Wall clock time and date at job start Fri Apr 10 2020 14:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 120.00398 * 2 1 4 4 H 1.48496 * 109.47331 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47191 * 300.00318 * 3 2 1 6 6 H 1.48504 * 109.47058 * 59.99868 * 3 2 1 7 7 C 1.37882 * 119.99699 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99759 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00151 * 359.97438 * 7 2 1 10 10 C 1.50698 * 109.46944 * 179.97438 * 9 7 2 11 11 O 1.21283 * 120.00472 * 0.02562 * 10 9 7 12 12 N 1.34777 * 119.99538 * 179.97438 * 10 9 7 13 13 C 1.46499 * 119.99665 * 179.72653 * 12 10 9 14 14 C 1.50703 * 109.47138 * 180.28062 * 13 12 10 15 15 O 1.21293 * 120.00086 * 359.97438 * 14 13 12 16 16 C 1.46864 * 119.99847 * 180.02562 * 14 13 12 17 17 C 1.40005 * 120.10085 * 359.97438 * 16 14 13 18 18 C 1.37673 * 119.97756 * 179.97438 * 17 16 14 19 19 C 1.38920 * 120.17866 * 359.97438 * 18 17 16 20 20 O 1.35742 * 119.90199 * 180.02562 * 19 18 17 21 21 C 1.39484 * 120.19399 * 359.97438 * 19 18 17 22 22 O 1.35997 * 119.98986 * 180.02562 * 21 19 18 23 23 C 1.38031 * 120.02330 * 359.78732 * 21 19 18 24 24 H 0.97004 * 119.99534 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.46601 * 60.00062 * 9 7 2 26 26 H 1.08993 * 109.46922 * 300.00362 * 9 7 2 27 27 H 0.97001 * 120.00485 * 0.02562 * 12 10 9 28 28 H 1.09009 * 109.47454 * 300.27637 * 13 12 10 29 29 H 1.08998 * 109.47492 * 60.27932 * 13 12 10 30 30 H 1.08005 * 120.01188 * 0.02562 * 17 16 14 31 31 H 1.08001 * 119.91009 * 180.02562 * 18 17 16 32 32 H 0.96698 * 114.00130 * 90.00302 * 20 19 18 33 33 H 0.96700 * 114.00092 * 89.99874 * 22 21 19 34 34 H 1.07992 * 120.09439 * 180.25272 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0017 10 6 2.2302 -3.6446 0.0015 11 8 3.4226 -3.4231 0.0009 12 7 1.7809 -4.9153 0.0029 13 6 2.7328 -6.0288 -0.0034 14 6 1.9793 -7.3339 -0.0072 15 8 0.7663 -7.3339 -0.0045 16 6 2.7136 -8.6058 -0.0132 17 6 4.1136 -8.6082 -0.0159 18 6 4.7994 -9.8020 -0.0209 19 6 4.1060 -11.0057 -0.0228 20 8 4.7878 -12.1795 -0.0273 21 6 2.7112 -11.0118 -0.0191 22 8 2.0365 -12.1926 -0.0205 23 6 2.0153 -9.8198 -0.0091 24 1 -0.4850 0.8401 0.0004 25 1 0.6239 -2.5574 -0.8881 26 1 0.6246 -2.5563 0.8919 27 1 0.8272 -5.0925 0.0037 28 1 3.3578 -5.9676 -0.8944 29 1 3.3612 -5.9747 0.8856 30 1 4.6555 -7.6739 -0.0131 31 1 5.8794 -9.8026 -0.0225 32 1 4.9870 -12.5220 0.8548 33 1 1.8438 -12.5365 0.8625 34 1 0.9354 -9.8231 -0.0021 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143203189.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:00:09 Heat of formation + Delta-G solvation = -164.762600 kcal Electronic energy + Delta-G solvation = -20192.259926 eV Core-core repulsion = 16668.519274 eV Total energy + Delta-G solvation = -3523.740652 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.65621 -40.74836 -39.87958 -38.00980 -37.40166 -35.45200 -35.07499 -31.91363 -31.54311 -30.86747 -28.52868 -25.67872 -24.40699 -23.74321 -21.46644 -21.35959 -19.85563 -18.85237 -18.55803 -18.08134 -17.67206 -17.18954 -16.86302 -16.67132 -16.35042 -16.11491 -15.79207 -15.61566 -15.16292 -14.81942 -14.34553 -14.14829 -14.10584 -13.92916 -13.20458 -13.10681 -12.95504 -12.77469 -12.63353 -12.56659 -12.04310 -11.42696 -11.34596 -11.05496 -10.63002 -10.59806 -10.13081 -10.06114 -9.71530 -8.24511 -6.32423 -0.63950 0.11813 1.09962 1.41631 1.42048 1.57185 1.83838 2.13923 2.44702 2.47166 2.77210 3.05007 3.11021 3.17074 3.70985 3.86616 4.08291 4.23361 4.27174 4.33141 4.51499 4.60745 4.78784 4.98514 5.07923 5.12228 5.13481 5.24656 5.43138 5.53975 5.73945 6.03391 6.24121 6.56235 6.61370 6.82781 6.87187 7.32409 7.44371 8.88162 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.048761 B = 0.002768 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.091801 B =10114.862843 C =10663.441025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.006 3.994 3 Si 0.968 3.032 4 H -0.271 1.271 5 H -0.274 1.274 6 H -0.273 1.273 7 C -0.534 4.534 8 H 0.061 0.939 9 C 0.005 3.995 10 C 0.525 3.475 11 O -0.574 6.574 12 N -0.730 5.730 13 C 0.070 3.930 14 C 0.405 3.595 15 O -0.476 6.476 16 C -0.172 4.172 17 C -0.053 4.053 18 C -0.139 4.139 19 C 0.120 3.880 20 O -0.497 6.497 21 C 0.060 3.940 22 O -0.499 6.499 23 C -0.080 4.080 24 H 0.267 0.733 25 H 0.040 0.960 26 H 0.041 0.959 27 H 0.410 0.590 28 H 0.114 0.886 29 H 0.117 0.883 30 H 0.164 0.836 31 H 0.167 0.833 32 H 0.416 0.584 33 H 0.409 0.591 34 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.364 -25.759 3.506 27.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.192 4.192 3 Si 0.793 3.207 4 H -0.195 1.195 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.572 4.572 8 H 0.079 0.921 9 C -0.035 4.035 10 C 0.315 3.685 11 O -0.453 6.453 12 N -0.386 5.386 13 C -0.054 4.054 14 C 0.284 3.716 15 O -0.353 6.353 16 C -0.174 4.174 17 C -0.072 4.072 18 C -0.157 4.157 19 C 0.074 3.926 20 O -0.311 6.311 21 C 0.015 3.985 22 O -0.312 6.312 23 C -0.098 4.098 24 H 0.076 0.924 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.247 0.753 28 H 0.131 0.869 29 H 0.135 0.865 30 H 0.181 0.819 31 H 0.185 0.815 32 H 0.277 0.723 33 H 0.268 0.732 34 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 8.429 -25.414 2.322 26.876 hybrid contribution -0.513 0.561 0.938 1.207 sum 7.916 -24.853 3.260 26.286 Atomic orbital electron populations 1.70060 1.07338 1.28060 1.51310 1.25864 0.95849 1.03018 0.94504 0.85345 0.78725 0.78564 0.78097 1.19520 1.19924 1.19865 1.21416 0.93845 0.90968 1.50988 0.92123 1.19098 0.94439 0.91150 0.98790 1.21334 0.89942 0.84010 0.73257 1.90510 1.18548 1.85334 1.50952 1.45921 1.11141 1.04728 1.76778 1.21747 0.93358 0.84264 1.06042 1.22546 0.88586 0.90320 0.70109 1.90542 1.17135 1.89785 1.37822 1.20107 0.95087 0.92878 1.09294 1.21685 0.91770 1.00160 0.93541 1.21614 1.02402 0.90204 1.01494 1.19234 0.88880 0.86873 0.97610 1.84769 1.75304 1.35432 1.35643 1.18679 0.89754 0.85816 1.04285 1.84899 1.76236 1.34645 1.35394 1.21616 1.01248 0.90775 0.96205 0.92426 0.94247 0.94145 0.75258 0.86851 0.86495 0.81891 0.81510 0.72286 0.73169 0.84619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.13 13.29 21.45 0.28 -54.84 16 2 C 0.01 0.34 5.46 84.66 0.46 0.80 16 3 Si 0.97 45.30 29.54 68.60 2.03 47.33 16 4 H -0.27 -12.58 7.11 99.48 0.71 -11.88 16 5 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 6 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 7 C -0.53 -31.52 8.92 25.60 0.23 -31.29 16 8 H 0.06 3.71 6.75 -2.91 -0.02 3.69 16 9 C 0.00 0.25 5.46 29.10 0.16 0.40 16 10 C 0.53 23.90 7.82 87.66 0.69 24.59 16 11 O -0.57 -28.95 15.46 -3.04 -0.05 -28.99 16 12 N -0.73 -25.50 5.53 -466.78 -2.58 -28.08 16 13 C 0.07 1.80 4.75 85.63 0.41 2.20 16 14 C 0.40 9.67 7.18 27.95 0.20 9.87 16 15 O -0.48 -14.22 15.65 -3.07 -0.05 -14.27 16 16 C -0.17 -3.24 5.87 -20.15 -0.12 -3.36 16 17 C -0.05 -0.73 9.46 22.56 0.21 -0.51 16 18 C -0.14 -1.61 9.96 22.30 0.22 -1.38 16 19 C 0.12 1.64 6.73 22.73 0.15 1.80 16 20 O -0.50 -5.54 13.26 -76.63 -1.02 -6.55 16 21 C 0.06 0.98 6.71 22.52 0.15 1.13 16 22 O -0.50 -7.36 13.28 -79.48 -1.06 -8.42 16 23 C -0.08 -1.51 9.52 22.66 0.22 -1.30 16 24 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16 25 H 0.04 2.12 8.14 -2.39 -0.02 2.10 16 26 H 0.04 2.16 8.14 -2.39 -0.02 2.14 16 27 H 0.41 13.78 7.44 -92.71 -0.69 13.09 16 28 H 0.11 2.68 8.08 -2.38 -0.02 2.66 16 29 H 0.12 2.67 8.08 -2.39 -0.02 2.65 16 30 H 0.16 1.60 7.03 -2.91 -0.02 1.58 16 31 H 0.17 1.11 8.06 -2.91 -0.02 1.08 16 32 H 0.42 0.11 9.06 -74.06 -0.67 -0.56 16 33 H 0.41 1.67 9.06 -74.06 -0.67 1.00 16 34 H 0.14 2.77 7.64 -2.91 -0.02 2.75 16 Total: -1.00 -79.35 310.96 -0.30 -79.65 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: -0.84 Total: 11.22 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: 2.98 Total: 2.95 kcal Atomic # 7 Polarization: -80.62 SS G_CDS: -2.30 Total: -82.92 kcal Atomic # 8 Polarization: -56.07 SS G_CDS: -2.17 Total: -58.23 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -79.35 -0.30 -79.65 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143203189.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.112 kcal (2) G-P(sol) polarization free energy of solvation -79.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds