Wall clock time and date at job start Fri Apr 10 2020 14:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 120.00398 * 2 1 4 4 H 1.48496 * 109.47331 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47191 * 300.00318 * 3 2 1 6 6 H 1.48504 * 109.47058 * 59.99868 * 3 2 1 7 7 C 1.37882 * 119.99699 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99759 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00151 * 359.97438 * 7 2 1 10 10 C 1.50698 * 109.46944 * 179.97438 * 9 7 2 11 11 O 1.21283 * 120.00472 * 0.02562 * 10 9 7 12 12 N 1.34777 * 119.99538 * 179.97438 * 10 9 7 13 13 C 1.46499 * 119.99665 * 179.72653 * 12 10 9 14 14 C 1.50703 * 109.47138 * 180.28062 * 13 12 10 15 15 O 1.21293 * 120.00086 * 359.97438 * 14 13 12 16 16 C 1.46864 * 119.99847 * 180.02562 * 14 13 12 17 17 C 1.40005 * 120.10085 * 359.97438 * 16 14 13 18 18 C 1.37673 * 119.97756 * 179.97438 * 17 16 14 19 19 C 1.38920 * 120.17866 * 359.97438 * 18 17 16 20 20 O 1.35742 * 119.90199 * 180.02562 * 19 18 17 21 21 C 1.39484 * 120.19399 * 359.97438 * 19 18 17 22 22 O 1.35997 * 119.98986 * 180.02562 * 21 19 18 23 23 C 1.38031 * 120.02330 * 359.78732 * 21 19 18 24 24 H 0.97004 * 119.99534 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.46601 * 60.00062 * 9 7 2 26 26 H 1.08993 * 109.46922 * 300.00362 * 9 7 2 27 27 H 0.97001 * 120.00485 * 0.02562 * 12 10 9 28 28 H 1.09009 * 109.47454 * 300.27637 * 13 12 10 29 29 H 1.08998 * 109.47492 * 60.27932 * 13 12 10 30 30 H 1.08005 * 120.01188 * 0.02562 * 17 16 14 31 31 H 1.08001 * 119.91009 * 180.02562 * 18 17 16 32 32 H 0.96698 * 114.00130 * 90.00302 * 20 19 18 33 33 H 0.96700 * 114.00092 * 89.99874 * 22 21 19 34 34 H 1.07992 * 120.09439 * 180.25272 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0017 10 6 2.2302 -3.6446 0.0015 11 8 3.4226 -3.4231 0.0009 12 7 1.7809 -4.9153 0.0029 13 6 2.7328 -6.0288 -0.0034 14 6 1.9793 -7.3339 -0.0072 15 8 0.7663 -7.3339 -0.0045 16 6 2.7136 -8.6058 -0.0132 17 6 4.1136 -8.6082 -0.0159 18 6 4.7994 -9.8020 -0.0209 19 6 4.1060 -11.0057 -0.0228 20 8 4.7878 -12.1795 -0.0273 21 6 2.7112 -11.0118 -0.0191 22 8 2.0365 -12.1926 -0.0205 23 6 2.0153 -9.8198 -0.0091 24 1 -0.4850 0.8401 0.0004 25 1 0.6239 -2.5574 -0.8881 26 1 0.6246 -2.5563 0.8919 27 1 0.8272 -5.0925 0.0037 28 1 3.3578 -5.9676 -0.8944 29 1 3.3612 -5.9747 0.8856 30 1 4.6555 -7.6739 -0.0131 31 1 5.8794 -9.8026 -0.0225 32 1 4.9870 -12.5220 0.8548 33 1 1.8438 -12.5365 0.8625 34 1 0.9354 -9.8231 -0.0021 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143203189.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:00:09 Heat of formation + Delta-G solvation = -134.315602 kcal Electronic energy + Delta-G solvation = -20190.939645 eV Core-core repulsion = 16668.519274 eV Total energy + Delta-G solvation = -3522.420371 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.87778 -39.69915 -38.34312 -37.45080 -36.73188 -33.92286 -32.92116 -31.04110 -30.65805 -29.20731 -27.23894 -24.14734 -23.28340 -22.92301 -20.50964 -19.84227 -19.23646 -18.03824 -17.08003 -16.87081 -16.33051 -16.00971 -15.72925 -15.57989 -15.26833 -14.75395 -14.52795 -14.24468 -14.08741 -13.77469 -13.52622 -12.71827 -12.62018 -12.46566 -12.24262 -12.08828 -12.02205 -11.16943 -10.76092 -10.74877 -10.63287 -10.09630 -9.92530 -9.42953 -9.25198 -9.09648 -8.75249 -8.61650 -8.42140 -6.04999 -4.04822 0.08528 0.73209 1.92801 3.11712 3.32265 3.33972 3.41061 3.49323 3.56984 3.65406 3.69759 4.03644 4.34258 4.49629 4.62232 4.76911 4.88711 5.17113 5.32916 5.35384 5.40861 5.42472 5.63180 5.74182 5.78047 6.09434 6.28585 6.87265 6.89508 7.17847 7.21981 7.27129 7.33629 7.95713 8.03176 8.40357 9.06084 9.15711 9.60101 11.07451 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.048761 B = 0.002768 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.091801 B =10114.862843 C =10663.441025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.054 3.946 3 Si 0.901 3.099 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.508 4.508 8 H 0.076 0.924 9 C 0.005 3.995 10 C 0.518 3.482 11 O -0.546 6.546 12 N -0.744 5.744 13 C 0.075 3.925 14 C 0.393 3.607 15 O -0.442 6.442 16 C -0.158 4.158 17 C -0.060 4.060 18 C -0.142 4.142 19 C 0.112 3.888 20 O -0.487 6.487 21 C 0.066 3.934 22 O -0.485 6.485 23 C -0.070 4.070 24 H 0.261 0.739 25 H 0.049 0.951 26 H 0.049 0.951 27 H 0.406 0.594 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.146 0.854 31 H 0.143 0.857 32 H 0.392 0.608 33 H 0.388 0.612 34 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.689 -24.830 3.297 25.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.147 4.147 3 Si 0.729 3.271 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.546 4.546 8 H 0.094 0.906 9 C -0.034 4.034 10 C 0.308 3.692 11 O -0.422 6.422 12 N -0.402 5.402 13 C -0.050 4.050 14 C 0.270 3.730 15 O -0.316 6.316 16 C -0.159 4.159 17 C -0.078 4.078 18 C -0.161 4.161 19 C 0.067 3.933 20 O -0.298 6.298 21 C 0.021 3.979 22 O -0.294 6.294 23 C -0.089 4.089 24 H 0.071 0.929 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.242 0.758 28 H 0.117 0.883 29 H 0.117 0.883 30 H 0.164 0.836 31 H 0.160 0.840 32 H 0.249 0.751 33 H 0.244 0.756 34 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 6.767 -24.420 2.082 25.425 hybrid contribution -0.005 0.459 0.980 1.083 sum 6.762 -23.961 3.063 25.084 Atomic orbital electron populations 1.69975 1.06060 1.26826 1.51117 1.25024 0.94916 0.99528 0.95238 0.86369 0.80286 0.82969 0.77462 1.19474 1.21012 1.21024 1.21201 0.94276 0.89046 1.50122 0.90584 1.19251 0.94142 0.90296 0.99719 1.22076 0.91176 0.83031 0.72871 1.90532 1.17947 1.84623 1.49128 1.46218 1.10063 1.05096 1.78833 1.21425 0.93864 0.85239 1.04448 1.22547 0.89130 0.90002 0.71351 1.90545 1.15878 1.89506 1.35709 1.20337 0.94332 0.94266 1.06981 1.21492 0.92734 0.98955 0.94666 1.21365 1.01225 0.90978 1.02515 1.19139 0.89175 0.86135 0.98878 1.84832 1.75661 1.35845 1.33420 1.18636 0.89225 0.85965 1.04081 1.84960 1.76201 1.35001 1.33273 1.21639 1.01545 0.90223 0.95454 0.92932 0.93262 0.93263 0.75794 0.88294 0.88291 0.83598 0.83961 0.75086 0.75622 0.83607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.60 13.29 55.43 0.74 -25.86 16 2 C 0.05 1.54 5.46 -17.82 -0.10 1.45 16 3 Si 0.90 22.11 29.54 -169.99 -5.02 17.09 16 4 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 7 C -0.51 -14.75 8.92 -34.44 -0.31 -15.06 16 8 H 0.08 2.29 6.75 -52.49 -0.35 1.93 16 9 C 0.01 0.13 5.46 -29.04 -0.16 -0.03 16 10 C 0.52 11.70 7.82 -10.99 -0.09 11.61 16 11 O -0.55 -13.75 15.46 5.55 0.09 -13.67 16 12 N -0.74 -13.09 5.53 -61.47 -0.34 -13.43 16 13 C 0.08 1.02 4.75 -5.19 -0.02 0.99 16 14 C 0.39 4.82 7.18 -30.82 -0.22 4.60 16 15 O -0.44 -6.55 15.65 5.55 0.09 -6.46 16 16 C -0.16 -1.58 5.87 -105.07 -0.62 -2.19 16 17 C -0.06 -0.48 9.46 -39.13 -0.37 -0.85 16 18 C -0.14 -1.04 9.96 -39.54 -0.39 -1.43 16 19 C 0.11 0.91 6.73 -38.87 -0.26 0.65 16 20 O -0.49 -3.41 13.26 -33.61 -0.45 -3.86 16 21 C 0.07 0.59 6.71 -39.19 -0.26 0.33 16 22 O -0.48 -3.90 13.28 -34.40 -0.46 -4.36 16 23 C -0.07 -0.68 9.52 -38.98 -0.37 -1.06 16 24 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 25 H 0.05 1.28 8.14 -51.93 -0.42 0.86 16 26 H 0.05 1.28 8.14 -51.93 -0.42 0.86 16 27 H 0.41 6.77 7.44 -40.82 -0.30 6.47 16 28 H 0.10 1.26 8.08 -51.92 -0.42 0.84 16 29 H 0.10 1.23 8.08 -51.93 -0.42 0.81 16 30 H 0.15 0.94 7.03 -52.48 -0.37 0.57 16 31 H 0.14 0.76 8.06 -52.49 -0.42 0.33 16 32 H 0.39 0.66 9.06 45.56 0.41 1.07 16 33 H 0.39 1.08 9.06 45.56 0.41 1.49 16 34 H 0.15 1.45 7.64 -52.49 -0.40 1.04 16 LS Contribution 310.96 15.07 4.69 4.69 Total: -1.00 -37.04 310.96 -5.68 -42.73 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -1.84 Total: 4.13 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: -3.17 Total: -0.99 kcal Atomic # 7 Polarization: -39.69 SS G_CDS: 0.40 Total: -39.29 kcal Atomic # 8 Polarization: -27.61 SS G_CDS: -0.73 Total: -28.34 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -37.04 -5.68 -42.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143203189.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.589 kcal (2) G-P(sol) polarization free energy of solvation -37.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds