227 22.728 hybrid contribution -0.741 0.583 -0.517 1.075 sum 19.210 -10.235 -1.744 21.836 Atomic orbital electron populations 1.69694 1.07596 1.30344 1.47722 1.25556 0.95957 1.02690 0.93963 0.85116 0.79147 0.75702 0.80042 1.18047 1.19021 1.17188 1.20307 0.77335 0.95907 1.54801 0.92375 1.83465 1.22291 1.31746 1.77873 1.23596 0.91644 0.82066 0.76177 1.90557 1.67717 1.37142 1.50436 1.20435 0.86392 0.85023 1.02096 0.84391 1.22466 0.97170 0.96878 0.83584 1.86508 1.70495 1.65077 1.17289 1.45633 1.18661 1.08073 1.62809 1.18705 0.80350 0.89553 0.76164 1.90723 1.53516 1.52365 1.48339 1.19819 0.97969 0.91180 1.06905 1.21545 0.98771 0.93895 0.97094 1.21477 0.97787 0.95443 1.00048 1.21836 0.92946 1.01274 0.94325 1.21510 1.01508 0.91509 0.99974 1.21416 0.94004 0.97942 0.95710 0.89960 0.90258 0.90050 0.74812 0.74921 0.85744 0.82994 0.82094 0.82372 0.84997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.11 13.96 21.63 0.30 -54.81 16 2 C 0.02 1.08 5.49 84.88 0.47 1.55 16 3 Si 0.98 43.02 28.62 68.60 1.96 44.98 16 4 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 5 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 6 H -0.25 -10.40 7.11 99.48 0.71 -9.69 16 7 C -0.41 -25.14 10.10 67.94 0.69 -24.45 16 8 H 0.06 4.08 7.09 -2.91 -0.02 4.06 16 9 O -0.25 -13.11 8.50 14.93 0.13 -12.98 16 10 C 0.42 20.30 6.79 71.24 0.48 20.78 16 11 O -0.56 -30.69 15.07 20.77 0.31 -30.38 16 12 C 0.17 6.12 2.89 44.25 0.13 6.24 16 13 H 0.14 4.78 7.58 -2.39 -0.02 4.76 16 14 C 0.08 2.33 6.78 71.98 0.49 2.82 16 15 O -0.58 -18.11 13.09 -148.98 -1.95 -20.06 16 16 N -0.70 -23.42 4.85 -448.98 -2.18 -25.59 16 17 C 0.56 17.81 7.74 86.79 0.67 18.48 16 18 O -0.57 -20.18 16.01 -3.88 -0.06 -20.24 16 19 C -0.16 -4.03 5.87 -20.09 -0.12 -4.14 16 20 C -0.09 -2.10 9.54 22.53 0.21 -1.89 16 21 C -0.13 -2.11 10.03 22.23 0.22 -1.89 16 22 C -0.09 -1.12 10.04 22.33 0.22 -0.90 16 23 C -0.13 -1.89 10.03 22.23 0.22 -1.67 16 24 C -0.07 -1.55 9.60 22.53 0.22 -1.33 16 25 H 0.29 15.74 8.31 -92.71 -0.77 14.97 16 26 H 0.08 2.22 8.14 -2.39 -0.02 2.21 16 27 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 28 H 0.40 7.92 9.12 -74.06 -0.68 7.24 16 29 H 0.41 13.92 5.83 -92.71 -0.54 13.38 16 30 H 0.12 2.83 6.41 -2.91 -0.02 2.81 16 31 H 0.15 1.73 8.06 -2.91 -0.02 1.70 16 32 H 0.16 0.99 8.06 -2.91 -0.02 0.96 16 33 H 0.16 1.37 8.06 -2.91 -0.02 1.35 16 34 H 0.13 2.86 7.65 -2.91 -0.02 2.84 16 Total: -1.00 -79.22 308.75 2.37 -76.85 By element: Atomic # 1 Polarization: 28.69 SS G_CDS: -0.05 Total: 28.64 kcal Atomic # 6 Polarization: 9.69 SS G_CDS: 3.91 Total: 13.60 kcal Atomic # 7 Polarization: -78.53 SS G_CDS: -1.87 Total: -80.40 kcal Atomic # 8 Polarization: -82.09 SS G_CDS: -1.57 Total: -83.66 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 1.96 Total: 44.98 kcal Total: -79.22 2.37 -76.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000917502299.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.540 kcal (2) G-P(sol) polarization free energy of solvation -79.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds