Wall clock time and date at job start Fri Apr 10 2020 13:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86801 * 119.99789 * 2 1 4 4 H 1.48502 * 109.46773 * 269.99537 * 3 2 1 5 5 H 1.48502 * 109.47309 * 29.99506 * 3 2 1 6 6 H 1.48500 * 109.47082 * 149.99936 * 3 2 1 7 7 C 1.38803 * 120.00150 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99675 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99834 * 0.02562 * 7 2 1 10 10 C 1.81001 * 99.99692 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.47021 * 179.97438 * 10 9 7 12 12 O 1.21287 * 119.99956 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00179 * 180.02562 * 11 10 9 14 14 C 1.46500 * 120.00075 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.47007 * 84.99755 * 14 13 11 16 16 C 1.52999 * 109.47317 * 179.97438 * 15 14 13 17 17 C 1.53005 * 109.47159 * 300.00546 * 16 15 14 18 18 F 1.39895 * 109.46948 * 299.99392 * 17 16 15 19 19 F 1.39900 * 109.46972 * 179.97438 * 17 16 15 20 20 C 1.52997 * 109.47452 * 59.99536 * 17 16 15 21 21 C 1.53000 * 109.47023 * 204.99547 * 14 13 11 22 22 H 0.96996 * 120.00313 * 0.02562 * 1 2 3 23 23 H 1.08999 * 109.47000 * 60.00023 * 10 9 7 24 24 H 1.08999 * 109.47045 * 299.99814 * 10 9 7 25 25 H 0.96997 * 119.99651 * 359.97438 * 13 11 10 26 26 H 1.09002 * 109.47092 * 324.99806 * 14 13 11 27 27 H 1.08996 * 109.47853 * 300.00060 * 15 14 13 28 28 H 1.09002 * 109.47153 * 60.00089 * 15 14 13 29 29 H 1.09000 * 109.47486 * 180.02562 * 16 15 14 30 30 H 1.09002 * 109.46716 * 60.00091 * 16 15 14 31 31 H 1.08993 * 109.47194 * 179.97438 * 20 17 16 32 32 H 1.09002 * 109.46695 * 59.99734 * 20 17 16 33 33 H 1.08992 * 109.47399 * 300.00063 * 21 14 13 34 34 H 1.09004 * 109.46724 * 60.00549 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4476 2.6528 0.6999 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1293 -2.7280 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9875 -5.3027 0.0012 12 8 0.7912 -5.5023 0.0021 13 7 2.8442 -6.3431 0.0018 14 6 2.3305 -7.7150 0.0030 15 6 2.0336 -8.1496 -1.4336 16 6 1.4977 -9.5827 -1.4325 17 6 2.5438 -10.5180 -0.8225 18 9 3.7188 -10.4602 -1.5795 19 9 2.0534 -11.8282 -0.8210 20 6 2.8407 -10.0834 0.6141 21 6 3.3762 -8.6506 0.6130 22 1 -0.4850 0.8400 -0.0004 23 1 3.1245 -3.7312 0.8905 24 1 3.1245 -3.7313 -0.8895 25 1 3.8010 -6.1834 0.0015 26 1 1.4149 -7.7597 0.5927 27 1 1.2887 -7.4832 -1.8683 28 1 2.9492 -8.1050 -2.0233 29 1 1.2866 -9.8925 -2.4560 30 1 0.5821 -9.6277 -0.8427 31 1 3.5855 -10.7499 1.0487 32 1 1.9251 -10.1283 1.2038 33 1 4.2918 -8.6060 0.0234 34 1 3.5877 -8.3410 1.6365 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342085699.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 13:59:49 Heat of formation + Delta-G solvation = -160.141917 kcal Electronic energy + Delta-G solvation = -19409.290148 eV Core-core repulsion = 15910.106299 eV Total energy + Delta-G solvation = -3499.183848 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.085 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.21441 -47.20116 -39.70124 -37.51972 -33.72431 -32.44882 -31.50905 -30.08575 -27.83763 -25.49611 -23.55744 -22.73386 -20.51653 -20.27633 -17.92663 -17.65100 -17.09510 -16.52496 -16.40849 -16.11571 -15.08582 -14.82235 -14.36554 -14.18496 -14.12583 -13.75209 -13.54675 -13.43327 -13.08583 -12.80078 -12.78359 -12.52052 -12.24671 -11.96459 -11.86292 -11.57525 -11.08005 -11.04960 -10.96569 -10.77328 -10.50505 -9.83628 -9.44784 -9.09204 -8.97044 -8.26528 -6.52495 -6.23719 -3.94492 2.95802 3.02854 3.21078 3.25974 3.29734 3.46618 3.61703 3.77602 4.04561 4.18333 4.18764 4.49643 4.62877 4.79035 4.91308 5.00592 5.11438 5.11683 5.25553 5.27800 5.41694 5.50560 5.60581 5.64458 5.67553 5.85639 5.93450 6.04252 6.11331 6.57086 7.57642 7.65108 8.33200 8.55466 9.21735 10.83706 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.056096 B = 0.003068 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.026255 B = 9124.391136 C = 9285.611299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.154 4.154 11 C 0.533 3.467 12 O -0.516 6.516 13 N -0.734 5.734 14 C 0.144 3.856 15 C -0.132 4.132 16 C -0.154 4.154 17 C 0.286 3.714 18 F -0.200 7.200 19 F -0.204 7.204 20 C -0.153 4.153 21 C -0.127 4.127 22 H 0.269 0.731 23 H 0.090 0.910 24 H 0.090 0.910 25 H 0.399 0.601 26 H 0.093 0.907 27 H 0.087 0.913 28 H 0.074 0.926 29 H 0.089 0.911 30 H 0.098 0.902 31 H 0.091 0.909 32 H 0.098 0.902 33 H 0.078 0.922 34 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.074 -19.870 0.008 21.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.305 4.305 11 C 0.320 3.680 12 O -0.390 6.390 13 N -0.388 5.388 14 C 0.038 3.962 15 C -0.171 4.171 16 C -0.193 4.193 17 C 0.250 3.750 18 F -0.181 7.181 19 F -0.185 7.185 20 C -0.192 4.192 21 C -0.165 4.165 22 H 0.078 0.922 23 H 0.108 0.892 24 H 0.108 0.892 25 H 0.233 0.767 26 H 0.111 0.889 27 H 0.106 0.894 28 H 0.093 0.907 29 H 0.108 0.892 30 H 0.116 0.884 31 H 0.109 0.891 32 H 0.117 0.883 33 H 0.097 0.903 34 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 5.914 -20.111 0.001 20.963 hybrid contribution 2.520 1.165 -0.139 2.780 sum 8.434 -18.946 -0.138 20.739 Atomic orbital electron populations 1.70011 1.05959 1.27488 1.46822 1.24993 0.95028 0.99042 0.94504 0.86166 0.79413 0.81545 0.78365 1.20259 1.20745 1.19685 1.22868 0.94913 0.91649 1.59017 0.90918 1.85387 1.04889 0.96349 1.96729 1.23539 1.06623 0.95343 1.04975 1.20340 0.86554 0.86299 0.74838 1.90701 1.15325 1.85561 1.47442 1.46028 1.09991 1.04979 1.77807 1.20923 0.97929 0.81281 0.96047 1.21945 1.02826 0.94429 0.97872 1.22486 0.98232 0.95049 1.03537 1.21179 0.81772 0.79482 0.92543 1.92990 1.50323 1.96359 1.78391 1.93006 1.88124 1.39972 1.97358 1.22441 1.04718 0.98253 0.93748 1.21773 0.99099 0.92648 1.02970 0.92163 0.89191 0.89180 0.76709 0.88908 0.89432 0.90734 0.89209 0.88389 0.89067 0.88328 0.90297 0.89598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.94 13.22 55.49 0.73 -25.20 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.20 29.55 -169.99 -5.02 16.17 16 4 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 6 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.54 -15.10 9.50 30.94 0.29 -14.81 16 8 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 9 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 10 C -0.15 -3.00 6.16 36.01 0.22 -2.78 16 11 C 0.53 9.39 7.81 -10.99 -0.09 9.30 16 12 O -0.52 -11.09 15.52 5.55 0.09 -11.00 16 13 N -0.73 -8.96 5.08 -53.81 -0.27 -9.24 16 14 C 0.14 1.50 2.46 -67.93 -0.17 1.33 16 15 C -0.13 -1.36 5.37 -26.73 -0.14 -1.50 16 16 C -0.15 -1.36 5.45 -26.73 -0.15 -1.50 16 17 C 0.29 2.59 2.10 -26.73 -0.06 2.53 16 18 F -0.20 -2.10 16.02 2.25 0.04 -2.06 16 19 F -0.20 -2.11 17.06 2.25 0.04 -2.07 16 20 C -0.15 -1.09 5.45 -26.76 -0.15 -1.24 16 21 C -0.13 -0.96 5.27 -26.75 -0.14 -1.10 16 22 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 23 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 24 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 25 H 0.40 3.75 8.60 -40.82 -0.35 3.40 16 26 H 0.09 1.12 7.58 -51.93 -0.39 0.72 16 27 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.07 0.74 7.80 -51.93 -0.41 0.34 16 29 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.08 0.57 7.80 -51.93 -0.41 0.16 16 34 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 306.45 15.07 4.62 4.62 Total: -1.00 -33.48 306.45 -6.94 -40.42 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: -4.48 Total: -0.05 kcal Atomic # 6 Polarization: -7.31 SS G_CDS: -0.47 Total: -7.77 kcal Atomic # 7 Polarization: -34.90 SS G_CDS: 0.46 Total: -34.44 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: 0.09 Total: -11.00 kcal Atomic # 9 Polarization: -4.21 SS G_CDS: 0.07 Total: -4.13 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -33.48 -6.94 -40.42 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342085699.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.722 kcal (2) G-P(sol) polarization free energy of solvation -33.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds