Wall clock time and date at job start Fri Apr 10 2020 14:01:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86806 * 119.99705 * 2 1 4 4 H 1.48503 * 109.47116 * 359.97438 * 3 2 1 5 5 H 1.48506 * 109.47176 * 119.99803 * 3 2 1 6 6 H 1.48500 * 109.46960 * 239.99922 * 3 2 1 7 7 C 1.37877 * 120.00547 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00522 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99830 * 0.02562 * 7 2 1 10 10 O 1.42908 * 112.94382 * 50.32587 * 9 7 2 11 11 C 1.53946 * 113.74107 * 278.74179 * 9 7 2 12 12 N 1.47817 * 86.03448 * 222.08416 * 11 9 7 13 13 C 1.34773 * 134.45506 * 204.64624 * 12 11 9 14 14 O 1.21621 * 120.00350 * 174.54653 * 13 12 11 15 15 C 1.47300 * 120.00132 * 354.54338 * 13 12 11 16 16 C 1.39857 * 120.13309 * 335.25713 * 15 13 12 17 17 C 1.37549 * 119.96026 * 179.76860 * 16 15 13 18 18 C 1.39184 * 120.23998 * 0.50343 * 17 16 15 19 19 O 1.35721 * 119.85925 * 179.76856 * 18 17 16 20 20 C 1.38686 * 120.27773 * 359.74670 * 18 17 16 21 21 C 1.38442 * 120.02609 * 359.97438 * 20 18 17 22 22 O 1.35653 * 120.11602 * 180.02562 * 21 20 18 23 23 C 1.47581 * 91.05086 * 24.54336 * 12 11 9 24 24 H 0.97002 * 120.00394 * 0.02562 * 1 2 3 25 25 H 0.96701 * 114.00196 * 309.66972 * 10 9 7 26 26 H 1.08998 * 113.76610 * 336.34093 * 11 9 7 27 27 H 1.09004 * 113.77330 * 107.74431 * 11 9 7 28 28 H 1.07996 * 120.01922 * 0.02562 * 16 15 13 29 29 H 1.08001 * 119.87397 * 180.25471 * 17 16 15 30 30 H 0.96700 * 113.99732 * 269.98086 * 19 18 17 31 31 H 1.07993 * 119.98525 * 180.02562 * 20 18 17 32 32 H 0.96708 * 114.00164 * 269.97843 * 22 21 20 33 33 H 1.09001 * 113.76922 * 221.14964 * 23 12 11 34 34 H 1.08994 * 113.76576 * 89.75737 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1028 1.6966 1.2126 6 1 3.1028 1.6965 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0005 10 8 0.2454 -2.5618 -1.0128 11 6 0.7553 -2.9285 1.3933 12 7 1.1915 -4.2895 1.0159 13 6 0.8420 -5.5332 1.4001 14 8 1.3147 -6.5001 0.8336 15 6 -0.1124 -5.7215 2.5061 16 6 -0.2656 -4.7276 3.4782 17 6 -1.1614 -4.9051 4.5068 18 6 -1.9096 -6.0757 4.5906 19 8 -2.7879 -6.2448 5.6114 20 6 -1.7619 -7.0700 3.6350 21 6 -0.8677 -6.9007 2.5917 22 8 -0.7221 -7.8717 1.6557 23 6 2.1610 -3.7400 0.0484 24 1 -0.4851 0.8400 -0.0004 25 1 -0.3467 -1.7974 -1.0271 26 1 1.3261 -2.4964 2.2152 27 1 -0.3224 -2.8320 1.5250 28 1 0.3160 -3.8196 3.4188 29 1 -1.2816 -4.1350 5.2544 30 1 -2.4056 -6.6662 6.3933 31 1 -2.3451 -7.9762 3.7043 32 1 -0.0425 -8.5256 1.8697 33 1 2.2035 -4.2902 -0.8916 34 1 3.1454 -3.5468 0.4745 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000436987568.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:01:30 Heat of formation + Delta-G solvation = -100.843878 kcal Electronic energy + Delta-G solvation = -21666.284041 eV Core-core repulsion = 18145.315113 eV Total energy + Delta-G solvation = -3520.968928 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -40.40310 -39.16525 -38.00572 -36.87868 -35.73832 -33.93609 -32.23746 -30.74811 -29.80511 -28.18359 -25.42297 -25.38086 -23.24411 -22.54221 -20.26727 -19.17600 -18.65884 -17.52465 -17.11449 -16.69788 -16.33775 -15.63477 -15.46833 -15.10981 -14.62133 -14.33629 -14.14591 -13.87290 -13.33739 -13.12279 -12.76995 -12.37701 -12.25574 -12.05172 -11.76609 -11.57902 -11.11783 -11.05364 -10.84688 -10.71778 -10.55211 -10.31354 -9.66806 -9.24279 -8.97409 -8.78488 -8.60828 -8.42039 -7.84332 -6.40538 -4.51615 0.77853 1.18234 3.00795 3.14870 3.21373 3.23106 3.47079 3.72941 3.97624 4.17068 4.34664 4.79288 4.80272 4.89152 5.00047 5.34138 5.51405 5.58867 5.79673 5.89479 6.03233 6.14493 6.22716 6.26222 6.37070 6.43883 6.49928 6.62831 6.68588 7.07013 7.41121 7.61031 7.73331 7.80061 8.42336 8.51618 8.71941 9.19805 9.42155 10.66084 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.023243 B = 0.004896 C = 0.004304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.374231 B = 5717.599733 C = 6503.465779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.073 3.927 3 Si 0.907 3.093 4 H -0.285 1.285 5 H -0.274 1.274 6 H -0.273 1.273 7 C -0.539 4.539 8 H 0.071 0.929 9 C 0.240 3.760 10 O -0.571 6.571 11 C 0.074 3.926 12 N -0.627 5.627 13 C 0.574 3.426 14 O -0.554 6.554 15 C -0.157 4.157 16 C -0.053 4.053 17 C -0.163 4.163 18 C 0.138 3.862 19 O -0.496 6.496 20 C -0.186 4.186 21 C 0.178 3.822 22 O -0.480 6.480 23 C 0.113 3.887 24 H 0.274 0.726 25 H 0.392 0.608 26 H 0.083 0.917 27 H 0.071 0.929 28 H 0.143 0.857 29 H 0.136 0.864 30 H 0.392 0.608 31 H 0.138 0.862 32 H 0.397 0.603 33 H 0.072 0.928 34 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.487 -8.257 11.192 13.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.130 4.130 3 Si 0.734 3.266 4 H -0.210 1.210 5 H -0.199 1.199 6 H -0.198 1.198 7 C -0.577 4.577 8 H 0.089 0.911 9 C 0.198 3.802 10 O -0.383 6.383 11 C -0.048 4.048 12 N -0.360 5.360 13 C 0.364 3.636 14 O -0.434 6.434 15 C -0.161 4.161 16 C -0.072 4.072 17 C -0.181 4.181 18 C 0.093 3.907 19 O -0.307 6.307 20 C -0.205 4.205 21 C 0.131 3.869 22 O -0.291 6.291 23 C -0.009 4.009 24 H 0.084 0.916 25 H 0.246 0.754 26 H 0.101 0.899 27 H 0.090 0.910 28 H 0.161 0.839 29 H 0.154 0.846 30 H 0.248 0.752 31 H 0.156 0.844 32 H 0.255 0.745 33 H 0.090 0.910 34 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.007 -8.824 10.128 13.582 hybrid contribution 0.655 0.984 0.864 1.464 sum -1.353 -7.840 10.992 13.569 Atomic orbital electron populations 1.69396 1.06168 1.28335 1.49791 1.25069 0.95009 0.99843 0.93051 0.86399 0.79506 0.81681 0.78986 1.21002 1.19904 1.19841 1.21459 0.93892 0.89915 1.52466 0.91058 1.19835 0.85667 0.91199 0.83509 1.86080 1.47085 1.49851 1.55288 1.24441 1.00180 0.77450 1.02772 1.50109 1.39931 1.04539 1.41405 1.17532 0.81426 0.82126 0.82477 1.90703 1.57081 1.39216 1.56449 1.20559 1.00761 0.96514 0.98228 1.21436 0.96030 0.97732 0.91970 1.21366 0.97502 0.98390 1.00889 1.18406 0.89707 0.92900 0.89692 1.84779 1.36741 1.83267 1.25906 1.21589 1.02105 1.01076 0.95762 1.18208 0.92968 0.88504 0.87181 1.84708 1.61015 1.39307 1.44086 1.23471 0.93142 0.92744 0.91496 0.91580 0.75361 0.89874 0.91015 0.83915 0.84600 0.75152 0.84373 0.74465 0.90962 0.89445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.47 11.20 55.43 0.62 -21.85 16 2 C 0.07 1.79 5.39 -17.82 -0.10 1.70 16 3 Si 0.91 19.12 29.54 -169.99 -5.02 14.10 16 4 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 5 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 6 H -0.27 -5.81 7.11 56.52 0.40 -5.40 16 7 C -0.54 -13.27 8.61 -34.44 -0.30 -13.56 16 8 H 0.07 1.70 7.81 -52.49 -0.41 1.29 16 9 C 0.24 5.70 1.40 -90.85 -0.13 5.57 16 10 O -0.57 -14.86 13.48 -35.23 -0.48 -15.34 16 11 C 0.07 1.56 5.68 -2.84 -0.02 1.55 16 12 N -0.63 -13.38 3.58 -179.43 -0.64 -14.02 16 13 C 0.57 12.11 7.75 -12.58 -0.10 12.01 16 14 O -0.55 -12.78 16.28 -15.04 -0.24 -13.02 16 15 C -0.16 -2.76 5.83 -104.83 -0.61 -3.37 16 16 C -0.05 -0.80 8.81 -39.23 -0.35 -1.15 16 17 C -0.16 -2.08 9.96 -39.48 -0.39 -2.47 16 18 C 0.14 1.69 6.70 -39.06 -0.26 1.43 16 19 O -0.50 -5.01 13.48 -18.87 -0.25 -5.26 16 20 C -0.19 -2.42 9.91 -39.34 -0.39 -2.81 16 21 C 0.18 2.81 6.68 -38.73 -0.26 2.55 16 22 O -0.48 -7.60 11.86 -38.96 -0.46 -8.06 16 23 C 0.11 2.46 8.23 -2.97 -0.02 2.43 16 24 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 25 H 0.39 10.22 6.60 45.56 0.30 10.52 16 26 H 0.08 1.61 7.70 -51.93 -0.40 1.22 16 27 H 0.07 1.55 7.86 -51.93 -0.41 1.14 16 28 H 0.14 2.12 5.53 -52.49 -0.29 1.83 16 29 H 0.14 1.43 8.06 -52.49 -0.42 1.01 16 30 H 0.39 1.81 9.06 45.56 0.41 2.23 16 31 H 0.14 1.51 8.06 -52.49 -0.42 1.09 16 32 H 0.40 4.59 9.05 45.56 0.41 5.00 16 33 H 0.07 1.61 8.14 -51.93 -0.42 1.19 16 34 H 0.09 1.70 8.09 -51.93 -0.42 1.28 16 LS Contribution 299.98 15.07 4.52 4.52 Total: -1.00 -31.22 299.98 -6.08 -37.30 By element: Atomic # 1 Polarization: 18.95 SS G_CDS: -1.21 Total: 17.74 kcal Atomic # 6 Polarization: 6.80 SS G_CDS: -2.92 Total: 3.88 kcal Atomic # 7 Polarization: -35.85 SS G_CDS: -0.02 Total: -35.87 kcal Atomic # 8 Polarization: -40.24 SS G_CDS: -1.44 Total: -41.68 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -5.02 Total: 14.10 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -31.22 -6.08 -37.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000436987568.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.540 kcal (2) G-P(sol) polarization free energy of solvation -31.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds