Wall clock time and date at job start Fri Apr 10 2020 13:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 120.00003 * 2 1 4 4 H 1.48493 * 109.47211 * 240.00009 * 3 2 1 5 5 H 1.48504 * 109.47140 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.46975 * 119.99675 * 3 2 1 7 7 C 1.37869 * 119.99988 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99874 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00223 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47152 * 179.97438 * 9 7 2 11 11 O 1.45201 * 109.46840 * 179.97438 * 10 9 7 12 12 C 1.34706 * 116.99626 * 180.02562 * 11 10 9 13 13 O 1.21471 * 120.00296 * 0.02562 * 12 11 10 14 14 C 1.47749 * 119.99702 * 180.02562 * 12 11 10 15 15 C 1.39660 * 120.11702 * 359.97438 * 14 12 11 16 16 C 1.37965 * 119.99151 * 180.02562 * 15 14 12 17 17 C 1.38265 * 120.22228 * 0.02562 * 16 15 14 18 18 C 1.38950 * 120.24028 * 359.97438 * 17 16 15 19 19 N 1.39978 * 119.99955 * 180.02562 * 18 17 16 20 20 C 1.34776 * 120.00145 * 144.88597 * 19 18 17 21 21 O 1.21514 * 119.99513 * 4.62436 * 20 19 18 22 22 O 1.34649 * 120.00266 * 184.62544 * 20 19 18 23 23 C 1.38620 * 120.00219 * 0.02562 * 18 17 16 24 24 H 0.97008 * 120.00103 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.46823 * 60.00505 * 9 7 2 26 26 H 1.08998 * 109.47160 * 300.00403 * 9 7 2 27 27 H 1.08996 * 109.46915 * 60.00290 * 10 9 7 28 28 H 1.08993 * 109.47079 * 300.00105 * 10 9 7 29 29 H 1.08003 * 120.00758 * 0.02865 * 15 14 12 30 30 H 1.07990 * 119.88796 * 179.97438 * 16 15 14 31 31 H 1.08002 * 119.88118 * 179.97438 * 17 16 15 32 32 H 0.97003 * 119.99960 * 324.89311 * 19 18 17 33 33 H 0.96703 * 116.99778 * 180.02562 * 22 20 19 34 34 H 1.08001 * 120.10661 * 179.72521 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0018 11 8 1.5193 -4.9195 -0.0012 12 6 2.2530 -6.0492 -0.0017 13 8 3.4660 -5.9856 -0.0021 14 6 1.5822 -7.3657 -0.0017 15 6 0.1877 -7.4416 -0.0006 16 6 -0.4360 -8.6722 -0.0001 17 6 0.3151 -9.8331 0.0000 18 6 1.7031 -9.7686 -0.0011 19 7 2.4586 -10.9470 -0.0015 20 6 3.6256 -10.9991 -0.6737 21 8 4.0634 -9.9999 -1.2090 22 8 4.3062 -12.1582 -0.7522 23 6 2.3397 -8.5372 -0.0016 24 1 -0.4851 0.8401 -0.0004 25 1 0.6241 -2.5567 -0.8904 26 1 0.6247 -2.5571 0.8896 27 1 2.8726 -3.6047 0.8877 28 1 2.8713 -3.6039 -0.8922 29 1 -0.4025 -6.5371 -0.0003 30 1 -1.5144 -8.7290 0.0011 31 1 -0.1788 -10.7936 0.0008 32 1 2.1421 -11.7262 0.4819 33 1 5.1383 -12.1462 -1.2447 34 1 3.4185 -8.4850 0.0021 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739073699.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 13:59:53 Heat of formation + Delta-G solvation = -147.967580 kcal Electronic energy + Delta-G solvation = -20371.327549 eV Core-core repulsion = 16848.315184 eV Total energy + Delta-G solvation = -3523.012365 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.18574 -40.03989 -38.82424 -36.55166 -36.02716 -35.24975 -33.32497 -31.49407 -30.33003 -29.80220 -25.50563 -24.04554 -23.99957 -21.73932 -21.19569 -20.55060 -19.33875 -18.20168 -17.49245 -16.89725 -16.48267 -16.12068 -16.00135 -15.86571 -15.44653 -14.73717 -14.48718 -13.99907 -13.94089 -13.49958 -12.92709 -12.85160 -12.33806 -12.11323 -11.98891 -11.86777 -11.22418 -11.04305 -10.97929 -10.71983 -10.70395 -10.60160 -10.24358 -9.62306 -9.61051 -9.29805 -9.19891 -8.55750 -8.42316 -6.08828 -4.13019 0.60374 1.06943 1.86054 2.34289 2.77437 3.13091 3.31893 3.35581 3.39732 3.70690 4.13694 4.40547 4.66134 4.66701 4.98955 5.09112 5.18919 5.26464 5.27795 5.66357 5.90843 5.97710 6.12338 6.13004 6.13684 6.18270 6.30705 6.65170 6.66871 6.83871 6.97823 7.57370 7.64302 7.88396 7.90968 8.20220 8.28082 8.92238 9.51256 11.02692 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.035069 B = 0.003006 C = 0.002789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.236063 B = 9311.038903 C =10035.839094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.900 3.100 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.527 4.527 8 H 0.059 0.941 9 C 0.025 3.975 10 C 0.075 3.925 11 O -0.351 6.351 12 C 0.499 3.501 13 O -0.508 6.508 14 C -0.098 4.098 15 C -0.069 4.069 16 C -0.113 4.113 17 C -0.110 4.110 18 C 0.136 3.864 19 N -0.647 5.647 20 C 0.661 3.339 21 O -0.551 6.551 22 O -0.524 6.524 23 C -0.060 4.060 24 H 0.264 0.736 25 H 0.029 0.971 26 H 0.029 0.971 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.147 0.853 30 H 0.139 0.861 31 H 0.133 0.867 32 H 0.419 0.581 33 H 0.434 0.566 34 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.252 -25.826 0.635 25.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.141 4.141 3 Si 0.727 3.273 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.565 4.565 8 H 0.077 0.923 9 C -0.012 4.012 10 C 0.003 3.997 11 O -0.267 6.267 12 C 0.343 3.657 13 O -0.398 6.398 14 C -0.100 4.100 15 C -0.088 4.088 16 C -0.132 4.132 17 C -0.130 4.130 18 C 0.043 3.957 19 N -0.301 5.301 20 C 0.414 3.586 21 O -0.438 6.438 22 O -0.334 6.334 23 C -0.080 4.080 24 H 0.073 0.927 25 H 0.047 0.953 26 H 0.047 0.953 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.165 0.835 30 H 0.157 0.843 31 H 0.151 0.849 32 H 0.256 0.744 33 H 0.295 0.705 34 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 0.398 -25.244 0.550 25.253 hybrid contribution 0.992 0.534 -0.113 1.132 sum 1.389 -24.710 0.437 24.753 Atomic orbital electron populations 1.69964 1.06083 1.27083 1.49785 1.24973 0.94919 0.99359 0.94859 0.86527 0.79481 0.82463 0.78800 1.20056 1.21132 1.20070 1.20951 0.93185 0.90131 1.52227 0.92282 1.19168 0.94173 0.88938 0.98895 1.23687 0.96448 0.78460 1.01116 1.86556 1.41911 1.15548 1.82727 1.21026 0.85690 0.85488 0.73461 1.90813 1.15041 1.88278 1.45701 1.19149 0.93782 0.90666 1.06368 1.21671 0.93333 0.99232 0.94574 1.20970 1.00398 0.91169 1.00617 1.21082 0.91180 0.99780 1.00969 1.17189 0.89839 0.84360 1.04303 1.41735 1.20259 1.15213 1.52847 1.17753 0.81121 0.81532 0.78210 1.91160 1.68381 1.34782 1.49485 1.84142 1.40341 1.35053 1.73901 1.21400 1.02174 0.89237 0.95157 0.92665 0.95297 0.95295 0.92192 0.92162 0.83511 0.84339 0.84916 0.74450 0.70488 0.82717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.48 13.29 55.43 0.74 -25.75 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.53 -14.98 9.11 -34.44 -0.31 -15.29 16 8 H 0.06 1.63 7.74 -52.48 -0.41 1.22 16 9 C 0.03 0.67 5.35 -27.88 -0.15 0.52 16 10 C 0.08 1.73 5.41 37.16 0.20 1.93 16 11 O -0.35 -7.27 9.47 -40.51 -0.38 -7.65 16 12 C 0.50 9.66 7.90 34.62 0.27 9.94 16 13 O -0.51 -11.13 16.13 -19.24 -0.31 -11.44 16 14 C -0.10 -1.50 5.87 -105.00 -0.62 -2.12 16 15 C -0.07 -0.86 9.61 -39.15 -0.38 -1.23 16 16 C -0.11 -1.02 10.02 -39.67 -0.40 -1.42 16 17 C -0.11 -0.90 9.96 -39.31 -0.39 -1.29 16 18 C 0.14 1.44 6.29 -83.73 -0.53 0.92 16 19 N -0.65 -5.39 5.34 -14.30 -0.08 -5.47 16 20 C 0.66 6.68 8.97 54.05 0.48 7.17 16 21 O -0.55 -8.03 14.57 -19.28 -0.28 -8.31 16 22 O -0.52 -3.31 13.48 -40.35 -0.54 -3.86 16 23 C -0.06 -0.85 8.23 -38.97 -0.32 -1.18 16 24 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 25 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 28 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 29 H 0.15 1.79 7.61 -52.48 -0.40 1.39 16 30 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 31 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 32 H 0.42 1.97 8.93 -40.82 -0.36 1.61 16 33 H 0.43 0.99 9.11 45.56 0.42 1.41 16 34 H 0.16 2.56 5.82 -52.49 -0.31 2.26 16 LS Contribution 311.52 15.07 4.69 4.69 Total: -1.00 -35.81 311.52 -6.15 -41.95 By element: Atomic # 1 Polarization: 2.40 SS G_CDS: -2.73 Total: -0.33 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: -2.23 Total: -0.42 kcal Atomic # 7 Polarization: -31.87 SS G_CDS: 0.66 Total: -31.21 kcal Atomic # 8 Polarization: -29.74 SS G_CDS: -1.52 Total: -31.26 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -35.81 -6.15 -41.95 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739073699.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.013 kcal (2) G-P(sol) polarization free energy of solvation -35.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds