Wall clock time and date at job start Fri Apr 10 2020 14:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31366 * 1 3 3 Si 1.86796 * 119.99777 * 2 1 4 4 H 1.48498 * 109.47359 * 274.93679 * 3 2 1 5 5 H 1.48504 * 109.47292 * 34.93608 * 3 2 1 6 6 H 1.48503 * 109.47464 * 154.93669 * 3 2 1 7 7 C 1.39049 * 120.00397 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99577 * 340.50038 * 7 2 1 9 9 N 1.36869 * 120.00214 * 160.50241 * 7 2 1 10 10 C 1.46498 * 119.99749 * 322.68537 * 9 7 2 11 11 C 1.50701 * 109.47174 * 275.71157 * 10 9 7 12 12 O 1.20826 * 119.99909 * 359.97438 * 11 10 9 13 13 O 1.34228 * 120.00427 * 180.02562 * 11 10 9 14 14 C 1.34781 * 120.00017 * 142.68752 * 9 7 2 15 15 O 1.21590 * 120.00114 * 5.34389 * 14 9 7 16 16 C 1.47725 * 119.99734 * 185.34606 * 14 9 7 17 17 C 1.39666 * 120.15055 * 314.49223 * 16 14 9 18 18 C 1.37911 * 119.84612 * 180.02562 * 17 16 14 19 19 C 1.38405 * 120.15259 * 359.71840 * 18 17 16 20 20 C 1.38358 * 120.30348 * 0.55640 * 19 18 17 21 21 C 1.50696 * 119.92629 * 179.72300 * 20 19 18 22 22 O 1.42903 * 109.46865 * 269.72630 * 21 20 19 23 23 C 1.37965 * 120.14852 * 359.44873 * 20 19 18 24 24 H 0.96994 * 119.99802 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.47364 * 35.70852 * 10 9 7 26 26 H 1.09003 * 109.47234 * 155.71537 * 10 9 7 27 27 H 0.96691 * 117.00305 * 179.97438 * 13 11 10 28 28 H 1.08003 * 120.07735 * 359.97438 * 17 16 14 29 29 H 1.07997 * 119.92615 * 180.02562 * 18 17 16 30 30 H 1.07997 * 119.84994 * 180.27810 * 19 18 17 31 31 H 1.08994 * 109.47201 * 149.72814 * 21 20 19 32 32 H 1.08995 * 109.47206 * 29.72354 * 21 20 19 33 33 H 0.96701 * 113.99557 * 179.97438 * 22 21 20 34 34 H 1.08000 * 120.07478 * 180.25376 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2476 1.6177 0.0000 4 1 2.3907 2.1067 -1.3948 5 1 1.5011 2.6203 0.8018 6 1 3.5935 1.4124 0.5931 7 6 2.0090 -1.2041 0.0005 8 1 1.5154 -2.1126 0.3132 9 7 3.3188 -1.2383 -0.3951 10 6 3.7724 -0.3907 -1.5005 11 6 3.4932 -1.0816 -2.8105 12 8 2.9696 -2.1705 -2.8196 13 8 3.8272 -0.4878 -3.9670 14 6 4.1913 -2.0517 0.2324 15 8 3.7971 -2.8253 1.0836 16 6 5.6266 -2.0031 -0.1140 17 6 6.0246 -1.9752 -1.4524 18 6 7.3662 -1.9305 -1.7687 19 6 8.3171 -1.9074 -0.7633 20 6 7.9300 -1.9405 0.5646 21 6 8.9728 -1.9213 1.6524 22 8 9.3436 -3.2618 1.9804 23 6 6.5913 -1.9854 0.8952 24 1 -0.4849 0.8400 -0.0004 25 1 3.2408 0.5604 -1.4710 26 1 4.8433 -0.2116 -1.4053 27 1 3.6287 -0.9699 -4.7813 28 1 5.2835 -1.9895 -2.2380 29 1 7.6755 -1.9084 -2.8032 30 1 9.3663 -1.8678 -1.0165 31 1 8.5665 -1.4300 2.5365 32 1 9.8504 -1.3763 1.3048 33 1 10.0133 -3.3258 2.6751 34 1 6.2904 -2.0071 1.9322 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601071609.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:00:42 Heat of formation + Delta-G solvation = -115.929377 kcal Electronic energy + Delta-G solvation = -22039.734210 eV Core-core repulsion = 18518.111125 eV Total energy + Delta-G solvation = -3521.623084 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.45775 -39.32234 -38.09704 -36.53674 -35.78574 -34.89238 -32.47012 -31.55918 -30.85352 -28.21791 -26.09544 -25.47689 -22.83533 -21.78961 -21.57771 -19.22117 -17.85571 -17.56854 -17.41401 -16.72602 -16.60989 -16.07373 -15.57921 -15.40369 -15.02324 -14.57564 -14.03256 -13.77506 -13.50819 -13.38168 -12.91961 -12.71924 -12.51602 -12.26107 -12.09643 -12.08025 -11.36052 -11.17221 -11.06153 -10.84911 -10.60064 -10.20939 -10.17298 -10.01018 -9.30105 -8.85722 -8.78892 -8.60270 -8.03173 -6.50984 -4.09323 1.17951 1.41852 2.59757 2.88912 3.05873 3.11599 3.15445 3.52471 3.89754 3.98749 4.22655 4.42770 4.75765 4.88986 4.94763 5.06736 5.14400 5.20930 5.31643 5.34524 5.47317 5.56252 5.63872 5.76373 5.97357 6.10106 6.44237 6.54438 6.60395 6.83261 6.98548 7.35918 7.48048 8.10976 8.26936 8.35844 8.78048 9.12807 9.51942 10.60389 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.019212 B = 0.006504 C = 0.005720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.064865 B = 4304.187661 C = 4894.133991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.059 3.941 3 Si 0.861 3.139 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.257 1.257 7 C -0.310 4.310 8 H 0.113 0.887 9 N -0.440 5.440 10 C 0.091 3.909 11 C 0.455 3.545 12 O -0.483 6.483 13 O -0.525 6.525 14 C 0.514 3.486 15 O -0.539 6.539 16 C -0.107 4.107 17 C -0.102 4.102 18 C -0.124 4.124 19 C -0.094 4.094 20 C -0.101 4.101 21 C 0.120 3.880 22 O -0.566 6.566 23 C -0.054 4.054 24 H 0.277 0.723 25 H 0.104 0.896 26 H 0.115 0.885 27 H 0.402 0.598 28 H 0.120 0.880 29 H 0.127 0.873 30 H 0.123 0.877 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.378 0.622 34 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.648 3.247 -3.744 18.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C -0.148 4.148 3 Si 0.688 3.312 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.181 1.181 7 C -0.437 4.437 8 H 0.131 0.869 9 N -0.161 5.161 10 C -0.035 4.035 11 C 0.294 3.706 12 O -0.368 6.368 13 O -0.337 6.337 14 C 0.303 3.697 15 O -0.419 6.419 16 C -0.111 4.111 17 C -0.121 4.121 18 C -0.142 4.142 19 C -0.112 4.112 20 C -0.101 4.101 21 C 0.043 3.957 22 O -0.371 6.371 23 C -0.073 4.073 24 H 0.088 0.912 25 H 0.121 0.879 26 H 0.133 0.867 27 H 0.260 0.740 28 H 0.138 0.862 29 H 0.145 0.855 30 H 0.141 0.859 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.224 0.776 34 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 16.691 2.712 -3.370 17.243 hybrid contribution 0.430 0.832 -0.393 1.016 sum 17.122 3.544 -3.763 17.885 Atomic orbital electron populations 1.69699 1.06093 1.28128 1.44791 1.25388 0.95293 0.98134 0.95949 0.87176 0.81600 0.84121 0.78340 1.19578 1.20414 1.18109 1.19097 0.83329 0.96882 1.44440 0.86917 1.43250 1.09680 1.38198 1.25009 1.21754 1.02863 0.95816 0.83066 1.24382 0.75246 0.84988 0.85983 1.90756 1.37665 1.21018 1.87329 1.84572 1.78410 1.53601 1.17152 1.18090 0.84181 0.84325 0.83071 1.90686 1.78777 1.38311 1.34128 1.20340 0.95072 1.01894 0.93751 1.21556 0.96480 0.98527 0.95507 1.21019 0.92462 1.01353 0.99392 1.21067 0.99351 0.98832 0.91974 1.19506 0.93536 1.02958 0.94124 1.20950 0.95272 0.83915 0.95583 1.86612 1.63067 1.26753 1.60714 1.21052 0.91099 0.95693 0.99442 0.91241 0.87917 0.86731 0.73965 0.86183 0.85507 0.85910 0.92539 0.92762 0.77556 0.85047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.45 13.95 55.50 0.77 -23.67 16 2 C 0.06 1.63 5.37 -17.45 -0.09 1.53 16 3 Si 0.86 19.46 24.84 -169.99 -4.22 15.24 16 4 H -0.27 -5.61 6.72 56.52 0.38 -5.23 16 5 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 6 H -0.26 -5.60 7.11 56.52 0.40 -5.19 16 7 C -0.31 -8.92 9.24 -15.00 -0.14 -9.06 16 8 H 0.11 3.68 7.86 -52.48 -0.41 3.26 16 9 N -0.44 -11.02 1.73 -117.21 -0.20 -11.23 16 10 C 0.09 1.88 4.47 -5.19 -0.02 1.86 16 11 C 0.45 8.94 5.93 36.01 0.21 9.15 16 12 O -0.48 -11.26 16.88 -18.75 -0.32 -11.57 16 13 O -0.53 -7.69 13.42 -39.25 -0.53 -8.22 16 14 C 0.51 12.72 7.22 -12.38 -0.09 12.63 16 15 O -0.54 -15.27 16.84 5.29 0.09 -15.18 16 16 C -0.11 -2.12 5.06 -104.97 -0.53 -2.65 16 17 C -0.10 -1.73 7.45 -39.17 -0.29 -2.02 16 18 C -0.12 -1.67 10.03 -39.64 -0.40 -2.07 16 19 C -0.09 -1.19 9.69 -39.48 -0.38 -1.58 16 20 C -0.10 -1.43 5.50 -104.68 -0.58 -2.01 16 21 C 0.12 1.29 7.17 36.00 0.26 1.55 16 22 O -0.57 -6.48 13.64 -35.23 -0.48 -6.96 16 23 C -0.05 -0.94 9.34 -39.16 -0.37 -1.30 16 24 H 0.28 7.27 8.31 -40.82 -0.34 6.93 16 25 H 0.10 2.17 2.76 -51.93 -0.14 2.03 16 26 H 0.12 2.01 5.26 -51.93 -0.27 1.74 16 27 H 0.40 3.97 9.10 45.56 0.41 4.38 16 28 H 0.12 2.09 4.31 -52.48 -0.23 1.86 16 29 H 0.13 1.32 8.06 -52.49 -0.42 0.89 16 30 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 31 H 0.06 0.54 8.08 -51.93 -0.42 0.13 16 32 H 0.05 0.44 8.08 -51.93 -0.42 0.02 16 33 H 0.38 2.25 9.12 45.56 0.42 2.66 16 34 H 0.13 2.27 8.06 -52.49 -0.42 1.85 16 LS Contribution 295.79 15.07 4.46 4.46 Total: -1.00 -36.49 295.79 -4.34 -40.82 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -1.49 Total: 10.27 kcal Atomic # 6 Polarization: 8.46 SS G_CDS: -2.42 Total: 6.04 kcal Atomic # 7 Polarization: -35.47 SS G_CDS: 0.57 Total: -34.90 kcal Atomic # 8 Polarization: -40.69 SS G_CDS: -1.24 Total: -41.93 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -4.22 Total: 15.24 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -36.49 -4.34 -40.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601071609.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.105 kcal (2) G-P(sol) polarization free energy of solvation -36.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds