Wall clock time and date at job start Fri Apr 10 2020 14:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 119.99772 * 2 1 4 4 H 1.48498 * 109.47088 * 240.00180 * 3 2 1 5 5 H 1.48499 * 109.47358 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46472 * 120.00292 * 3 2 1 7 7 C 1.37868 * 120.00045 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00238 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99960 * 359.97438 * 7 2 1 10 10 N 1.46507 * 109.47202 * 180.02562 * 9 7 2 11 11 C 1.34773 * 120.00361 * 179.97438 * 10 9 7 12 12 O 1.21587 * 119.99713 * 0.02562 * 11 10 9 13 13 C 1.47594 * 120.00311 * 180.02562 * 11 10 9 14 14 C 1.39740 * 120.08984 * 180.02562 * 13 11 10 15 15 C 1.37701 * 119.91009 * 180.30153 * 14 13 11 16 16 C 1.39001 * 120.09036 * 359.43945 * 15 14 13 17 17 O 1.35703 * 119.91238 * 180.25651 * 16 15 14 18 18 C 1.42896 * 117.00248 * 0.30191 * 17 16 15 19 19 C 1.50698 * 109.47488 * 179.97438 * 18 17 16 20 20 O 1.20827 * 119.99698 * 359.97438 * 19 18 17 21 21 O 1.34226 * 120.00239 * 180.02562 * 19 18 17 22 22 C 1.38991 * 120.17182 * 0.55638 * 16 15 14 23 23 C 1.37709 * 120.09342 * 359.72834 * 22 16 15 24 24 H 0.97000 * 119.99888 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.47200 * 60.00604 * 9 7 2 26 26 H 1.08991 * 109.47527 * 299.99897 * 9 7 2 27 27 H 0.97004 * 119.99940 * 0.02562 * 10 9 7 28 28 H 1.08002 * 120.04019 * 0.02562 * 14 13 11 29 29 H 1.08004 * 119.95167 * 179.69662 * 15 14 13 30 30 H 1.09007 * 109.47438 * 299.99775 * 18 17 16 31 31 H 1.09005 * 109.47494 * 59.99569 * 18 17 16 32 32 H 0.96704 * 117.00255 * 180.02562 * 21 19 18 33 33 H 1.07999 * 119.95502 * 179.69764 * 22 16 15 34 34 H 1.08003 * 120.04475 * 179.97438 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 1.7539 -4.8833 0.0000 12 8 0.5585 -5.1055 0.0000 13 6 2.7130 -6.0052 0.0006 14 6 2.2492 -7.3234 0.0006 15 6 3.1473 -8.3672 0.0074 16 6 4.5135 -8.1111 0.0025 17 8 5.3954 -9.1426 0.0040 18 6 4.8492 -10.4631 0.0039 19 6 5.9701 -11.4703 0.0050 20 8 7.1189 -11.0958 0.0053 21 8 5.6924 -12.7835 0.0047 22 6 4.9788 -6.8014 0.0024 23 6 4.0872 -5.7519 0.0015 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8903 26 1 0.6247 -2.5571 0.8896 27 1 3.1567 -3.4354 -0.0002 28 1 1.1878 -7.5231 -0.0003 29 1 2.7896 -9.3863 0.0123 30 1 4.2345 -10.6021 0.8933 31 1 4.2365 -10.6029 -0.8867 32 1 6.4445 -13.3914 0.0058 33 1 6.0410 -6.6064 0.0035 34 1 4.4495 -4.7345 0.0018 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601068239.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:00:34 Heat of formation + Delta-G solvation = -165.626174 kcal Electronic energy + Delta-G solvation = -20053.472928 eV Core-core repulsion = 16529.694829 eV Total energy + Delta-G solvation = -3523.778099 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.76676 -41.09923 -40.26660 -38.13188 -37.12326 -36.21206 -34.42381 -32.27040 -31.78936 -29.99096 -28.99223 -25.38000 -24.35509 -23.57102 -22.55327 -21.35423 -19.83761 -19.36763 -18.64559 -18.07516 -17.76026 -17.73410 -17.09185 -16.52623 -16.21770 -16.05532 -15.99603 -15.62168 -14.88335 -14.56305 -14.50790 -14.11875 -14.04374 -13.65777 -13.51811 -13.47658 -12.93739 -12.68872 -12.65440 -12.23495 -12.16971 -12.03094 -11.61556 -11.51113 -10.92961 -10.79488 -10.12408 -9.93138 -9.32413 -8.28640 -6.45515 -0.14387 0.30292 1.06180 1.24320 1.44076 1.48259 1.56321 1.88349 2.31400 2.54735 2.61156 2.84070 3.06322 3.66128 3.80840 3.90125 4.00095 4.03272 4.16371 4.22442 4.36783 4.53008 4.96733 5.02917 5.11426 5.20474 5.23161 5.37261 5.44751 5.48897 5.55979 5.68794 5.83845 6.18161 6.63974 6.86043 6.89136 7.22476 7.41965 8.83375 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.044479 B = 0.002696 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.366190 B =10384.898784 C =10993.817029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.004 3.996 3 Si 0.985 3.015 4 H -0.262 1.262 5 H -0.285 1.285 6 H -0.262 1.262 7 C -0.558 4.558 8 H 0.084 0.916 9 C 0.266 3.734 10 N -0.702 5.702 11 C 0.540 3.460 12 O -0.602 6.602 13 C -0.183 4.183 14 C -0.029 4.029 15 C -0.204 4.204 16 C 0.154 3.846 17 O -0.309 6.309 18 C 0.054 3.946 19 C 0.491 3.509 20 O -0.542 6.542 21 O -0.500 6.500 22 C -0.155 4.155 23 C -0.041 4.041 24 H 0.269 0.731 25 H -0.010 1.010 26 H -0.010 1.010 27 H 0.407 0.593 28 H 0.134 0.866 29 H 0.175 0.825 30 H 0.140 0.860 31 H 0.140 0.860 32 H 0.437 0.563 33 H 0.155 0.845 34 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.310 -24.006 0.015 27.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.196 4.196 3 Si 0.808 3.192 4 H -0.186 1.186 5 H -0.211 1.211 6 H -0.186 1.186 7 C -0.595 4.595 8 H 0.102 0.898 9 C 0.143 3.857 10 N -0.351 5.351 11 C 0.329 3.671 12 O -0.486 6.486 13 C -0.187 4.187 14 C -0.048 4.048 15 C -0.222 4.222 16 C 0.108 3.892 17 O -0.223 6.223 18 C -0.021 4.021 19 C 0.334 3.666 20 O -0.432 6.432 21 O -0.315 6.315 22 C -0.173 4.173 23 C -0.060 4.060 24 H 0.078 0.922 25 H 0.008 0.992 26 H 0.008 0.992 27 H 0.244 0.756 28 H 0.152 0.848 29 H 0.192 0.808 30 H 0.157 0.843 31 H 0.157 0.843 32 H 0.301 0.699 33 H 0.173 0.827 34 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 12.525 -23.660 0.014 26.771 hybrid contribution 0.509 0.661 0.000 0.834 sum 13.034 -22.999 0.014 26.436 Atomic orbital electron populations 1.70131 1.08251 1.28664 1.49795 1.26069 0.95802 1.03900 0.93801 0.85199 0.77910 0.76537 0.79524 1.18627 1.21086 1.18636 1.21573 0.94332 0.90484 1.53157 0.89753 1.18596 0.88655 0.84099 0.94342 1.46141 1.11311 1.05417 1.72275 1.18915 0.88254 0.83899 0.76046 1.90692 1.18653 1.85641 1.53632 1.19884 0.93673 0.93492 1.11605 1.21146 1.00886 0.90437 0.92321 1.21442 0.90808 1.01357 1.08577 1.19218 0.88375 0.87475 0.94148 1.86003 1.34305 1.13500 1.88448 1.22281 0.92799 0.78287 1.08718 1.22851 0.89111 0.83295 0.71388 1.90792 1.24673 1.81347 1.46344 1.84402 1.45853 1.16350 1.84908 1.20528 1.01583 0.88842 1.06363 1.21288 0.90624 1.00329 0.93777 0.92206 0.99177 0.99187 0.75607 0.84813 0.80806 0.84289 0.84300 0.69949 0.82700 0.83342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.26 13.29 21.44 0.28 -55.98 16 2 C 0.00 0.22 5.46 84.65 0.46 0.69 16 3 Si 0.99 42.34 29.54 68.60 2.03 44.36 16 4 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 5 H -0.29 -12.17 7.11 99.48 0.71 -11.46 16 6 H -0.26 -10.64 7.11 99.48 0.71 -9.94 16 7 C -0.56 -30.52 9.28 25.60 0.24 -30.28 16 8 H 0.08 4.14 7.60 -2.91 -0.02 4.12 16 9 C 0.27 14.83 5.43 85.63 0.46 15.30 16 10 N -0.70 -30.85 5.50 -469.95 -2.58 -33.44 16 11 C 0.54 23.02 7.76 86.71 0.67 23.70 16 12 O -0.60 -30.92 16.34 -3.99 -0.07 -30.98 16 13 C -0.18 -5.70 5.87 -20.08 -0.12 -5.82 16 14 C -0.03 -0.74 9.58 22.51 0.22 -0.53 16 15 C -0.20 -3.59 9.01 22.33 0.20 -3.38 16 16 C 0.15 2.93 6.70 22.63 0.15 3.08 16 17 O -0.31 -5.50 9.66 -71.16 -0.69 -6.19 16 18 C 0.05 0.50 5.32 71.24 0.38 0.88 16 19 C 0.49 6.17 8.40 71.24 0.60 6.76 16 20 O -0.54 -12.02 17.26 28.39 0.49 -11.53 16 21 O -0.50 -2.94 13.42 -51.38 -0.69 -3.63 16 22 C -0.15 -3.21 9.97 22.33 0.22 -2.99 16 23 C -0.04 -1.02 9.53 22.51 0.21 -0.80 16 24 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 25 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 26 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 27 H 0.41 14.72 6.34 -92.71 -0.59 14.13 16 28 H 0.13 3.60 7.64 -2.91 -0.02 3.57 16 29 H 0.17 1.54 6.28 -2.91 -0.02 1.52 16 30 H 0.14 0.54 7.64 -2.38 -0.02 0.52 16 31 H 0.14 0.54 7.67 -2.38 -0.02 0.52 16 32 H 0.44 -0.75 9.10 -74.05 -0.67 -1.42 16 33 H 0.16 2.66 8.06 -2.91 -0.02 2.64 16 34 H 0.15 3.20 6.39 -2.91 -0.02 3.19 16 Total: -1.00 -82.54 309.95 2.39 -80.15 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -0.09 Total: 10.64 kcal Atomic # 6 Polarization: 2.90 SS G_CDS: 3.70 Total: 6.60 kcal Atomic # 7 Polarization: -87.12 SS G_CDS: -2.30 Total: -89.42 kcal Atomic # 8 Polarization: -51.39 SS G_CDS: -0.95 Total: -52.34 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.36 kcal Total: -82.54 2.39 -80.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601068239.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.474 kcal (2) G-P(sol) polarization free energy of solvation -82.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds