Wall clock time and date at job start Fri Apr 10 2020 14:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86806 * 119.99687 * 2 1 4 4 H 1.48500 * 109.47242 * 270.00037 * 3 2 1 5 5 H 1.48503 * 109.46956 * 30.00230 * 3 2 1 6 6 H 1.48504 * 109.47097 * 149.99695 * 3 2 1 7 7 C 1.38653 * 120.00290 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99844 * 179.97438 * 7 2 1 9 9 O 1.34825 * 120.00104 * 0.02562 * 7 2 1 10 10 C 1.35747 * 117.00280 * 174.97346 * 9 7 2 11 11 C 1.38953 * 120.03523 * 185.37322 * 10 9 7 12 12 C 1.38125 * 120.06949 * 179.97438 * 11 10 9 13 13 C 1.38194 * 120.14239 * 0.02562 * 12 11 10 14 14 C 1.38928 * 120.06608 * 359.97438 * 13 12 11 15 15 N 1.39920 * 120.03744 * 180.02562 * 14 13 12 16 16 C 1.34780 * 120.00181 * 35.12118 * 15 14 13 17 17 O 1.21296 * 119.99733 * 355.50654 * 16 15 14 18 18 C 1.50691 * 120.00365 * 175.77675 * 16 15 14 19 19 O 1.42901 * 112.99911 * 25.06185 * 18 16 15 20 20 C 1.54036 * 113.81965 * 253.23481 * 18 16 15 21 21 O 1.44449 * 85.42733 * 223.23732 * 20 18 16 22 22 C 1.44177 * 93.37859 * 24.08408 * 21 20 18 23 23 C 1.38734 * 120.03225 * 5.65014 * 10 9 7 24 24 H 0.96999 * 120.00370 * 359.97438 * 1 2 3 25 25 H 1.08000 * 119.96115 * 359.97438 * 11 10 9 26 26 H 1.07998 * 119.92598 * 180.02562 * 12 11 10 27 27 H 1.07999 * 119.97134 * 179.97438 * 13 12 11 28 28 H 0.96997 * 120.00180 * 215.12343 * 15 14 13 29 29 H 0.96706 * 113.99910 * 309.66739 * 19 18 16 30 30 H 1.09001 * 113.85966 * 337.34445 * 20 18 16 31 31 H 1.08997 * 113.86586 * 109.04820 * 20 18 16 32 32 H 1.08999 * 113.86824 * 221.76801 * 22 21 20 33 33 H 1.09003 * 113.86159 * 90.06128 * 22 21 20 34 34 H 1.08005 * 120.07301 * 0.02562 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4970 2.0466 -1.4001 5 1 1.4469 2.6527 0.7001 6 1 3.5471 1.4404 0.7001 7 6 2.0089 -1.2007 0.0005 8 1 3.0889 -1.2006 0.0001 9 8 1.3348 -2.3684 0.0005 10 6 2.0702 -3.5046 -0.1049 11 6 1.4358 -4.7351 -0.2237 12 6 2.1834 -5.8916 -0.3316 13 6 3.5639 -5.8290 -0.3212 14 6 4.2041 -4.6017 -0.2026 15 7 5.6019 -4.5390 -0.1927 16 6 6.3203 -5.3947 -0.9466 17 8 5.7597 -6.2712 -1.5700 18 6 7.8203 -5.2663 -1.0101 19 8 8.3756 -4.6303 0.1429 20 6 8.3402 -4.6987 -2.3444 21 8 9.3494 -5.7284 -2.2563 22 6 8.5399 -6.5685 -1.4091 23 6 3.4559 -3.4388 -0.0883 24 1 -0.4851 0.8400 0.0004 25 1 0.3571 -4.7873 -0.2318 26 1 1.6879 -6.8467 -0.4243 27 1 4.1457 -6.7350 -0.4053 28 1 6.0539 -3.8798 0.3568 29 1 7.9469 -3.7955 0.3763 30 1 7.6494 -4.8283 -3.1776 31 1 8.7345 -3.6854 -2.2689 32 1 9.0922 -7.0349 -0.5933 33 1 7.9103 -7.2703 -1.9561 34 1 3.9513 -2.4840 0.0089 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001141761913.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:00:41 Heat of formation + Delta-G solvation = -78.354430 kcal Electronic energy + Delta-G solvation = -21247.093002 eV Core-core repulsion = 17727.099290 eV Total energy + Delta-G solvation = -3519.993712 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.56592 -39.72796 -38.55177 -36.56279 -36.42934 -34.30442 -32.32103 -29.95746 -29.26818 -28.47072 -27.04234 -25.42998 -23.64989 -21.95409 -21.21140 -20.22781 -19.14344 -18.08412 -17.43359 -17.05344 -16.58893 -15.79726 -15.75383 -15.22835 -15.13522 -14.86520 -14.23985 -14.08370 -13.92727 -13.66442 -13.17537 -13.10108 -12.63573 -12.42692 -12.00240 -11.81700 -11.59683 -11.30122 -11.13552 -10.94163 -10.84288 -10.53221 -10.35479 -9.93785 -9.64508 -9.39706 -8.89186 -7.89451 -7.28342 -6.52579 -4.13003 1.71434 2.23833 2.44876 2.85140 3.00106 3.05615 3.07085 3.11407 3.61230 3.77371 3.88501 4.34440 4.50673 4.69327 4.97582 5.00157 5.12908 5.19958 5.32313 5.49470 5.59697 5.68156 5.87265 5.89866 6.08742 6.14373 6.49879 6.70180 6.84193 6.90488 7.01312 7.20006 7.31709 7.46549 7.66583 7.90234 7.97576 8.92377 9.61545 10.65229 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.019731 B = 0.004525 C = 0.003822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.754759 B = 6186.544025 C = 7323.894785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.041 3.959 3 Si 0.941 3.059 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.268 1.268 7 C -0.395 4.395 8 H 0.090 0.910 9 O -0.174 6.174 10 C 0.167 3.833 11 C -0.195 4.195 12 C -0.064 4.064 13 C -0.204 4.204 14 C 0.171 3.829 15 N -0.661 5.661 16 C 0.491 3.509 17 O -0.505 6.505 18 C 0.043 3.957 19 O -0.521 6.521 20 C 0.031 3.969 21 O -0.368 6.368 22 C 0.072 3.928 23 C -0.254 4.254 24 H 0.271 0.729 25 H 0.120 0.880 26 H 0.117 0.883 27 H 0.123 0.877 28 H 0.403 0.597 29 H 0.384 0.616 30 H 0.099 0.901 31 H 0.107 0.893 32 H 0.106 0.894 33 H 0.113 0.887 34 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.816 -7.053 -0.642 15.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.164 4.164 3 Si 0.766 3.234 4 H -0.199 1.199 5 H -0.202 1.202 6 H -0.193 1.193 7 C -0.471 4.471 8 H 0.108 0.892 9 O -0.078 6.078 10 C 0.113 3.887 11 C -0.215 4.215 12 C -0.083 4.083 13 C -0.225 4.225 14 C 0.079 3.921 15 N -0.307 5.307 16 C 0.277 3.723 17 O -0.380 6.380 18 C -0.003 4.003 19 O -0.327 6.327 20 C -0.047 4.047 21 O -0.286 6.286 22 C -0.005 4.005 23 C -0.276 4.276 24 H 0.081 0.919 25 H 0.138 0.862 26 H 0.135 0.865 27 H 0.141 0.859 28 H 0.239 0.761 29 H 0.233 0.767 30 H 0.117 0.883 31 H 0.125 0.875 32 H 0.125 0.875 33 H 0.131 0.869 34 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 13.674 -7.996 -1.196 15.885 hybrid contribution 0.140 1.853 0.437 1.909 sum 13.813 -6.143 -0.760 15.136 Atomic orbital electron populations 1.70030 1.05960 1.27780 1.45700 1.25286 0.95841 0.98817 0.96456 0.85722 0.78867 0.80135 0.78726 1.19860 1.20175 1.19276 1.21265 0.91646 0.80832 1.53350 0.89242 1.84009 1.33976 1.11341 1.78434 1.19062 0.89363 0.88237 0.92062 1.20305 0.99866 0.90274 1.11050 1.20567 0.93063 0.97008 0.97681 1.20659 0.94413 0.96075 1.11316 1.17422 0.80413 0.93986 1.00307 1.43455 1.05966 1.36298 1.44950 1.21182 0.89590 0.82137 0.79440 1.90745 1.71341 1.32462 1.43437 1.24757 0.88990 0.97835 0.88677 1.86635 1.60936 1.40671 1.44454 1.24655 0.90116 0.94755 0.95137 1.89779 1.34568 1.32575 1.71720 1.24128 0.91469 0.91596 0.93342 1.20806 0.94042 0.97048 1.15701 0.91912 0.86240 0.86461 0.85897 0.76100 0.76667 0.88297 0.87522 0.87542 0.86925 0.85194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.55 13.67 55.48 0.76 -23.79 16 2 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 3 Si 0.94 19.65 29.55 -169.99 -5.02 14.63 16 4 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 5 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 6 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 7 C -0.39 -10.58 9.49 30.89 0.29 -10.28 16 8 H 0.09 2.18 5.20 -52.48 -0.27 1.91 16 9 O -0.17 -4.81 9.76 0.07 0.00 -4.81 16 10 C 0.17 3.90 6.64 -39.13 -0.26 3.64 16 11 C -0.20 -4.04 9.99 -39.36 -0.39 -4.44 16 12 C -0.06 -1.17 10.03 -39.64 -0.40 -1.56 16 13 C -0.20 -3.74 8.69 -39.34 -0.34 -4.09 16 14 C 0.17 3.08 6.29 -83.72 -0.53 2.55 16 15 N -0.66 -9.01 5.30 -9.88 -0.05 -9.06 16 16 C 0.49 6.62 7.02 -10.99 -0.08 6.54 16 17 O -0.51 -8.38 13.48 5.54 0.07 -8.30 16 18 C 0.04 0.45 1.90 -90.69 -0.17 0.28 16 19 O -0.52 -4.87 13.40 -45.86 -0.61 -5.48 16 20 C 0.03 0.31 8.63 37.64 0.32 0.63 16 21 O -0.37 -4.38 12.46 -45.86 -0.57 -4.95 16 22 C 0.07 0.75 8.52 37.64 0.32 1.07 16 23 C -0.25 -5.21 9.08 -39.21 -0.36 -5.56 16 24 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 25 H 0.12 2.36 8.06 -52.49 -0.42 1.94 16 26 H 0.12 1.76 8.06 -52.49 -0.42 1.34 16 27 H 0.12 2.21 6.23 -52.49 -0.33 1.88 16 28 H 0.40 4.05 7.13 -40.82 -0.29 3.76 16 29 H 0.38 2.12 7.47 45.56 0.34 2.46 16 30 H 0.10 0.97 8.09 -51.93 -0.42 0.55 16 31 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.11 1.15 7.37 -51.93 -0.38 0.77 16 34 H 0.13 2.57 5.64 -52.48 -0.30 2.27 16 LS Contribution 298.57 15.07 4.50 4.50 Total: -1.00 -33.19 298.57 -5.09 -38.28 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -2.47 Total: 9.21 kcal Atomic # 6 Polarization: -8.54 SS G_CDS: -1.68 Total: -10.23 kcal Atomic # 7 Polarization: -33.56 SS G_CDS: 0.71 Total: -32.85 kcal Atomic # 8 Polarization: -22.43 SS G_CDS: -1.11 Total: -23.54 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.02 Total: 14.63 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -33.19 -5.09 -38.28 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141761913.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.074 kcal (2) G-P(sol) polarization free energy of solvation -33.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds