Wall clock time and date at job start Fri Apr 10 2020 14:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86806 * 119.99687 * 2 1 4 4 H 1.48500 * 109.47242 * 270.00037 * 3 2 1 5 5 H 1.48503 * 109.46956 * 30.00230 * 3 2 1 6 6 H 1.48504 * 109.47097 * 149.99695 * 3 2 1 7 7 C 1.38653 * 120.00290 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99844 * 179.97438 * 7 2 1 9 9 O 1.34825 * 120.00104 * 0.02562 * 7 2 1 10 10 C 1.35747 * 117.00280 * 174.97346 * 9 7 2 11 11 C 1.38953 * 120.03523 * 185.37322 * 10 9 7 12 12 C 1.38125 * 120.06949 * 179.97438 * 11 10 9 13 13 C 1.38194 * 120.14239 * 0.02562 * 12 11 10 14 14 C 1.38928 * 120.06608 * 359.97438 * 13 12 11 15 15 N 1.39920 * 120.03744 * 180.02562 * 14 13 12 16 16 C 1.34780 * 120.00181 * 35.12118 * 15 14 13 17 17 O 1.21296 * 119.99733 * 355.50654 * 16 15 14 18 18 C 1.50691 * 120.00365 * 175.77675 * 16 15 14 19 19 O 1.42901 * 112.99911 * 25.06185 * 18 16 15 20 20 C 1.54036 * 113.81965 * 253.23481 * 18 16 15 21 21 O 1.44449 * 85.42733 * 223.23732 * 20 18 16 22 22 C 1.44177 * 93.37859 * 24.08408 * 21 20 18 23 23 C 1.38734 * 120.03225 * 5.65014 * 10 9 7 24 24 H 0.96999 * 120.00370 * 359.97438 * 1 2 3 25 25 H 1.08000 * 119.96115 * 359.97438 * 11 10 9 26 26 H 1.07998 * 119.92598 * 180.02562 * 12 11 10 27 27 H 1.07999 * 119.97134 * 179.97438 * 13 12 11 28 28 H 0.96997 * 120.00180 * 215.12343 * 15 14 13 29 29 H 0.96706 * 113.99910 * 309.66739 * 19 18 16 30 30 H 1.09001 * 113.85966 * 337.34445 * 20 18 16 31 31 H 1.08997 * 113.86586 * 109.04820 * 20 18 16 32 32 H 1.08999 * 113.86824 * 221.76801 * 22 21 20 33 33 H 1.09003 * 113.86159 * 90.06128 * 22 21 20 34 34 H 1.08005 * 120.07301 * 0.02562 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4970 2.0466 -1.4001 5 1 1.4469 2.6527 0.7001 6 1 3.5471 1.4404 0.7001 7 6 2.0089 -1.2007 0.0005 8 1 3.0889 -1.2006 0.0001 9 8 1.3348 -2.3684 0.0005 10 6 2.0702 -3.5046 -0.1049 11 6 1.4358 -4.7351 -0.2237 12 6 2.1834 -5.8916 -0.3316 13 6 3.5639 -5.8290 -0.3212 14 6 4.2041 -4.6017 -0.2026 15 7 5.6019 -4.5390 -0.1927 16 6 6.3203 -5.3947 -0.9466 17 8 5.7597 -6.2712 -1.5700 18 6 7.8203 -5.2663 -1.0101 19 8 8.3756 -4.6303 0.1429 20 6 8.3402 -4.6987 -2.3444 21 8 9.3494 -5.7284 -2.2563 22 6 8.5399 -6.5685 -1.4091 23 6 3.4559 -3.4388 -0.0883 24 1 -0.4851 0.8400 0.0004 25 1 0.3571 -4.7873 -0.2318 26 1 1.6879 -6.8467 -0.4243 27 1 4.1457 -6.7350 -0.4053 28 1 6.0539 -3.8798 0.3568 29 1 7.9469 -3.7955 0.3763 30 1 7.6494 -4.8283 -3.1776 31 1 8.7345 -3.6854 -2.2689 32 1 9.0922 -7.0349 -0.5933 33 1 7.9103 -7.2703 -1.9561 34 1 3.9513 -2.4840 0.0089 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001141761913.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:00:41 Heat of formation + Delta-G solvation = -104.999286 kcal Electronic energy + Delta-G solvation = -21248.248410 eV Core-core repulsion = 17727.099290 eV Total energy + Delta-G solvation = -3521.149120 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.52936 -41.07519 -40.01631 -38.10070 -37.30115 -35.61605 -34.23229 -31.22996 -30.67395 -29.81454 -27.81767 -27.33220 -24.84668 -23.55455 -22.50163 -21.25636 -20.35752 -19.69457 -18.99792 -17.91988 -17.63682 -17.08276 -16.76809 -16.65091 -16.48402 -16.14801 -15.81548 -15.56252 -15.44736 -14.84390 -14.60710 -14.24372 -13.98985 -13.59056 -13.33395 -13.28832 -12.93137 -12.71888 -12.62779 -12.46330 -12.11545 -11.79867 -11.46011 -11.32497 -11.18349 -10.76601 -10.52322 -9.41739 -8.94735 -8.46398 -6.15635 0.29377 0.65985 1.21873 1.37147 1.46703 1.54348 1.72889 2.17961 2.22859 2.79229 2.83388 2.92310 3.14265 3.40269 3.49440 3.93352 4.08740 4.21528 4.29869 4.40162 4.42222 4.57279 4.60873 4.62764 4.74220 4.88909 4.99715 5.10394 5.31685 5.37167 5.62224 5.64811 6.00731 6.05481 6.14962 6.43181 6.83264 6.97883 7.76781 8.76503 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.019731 B = 0.004525 C = 0.003822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.754759 B = 6186.544025 C = 7323.894785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.022 4.022 3 Si 1.018 2.982 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.247 1.247 7 C -0.414 4.414 8 H 0.106 0.894 9 O -0.226 6.226 10 C 0.133 3.867 11 C -0.211 4.211 12 C -0.053 4.053 13 C -0.199 4.199 14 C 0.179 3.821 15 N -0.653 5.653 16 C 0.495 3.505 17 O -0.535 6.535 18 C 0.056 3.944 19 O -0.523 6.523 20 C 0.032 3.968 21 O -0.386 6.386 22 C 0.068 3.932 23 C -0.255 4.255 24 H 0.272 0.728 25 H 0.119 0.881 26 H 0.154 0.846 27 H 0.135 0.865 28 H 0.422 0.578 29 H 0.401 0.599 30 H 0.098 0.902 31 H 0.130 0.870 32 H 0.120 0.880 33 H 0.112 0.888 34 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.641 -7.441 -0.566 18.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.219 4.219 3 Si 0.837 3.163 4 H -0.191 1.191 5 H -0.200 1.200 6 H -0.170 1.170 7 C -0.490 4.490 8 H 0.124 0.876 9 O -0.132 6.132 10 C 0.082 3.918 11 C -0.230 4.230 12 C -0.072 4.072 13 C -0.220 4.220 14 C 0.085 3.915 15 N -0.300 5.300 16 C 0.282 3.718 17 O -0.412 6.412 18 C 0.011 3.989 19 O -0.332 6.332 20 C -0.045 4.045 21 O -0.305 6.305 22 C -0.008 4.008 23 C -0.276 4.276 24 H 0.082 0.918 25 H 0.137 0.863 26 H 0.171 0.829 27 H 0.153 0.847 28 H 0.261 0.739 29 H 0.253 0.747 30 H 0.116 0.884 31 H 0.148 0.852 32 H 0.138 0.862 33 H 0.130 0.870 34 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 16.557 -8.411 -1.103 18.604 hybrid contribution -0.620 1.677 0.395 1.831 sum 15.937 -6.734 -0.707 17.316 Atomic orbital electron populations 1.70184 1.08135 1.28850 1.48614 1.26595 0.96794 1.02786 0.95773 0.84595 0.78048 0.74508 0.79136 1.19074 1.19974 1.17004 1.21835 0.92622 0.81228 1.53320 0.87637 1.83983 1.35673 1.12504 1.81078 1.19595 0.90815 0.88026 0.93401 1.20524 1.00309 0.90453 1.11738 1.20945 0.93108 0.97530 0.95606 1.20990 0.94695 0.96605 1.09671 1.17436 0.82494 0.93005 0.98539 1.43406 1.04185 1.37032 1.45343 1.21772 0.90752 0.81065 0.78232 1.90729 1.72230 1.33691 1.44519 1.24617 0.86291 0.98460 0.89541 1.86634 1.60904 1.41785 1.43830 1.24820 0.89694 0.95557 0.94478 1.89771 1.35347 1.33321 1.72016 1.24255 0.91448 0.91557 0.93588 1.20850 0.93166 0.98152 1.15455 0.91849 0.86331 0.82865 0.84738 0.73917 0.74675 0.88410 0.85232 0.86197 0.87023 0.84834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.83 13.67 21.61 0.30 -54.54 16 2 C -0.02 -1.18 5.49 84.83 0.47 -0.71 16 3 Si 1.02 40.42 29.55 68.60 2.03 42.45 16 4 H -0.27 -10.11 7.11 99.48 0.71 -9.41 16 5 H -0.27 -10.67 7.11 99.48 0.71 -9.97 16 6 H -0.25 -8.79 7.11 99.48 0.71 -8.09 16 7 C -0.41 -22.81 9.49 67.92 0.64 -22.17 16 8 H 0.11 5.17 5.20 -2.91 -0.02 5.15 16 9 O -0.23 -13.05 9.76 -22.66 -0.22 -13.27 16 10 C 0.13 6.34 6.64 22.56 0.15 6.49 16 11 C -0.21 -8.77 9.99 22.41 0.22 -8.55 16 12 C -0.05 -1.84 10.03 22.23 0.22 -1.61 16 13 C -0.20 -6.84 8.69 22.42 0.19 -6.64 16 14 C 0.18 6.10 6.29 38.14 0.24 6.34 16 15 N -0.65 -15.96 5.30 -303.55 -1.61 -17.57 16 16 C 0.49 11.97 7.02 87.65 0.62 12.58 16 17 O -0.54 -16.49 13.48 -3.08 -0.04 -16.53 16 18 C 0.06 1.03 1.90 -10.84 -0.02 1.01 16 19 O -0.52 -7.88 13.40 -138.82 -1.86 -9.74 16 20 C 0.03 0.54 8.63 72.30 0.62 1.16 16 21 O -0.39 -8.22 12.46 -138.82 -1.73 -9.95 16 22 C 0.07 1.26 8.52 72.30 0.62 1.88 16 23 C -0.25 -10.29 9.08 22.51 0.20 -10.08 16 24 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 25 H 0.12 4.84 8.06 -2.91 -0.02 4.82 16 26 H 0.15 4.12 8.06 -2.91 -0.02 4.10 16 27 H 0.13 4.42 6.23 -2.91 -0.02 4.40 16 28 H 0.42 7.11 7.13 -92.71 -0.66 6.45 16 29 H 0.40 2.87 7.47 -74.05 -0.55 2.31 16 30 H 0.10 1.69 8.09 -2.39 -0.02 1.67 16 31 H 0.13 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.11 2.07 7.37 -2.39 -0.02 2.06 16 34 H 0.13 5.19 5.64 -2.91 -0.02 5.17 16 Total: -1.00 -74.26 298.57 1.01 -73.26 By element: Atomic # 1 Polarization: 26.23 SS G_CDS: -0.04 Total: 26.19 kcal Atomic # 6 Polarization: -24.49 SS G_CDS: 4.18 Total: -20.31 kcal Atomic # 7 Polarization: -70.79 SS G_CDS: -1.31 Total: -72.10 kcal Atomic # 8 Polarization: -45.64 SS G_CDS: -3.85 Total: -49.49 kcal Atomic # 14 Polarization: 40.42 SS G_CDS: 2.03 Total: 42.45 kcal Total: -74.26 1.01 -73.26 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141761913.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.742 kcal (2) G-P(sol) polarization free energy of solvation -74.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds