Wall clock time and date at job start Fri Apr 10 2020 13:59:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 120.00003 * 2 1 4 4 H 1.48493 * 109.47211 * 240.00009 * 3 2 1 5 5 H 1.48504 * 109.47140 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.46975 * 119.99675 * 3 2 1 7 7 C 1.37869 * 119.99988 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99874 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00223 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47152 * 179.97438 * 9 7 2 11 11 O 1.45201 * 109.46840 * 179.97438 * 10 9 7 12 12 C 1.34706 * 116.99626 * 180.02562 * 11 10 9 13 13 O 1.21471 * 120.00296 * 0.02562 * 12 11 10 14 14 C 1.47749 * 119.99702 * 180.02562 * 12 11 10 15 15 C 1.39660 * 120.11702 * 359.97438 * 14 12 11 16 16 C 1.37965 * 119.99151 * 180.02562 * 15 14 12 17 17 C 1.38265 * 120.22228 * 0.02562 * 16 15 14 18 18 C 1.38950 * 120.24028 * 359.97438 * 17 16 15 19 19 N 1.39978 * 119.99955 * 180.02562 * 18 17 16 20 20 C 1.34776 * 120.00145 * 144.88597 * 19 18 17 21 21 O 1.21514 * 119.99513 * 4.62436 * 20 19 18 22 22 O 1.34649 * 120.00266 * 184.62544 * 20 19 18 23 23 C 1.38620 * 120.00219 * 0.02562 * 18 17 16 24 24 H 0.97008 * 120.00103 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.46823 * 60.00505 * 9 7 2 26 26 H 1.08998 * 109.47160 * 300.00403 * 9 7 2 27 27 H 1.08996 * 109.46915 * 60.00290 * 10 9 7 28 28 H 1.08993 * 109.47079 * 300.00105 * 10 9 7 29 29 H 1.08003 * 120.00758 * 0.02865 * 15 14 12 30 30 H 1.07990 * 119.88796 * 179.97438 * 16 15 14 31 31 H 1.08002 * 119.88118 * 179.97438 * 17 16 15 32 32 H 0.97003 * 119.99960 * 324.89311 * 19 18 17 33 33 H 0.96703 * 116.99778 * 180.02562 * 22 20 19 34 34 H 1.08001 * 120.10661 * 179.72521 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0018 11 8 1.5193 -4.9195 -0.0012 12 6 2.2530 -6.0492 -0.0017 13 8 3.4660 -5.9856 -0.0021 14 6 1.5822 -7.3657 -0.0017 15 6 0.1877 -7.4416 -0.0006 16 6 -0.4360 -8.6722 -0.0001 17 6 0.3151 -9.8331 0.0000 18 6 1.7031 -9.7686 -0.0011 19 7 2.4586 -10.9470 -0.0015 20 6 3.6256 -10.9991 -0.6737 21 8 4.0634 -9.9999 -1.2090 22 8 4.3062 -12.1582 -0.7522 23 6 2.3397 -8.5372 -0.0016 24 1 -0.4851 0.8401 -0.0004 25 1 0.6241 -2.5567 -0.8904 26 1 0.6247 -2.5571 0.8896 27 1 2.8726 -3.6047 0.8877 28 1 2.8713 -3.6039 -0.8922 29 1 -0.4025 -6.5371 -0.0003 30 1 -1.5144 -8.7290 0.0011 31 1 -0.1788 -10.7936 0.0008 32 1 2.1421 -11.7262 0.4819 33 1 5.1383 -12.1462 -1.2447 34 1 3.4185 -8.4850 0.0021 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739073699.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 13:59:52 Heat of formation + Delta-G solvation = -174.563257 kcal Electronic energy + Delta-G solvation = -20372.480825 eV Core-core repulsion = 16848.315184 eV Total energy + Delta-G solvation = -3524.165640 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.05365 -41.42534 -39.82630 -37.72980 -37.24249 -36.13062 -35.45566 -32.70663 -32.04285 -30.81239 -27.34920 -25.46866 -24.83003 -23.03481 -22.57862 -21.98036 -20.16368 -19.35888 -18.57437 -18.30180 -17.92755 -17.58109 -17.26900 -16.97224 -16.71351 -16.36581 -15.67781 -15.21759 -14.78846 -14.70327 -14.53846 -14.36970 -13.94742 -13.18130 -13.14044 -12.93149 -12.81821 -12.71438 -12.60200 -12.58769 -11.95990 -11.87929 -11.57965 -11.53853 -11.50479 -11.38474 -10.61624 -10.12473 -9.40836 -8.27777 -6.41094 -0.41939 0.17003 1.17850 1.37393 1.40172 1.44286 1.51378 1.61444 1.70959 2.39585 2.70732 3.06441 3.47152 3.59076 3.86365 4.06827 4.12077 4.17936 4.21924 4.32786 4.40658 4.64666 4.79581 5.03246 5.18843 5.20374 5.28921 5.33008 5.45000 5.47228 5.66658 5.71848 5.83446 6.05442 6.21566 6.62737 6.71811 7.26220 7.28404 8.84696 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.035069 B = 0.003006 C = 0.002789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.236063 B = 9311.038903 C =10035.839094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.008 3.992 3 Si 0.973 3.027 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.266 1.266 7 C -0.554 4.554 8 H 0.063 0.937 9 C 0.034 3.966 10 C 0.089 3.911 11 O -0.353 6.353 12 C 0.496 3.504 13 O -0.545 6.545 14 C -0.128 4.128 15 C -0.075 4.075 16 C -0.098 4.098 17 C -0.079 4.079 18 C 0.136 3.864 19 N -0.631 5.631 20 C 0.662 3.338 21 O -0.603 6.603 22 O -0.507 6.507 23 C -0.079 4.079 24 H 0.269 0.731 25 H 0.009 0.991 26 H 0.010 0.990 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.142 0.858 30 H 0.181 0.819 31 H 0.185 0.815 32 H 0.439 0.561 33 H 0.451 0.549 34 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.969 -27.982 0.845 28.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.191 4.191 3 Si 0.797 3.203 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.191 1.191 7 C -0.592 4.592 8 H 0.081 0.919 9 C -0.003 4.003 10 C 0.016 3.984 11 O -0.270 6.270 12 C 0.343 3.657 13 O -0.437 6.437 14 C -0.129 4.129 15 C -0.094 4.094 16 C -0.116 4.116 17 C -0.099 4.099 18 C 0.043 3.957 19 N -0.287 5.287 20 C 0.415 3.585 21 O -0.493 6.493 22 O -0.319 6.319 23 C -0.100 4.100 24 H 0.078 0.922 25 H 0.027 0.973 26 H 0.029 0.971 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.160 0.840 30 H 0.198 0.802 31 H 0.202 0.798 32 H 0.280 0.720 33 H 0.315 0.685 34 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -0.823 -27.473 0.775 27.496 hybrid contribution 1.320 0.999 -0.178 1.665 sum 0.497 -26.474 0.597 26.485 Atomic orbital electron populations 1.70080 1.07732 1.28409 1.50174 1.25941 0.95874 1.03312 0.93969 0.85379 0.78224 0.77461 0.79263 1.19180 1.20214 1.19104 1.21340 0.93669 0.91307 1.52854 0.91896 1.18965 0.94200 0.90188 0.96942 1.23240 0.95332 0.78895 1.00931 1.86542 1.41800 1.15421 1.83198 1.21882 0.85549 0.86230 0.72015 1.90777 1.16569 1.88652 1.47705 1.18971 0.95147 0.88361 1.10471 1.21772 0.91765 1.01035 0.94822 1.21433 1.02398 0.89625 0.98125 1.21621 0.89638 1.01769 0.96826 1.17299 0.91123 0.83662 1.03659 1.41602 1.19528 1.15142 1.52411 1.17940 0.81381 0.81534 0.77636 1.91153 1.69690 1.36816 1.51676 1.84133 1.41132 1.32801 1.73852 1.21230 1.00816 0.90777 0.97183 0.92226 0.97265 0.97114 0.92225 0.92452 0.83983 0.80192 0.79769 0.71981 0.68515 0.85907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.80 13.29 21.44 0.28 -55.52 16 2 C 0.01 0.48 5.46 84.65 0.46 0.94 16 3 Si 0.97 44.32 29.54 68.60 2.03 46.34 16 4 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 5 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 6 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 7 C -0.55 -32.24 9.11 25.60 0.23 -32.01 16 8 H 0.06 3.52 7.74 -2.91 -0.02 3.50 16 9 C 0.03 1.89 5.35 29.85 0.16 2.05 16 10 C 0.09 4.30 5.41 71.98 0.39 4.69 16 11 O -0.35 -15.44 9.47 -56.16 -0.53 -15.97 16 12 C 0.50 20.43 7.90 70.34 0.56 20.99 16 13 O -0.54 -25.59 16.13 19.93 0.32 -25.27 16 14 C -0.13 -4.06 5.87 -20.11 -0.12 -4.17 16 15 C -0.08 -1.78 9.61 22.55 0.22 -1.56 16 16 C -0.10 -1.36 10.02 22.21 0.22 -1.14 16 17 C -0.08 -0.92 9.96 22.45 0.22 -0.69 16 18 C 0.14 2.60 6.29 38.10 0.24 2.84 16 19 N -0.63 -8.94 5.34 -429.55 -2.30 -11.24 16 20 C 0.66 12.68 8.97 129.79 1.16 13.84 16 21 O -0.60 -18.08 14.57 19.80 0.29 -17.79 16 22 O -0.51 -5.42 13.48 -55.59 -0.75 -6.17 16 23 C -0.08 -2.34 8.23 22.67 0.19 -2.15 16 24 H 0.27 15.10 8.31 -92.70 -0.77 14.33 16 25 H 0.01 0.52 8.14 -2.38 -0.02 0.50 16 26 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.06 2.84 8.14 -2.39 -0.02 2.82 16 28 H 0.06 2.76 8.14 -2.39 -0.02 2.74 16 29 H 0.14 3.45 7.61 -2.91 -0.02 3.42 16 30 H 0.18 1.12 8.06 -2.92 -0.02 1.09 16 31 H 0.19 0.37 8.06 -2.91 -0.02 0.35 16 32 H 0.44 2.43 8.93 -92.71 -0.83 1.61 16 33 H 0.45 1.37 9.11 -74.06 -0.67 0.69 16 34 H 0.12 4.41 5.82 -2.91 -0.02 4.40 16 Total: -1.00 -82.34 311.52 2.94 -79.40 By element: Atomic # 1 Polarization: 2.94 SS G_CDS: -0.34 Total: 2.60 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: 3.94 Total: 3.61 kcal Atomic # 7 Polarization: -64.74 SS G_CDS: -2.01 Total: -66.75 kcal Atomic # 8 Polarization: -64.53 SS G_CDS: -0.67 Total: -65.20 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.34 kcal Total: -82.34 2.94 -79.40 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739073699.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.163 kcal (2) G-P(sol) polarization free energy of solvation -82.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds