Wall clock time and date at job start Fri Apr 10 2020 14:01:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86806 * 119.99705 * 2 1 4 4 H 1.48503 * 109.47116 * 359.97438 * 3 2 1 5 5 H 1.48506 * 109.47176 * 119.99803 * 3 2 1 6 6 H 1.48500 * 109.46960 * 239.99922 * 3 2 1 7 7 C 1.37877 * 120.00547 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00522 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99830 * 0.02562 * 7 2 1 10 10 O 1.42908 * 112.94382 * 50.32587 * 9 7 2 11 11 C 1.53946 * 113.74107 * 278.74179 * 9 7 2 12 12 N 1.47817 * 86.03448 * 222.08416 * 11 9 7 13 13 C 1.34773 * 134.45506 * 204.64624 * 12 11 9 14 14 O 1.21621 * 120.00350 * 174.54653 * 13 12 11 15 15 C 1.47300 * 120.00132 * 354.54338 * 13 12 11 16 16 C 1.39857 * 120.13309 * 335.25713 * 15 13 12 17 17 C 1.37549 * 119.96026 * 179.76860 * 16 15 13 18 18 C 1.39184 * 120.23998 * 0.50343 * 17 16 15 19 19 O 1.35721 * 119.85925 * 179.76856 * 18 17 16 20 20 C 1.38686 * 120.27773 * 359.74670 * 18 17 16 21 21 C 1.38442 * 120.02609 * 359.97438 * 20 18 17 22 22 O 1.35653 * 120.11602 * 180.02562 * 21 20 18 23 23 C 1.47581 * 91.05086 * 24.54336 * 12 11 9 24 24 H 0.97002 * 120.00394 * 0.02562 * 1 2 3 25 25 H 0.96701 * 114.00196 * 309.66972 * 10 9 7 26 26 H 1.08998 * 113.76610 * 336.34093 * 11 9 7 27 27 H 1.09004 * 113.77330 * 107.74431 * 11 9 7 28 28 H 1.07996 * 120.01922 * 0.02562 * 16 15 13 29 29 H 1.08001 * 119.87397 * 180.25471 * 17 16 15 30 30 H 0.96700 * 113.99732 * 269.98086 * 19 18 17 31 31 H 1.07993 * 119.98525 * 180.02562 * 20 18 17 32 32 H 0.96708 * 114.00164 * 269.97843 * 22 21 20 33 33 H 1.09001 * 113.76922 * 221.14964 * 23 12 11 34 34 H 1.08994 * 113.76576 * 89.75737 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1028 1.6966 1.2126 6 1 3.1028 1.6965 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0005 10 8 0.2454 -2.5618 -1.0128 11 6 0.7553 -2.9285 1.3933 12 7 1.1915 -4.2895 1.0159 13 6 0.8420 -5.5332 1.4001 14 8 1.3147 -6.5001 0.8336 15 6 -0.1124 -5.7215 2.5061 16 6 -0.2656 -4.7276 3.4782 17 6 -1.1614 -4.9051 4.5068 18 6 -1.9096 -6.0757 4.5906 19 8 -2.7879 -6.2448 5.6114 20 6 -1.7619 -7.0700 3.6350 21 6 -0.8677 -6.9007 2.5917 22 8 -0.7221 -7.8717 1.6557 23 6 2.1610 -3.7400 0.0484 24 1 -0.4851 0.8400 -0.0004 25 1 -0.3467 -1.7974 -1.0271 26 1 1.3261 -2.4964 2.2152 27 1 -0.3224 -2.8320 1.5250 28 1 0.3160 -3.8196 3.4188 29 1 -1.2816 -4.1350 5.2544 30 1 -2.4056 -6.6662 6.3933 31 1 -2.3451 -7.9762 3.7043 32 1 -0.0425 -8.5256 1.8697 33 1 2.2035 -4.2902 -0.8916 34 1 3.1454 -3.5468 0.4745 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000436987568.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:01:29 Heat of formation + Delta-G solvation = -126.795452 kcal Electronic energy + Delta-G solvation = -21667.409386 eV Core-core repulsion = 18145.315113 eV Total energy + Delta-G solvation = -3522.094273 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.72318 -40.59803 -39.22587 -38.38271 -36.81987 -35.79054 -34.15497 -31.96540 -30.99674 -29.77264 -27.15039 -27.10961 -24.44984 -23.67429 -21.90195 -20.48372 -19.95941 -19.33199 -18.26919 -18.11756 -17.67699 -17.11855 -16.76554 -16.69377 -16.10961 -15.92141 -15.52076 -15.19338 -14.83564 -14.45726 -14.30126 -13.88945 -13.76820 -13.47343 -13.40216 -12.96247 -12.85088 -12.74574 -12.25404 -12.22251 -11.93927 -11.71674 -11.38051 -10.97624 -10.63962 -10.27108 -10.02969 -9.78213 -9.49992 -8.25487 -6.43326 -0.36109 0.12538 1.49269 1.51714 1.58754 1.69611 1.88848 2.41646 2.50847 2.92828 2.96881 3.29089 3.46080 3.68900 3.82644 4.02913 4.12425 4.28105 4.43778 4.51866 4.58706 4.71158 4.75043 4.86440 4.90076 5.08681 5.17134 5.20267 5.25525 5.54302 5.72696 5.92713 6.62659 6.68451 6.77657 6.79813 7.08946 7.30337 7.43009 8.80490 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.023243 B = 0.004896 C = 0.004304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.374231 B = 5717.599733 C = 6503.465779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.035 3.965 3 Si 0.969 3.031 4 H -0.284 1.284 5 H -0.265 1.265 6 H -0.276 1.276 7 C -0.556 4.556 8 H 0.075 0.925 9 C 0.217 3.783 10 O -0.589 6.589 11 C 0.094 3.906 12 N -0.632 5.632 13 C 0.567 3.433 14 O -0.585 6.585 15 C -0.193 4.193 16 C -0.054 4.054 17 C -0.160 4.160 18 C 0.161 3.839 19 O -0.497 6.497 20 C -0.183 4.183 21 C 0.169 3.831 22 O -0.498 6.498 23 C 0.113 3.887 24 H 0.276 0.724 25 H 0.387 0.613 26 H 0.101 0.899 27 H 0.063 0.937 28 H 0.140 0.860 29 H 0.163 0.837 30 H 0.420 0.580 31 H 0.161 0.839 32 H 0.411 0.589 33 H 0.057 0.943 34 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.998 -7.964 13.477 15.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.166 4.166 3 Si 0.794 3.206 4 H -0.209 1.209 5 H -0.189 1.189 6 H -0.202 1.202 7 C -0.594 4.594 8 H 0.093 0.907 9 C 0.176 3.824 10 O -0.401 6.401 11 C -0.028 4.028 12 N -0.364 5.364 13 C 0.359 3.641 14 O -0.468 6.468 15 C -0.196 4.196 16 C -0.073 4.073 17 C -0.178 4.178 18 C 0.115 3.885 19 O -0.312 6.312 20 C -0.201 4.201 21 C 0.123 3.877 22 O -0.312 6.312 23 C -0.009 4.009 24 H 0.085 0.915 25 H 0.241 0.759 26 H 0.119 0.881 27 H 0.082 0.918 28 H 0.158 0.842 29 H 0.181 0.819 30 H 0.282 0.718 31 H 0.179 0.821 32 H 0.271 0.729 33 H 0.075 0.925 34 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -2.506 -8.555 12.453 15.315 hybrid contribution 0.736 0.818 0.221 1.122 sum -1.770 -7.737 12.674 14.954 Atomic orbital electron populations 1.69471 1.07194 1.29016 1.50023 1.25748 0.95709 1.02584 0.92594 0.85440 0.78252 0.77973 0.78956 1.20928 1.18948 1.20159 1.21683 0.94205 0.90552 1.52991 0.90713 1.20169 0.85852 0.91947 0.84415 1.86066 1.47642 1.49731 1.56635 1.24216 0.99798 0.77138 1.01682 1.50132 1.39958 1.04934 1.41392 1.18173 0.81519 0.81377 0.82995 1.90661 1.58326 1.39875 1.57917 1.20433 1.02097 0.98658 0.98444 1.21429 0.96707 0.97051 0.92130 1.21610 0.96475 0.99245 1.00461 1.18412 0.88318 0.92027 0.89739 1.84720 1.36368 1.83612 1.26527 1.21748 1.01370 1.02215 0.94802 1.18401 0.93533 0.87936 0.87859 1.84655 1.61739 1.39800 1.44973 1.23494 0.94097 0.91841 0.91492 0.91453 0.75878 0.88077 0.91814 0.84206 0.81946 0.71839 0.82132 0.72850 0.92451 0.87248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -45.85 11.20 21.45 0.24 -45.61 16 2 C 0.03 1.67 5.39 84.66 0.46 2.13 16 3 Si 0.97 38.58 29.54 68.60 2.03 40.60 16 4 H -0.28 -11.19 7.11 99.48 0.71 -10.48 16 5 H -0.26 -10.10 7.11 99.48 0.71 -9.40 16 6 H -0.28 -11.06 7.11 99.48 0.71 -10.36 16 7 C -0.56 -27.29 8.61 25.60 0.22 -27.06 16 8 H 0.07 3.52 7.81 -2.91 -0.02 3.50 16 9 C 0.22 10.46 1.40 -10.88 -0.02 10.44 16 10 O -0.59 -31.47 13.48 -148.98 -2.01 -33.48 16 11 C 0.09 3.96 5.68 86.44 0.49 4.46 16 12 N -0.63 -27.34 3.58 -843.68 -3.02 -30.36 16 13 C 0.57 24.38 7.75 86.63 0.67 25.05 16 14 O -0.58 -27.75 16.28 15.32 0.25 -27.50 16 15 C -0.19 -6.74 5.83 -20.00 -0.12 -6.85 16 16 C -0.05 -1.58 8.81 22.50 0.20 -1.38 16 17 C -0.16 -3.60 9.96 22.33 0.22 -3.38 16 18 C 0.16 3.38 6.70 22.60 0.15 3.53 16 19 O -0.50 -7.80 13.48 -90.43 -1.22 -9.02 16 20 C -0.18 -4.28 9.91 22.43 0.22 -4.06 16 21 C 0.17 5.21 6.68 22.82 0.15 5.36 16 22 O -0.50 -15.76 11.86 -70.27 -0.83 -16.59 16 23 C 0.11 4.98 8.23 86.48 0.71 5.69 16 24 H 0.28 13.11 8.31 -92.71 -0.77 12.34 16 25 H 0.39 20.79 6.60 -74.06 -0.49 20.30 16 26 H 0.10 3.86 7.70 -2.39 -0.02 3.84 16 27 H 0.06 2.77 7.86 -2.38 -0.02 2.75 16 28 H 0.14 4.03 5.53 -2.91 -0.02 4.02 16 29 H 0.16 2.77 8.06 -2.91 -0.02 2.75 16 30 H 0.42 1.83 9.06 -74.06 -0.67 1.16 16 31 H 0.16 3.00 8.06 -2.91 -0.02 2.97 16 32 H 0.41 9.59 9.05 -74.05 -0.67 8.92 16 33 H 0.06 2.65 8.14 -2.39 -0.02 2.63 16 34 H 0.11 4.26 8.09 -2.39 -0.02 4.24 16 Total: -1.00 -67.02 299.98 -1.84 -68.85 By element: Atomic # 1 Polarization: 39.83 SS G_CDS: -0.64 Total: 39.19 kcal Atomic # 6 Polarization: 10.56 SS G_CDS: 3.37 Total: 13.92 kcal Atomic # 7 Polarization: -73.19 SS G_CDS: -2.78 Total: -75.97 kcal Atomic # 8 Polarization: -82.79 SS G_CDS: -3.81 Total: -86.60 kcal Atomic # 14 Polarization: 38.58 SS G_CDS: 2.03 Total: 40.60 kcal Total: -67.02 -1.84 -68.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000436987568.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.941 kcal (2) G-P(sol) polarization free energy of solvation -67.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds